{"id":"https://openalex.org/W2054187015","doi":"https://doi.org/10.1186/1471-2105-10-393","title":"Phylogeny-guided interaction mapping in seven eukaryotes","display_name":"Phylogeny-guided interaction mapping in seven eukaryotes","publication_year":2009,"publication_date":"2009-11-30","ids":{"openalex":"https://openalex.org/W2054187015","doi":"https://doi.org/10.1186/1471-2105-10-393","mag":"2054187015","pmid":"https://pubmed.ncbi.nlm.nih.gov/19948065"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-393","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-393","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-393","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-393","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001574159","display_name":"Janusz Dutkowski","orcid":null},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Janusz Dutkowski","raw_affiliation_strings":["Institute of Informatics, University of Warsaw, Warsaw, Poland. januszd@mimuw.edu.pl","Institute of Informatics, University of Warsaw, Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Informatics, University of Warsaw, Warsaw, Poland. januszd@mimuw.edu.pl","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"Institute of Informatics, University of Warsaw, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023573472","display_name":"Jerzy Tiuryn","orcid":"https://orcid.org/0000-0002-0285-5606"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Jerzy Tiuryn","raw_affiliation_strings":["Institute of Informatics, University of Warsaw, Banacha 2, 02-097, Warsaw, Poland","Institute of Informatics, University of Warsaw, Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Informatics, University of Warsaw, Banacha 2, 02-097, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"Institute of Informatics, University of Warsaw, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5001574159"],"corresponding_institution_ids":["https://openalex.org/I4654613"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.9407,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.73959794,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"10","issue":"1","first_page":"393","last_page":"393"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.7027113437652588},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6929588317871094},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.6144904494285583},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.6073213815689087},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5564005374908447},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4406377971172333},{"id":"https://openalex.org/keywords/drosophila-melanogaster","display_name":"Drosophila melanogaster","score":0.4375852644443512},{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.42783790826797485},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4124751687049866},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3419049382209778},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17875167727470398}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.7027113437652588},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6929588317871094},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.6144904494285583},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.6073213815689087},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5564005374908447},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4406377971172333},{"id":"https://openalex.org/C2780104201","wikidata":"https://www.wikidata.org/wiki/Q130888","display_name":"Drosophila melanogaster","level":3,"score":0.4375852644443512},{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.42783790826797485},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4124751687049866},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3419049382209778},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17875167727470398}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-10-393","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-393","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-393","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19948065","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19948065","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:bc1be99477824974a768dca1acfa7bf4","is_oa":true,"landing_page_url":"https://doaj.org/article/bc1be99477824974a768dca1acfa7bf4","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 10, Iss 1, p 393 (2009)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2793266","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2793266","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-393","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-393","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-393","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5400000214576721,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2054187015.pdf","grobid_xml":"https://content.openalex.org/works/W2054187015.grobid-xml"},"referenced_works_count":80,"referenced_works":["https://openalex.org/W1515104257","https://openalex.org/W1647729745","https://openalex.org/W1674996899","https://openalex.org/W1879637501","https://openalex.org/W1918391659","https://openalex.org/W1967638691","https://openalex.org/W1981747825","https://openalex.org/W1984143112","https://openalex.org/W1984249061","https://openalex.org/W1984567848","https://openalex.org/W1988496202","https://openalex.org/W1993591356","https://openalex.org/W1994803330","https://openalex.org/W1999823311","https://openalex.org/W2027439534","https://openalex.org/W2029574260","https://openalex.org/W2037442572","https://openalex.org/W2039648378","https://openalex.org/W2040411864","https://openalex.org/W2045131140","https://openalex.org/W2050721857","https://openalex.org/W2057885377","https://openalex.org/W2062574977","https://openalex.org/W2065304353","https://openalex.org/W2067305633","https://openalex.org/W2071462992","https://openalex.org/W2075578689","https://openalex.org/W2080182143","https://openalex.org/W2080828514","https://openalex.org/W2095910716","https://openalex.org/W2096861578","https://openalex.org/W2097928187","https://openalex.org/W2101181377","https://openalex.org/W2101895706","https://openalex.org/W2103017472","https://openalex.org/W2104315543","https://openalex.org/W2107067224","https://openalex.org/W2109248504","https://openalex.org/W2109715166","https://openalex.org/W2109931140","https://openalex.org/W2113019448","https://openalex.org/W2113613985","https://openalex.org/W2113654464","https://openalex.org/W2116117181","https://openalex.org/W2116504907","https://openalex.org/W2117805756","https://openalex.org/W2118091426","https://openalex.org/W2121343862","https://openalex.org/W2122863289","https://openalex.org/W2123501554","https://openalex.org/W2124166542","https://openalex.org/W2124354935","https://openalex.org/W2124463526","https://openalex.org/W2124567458","https://openalex.org/W2127637605","https://openalex.org/W2130687290","https://openalex.org/W2136316164","https://openalex.org/W2137492047","https://openalex.org/W2138551420","https://openalex.org/W2145427519","https://openalex.org/W2145753039","https://openalex.org/W2146312020","https://openalex.org/W2147068690","https://openalex.org/W2149310258","https://openalex.org/W2150123812","https://openalex.org/W2150671144","https://openalex.org/W2150681269","https://openalex.org/W2152336513","https://openalex.org/W2152358369","https://openalex.org/W2152568394","https://openalex.org/W2155723007","https://openalex.org/W2159080219","https://openalex.org/W2159675211","https://openalex.org/W2160283348","https://openalex.org/W2167385874","https://openalex.org/W2167869241","https://openalex.org/W2168708357","https://openalex.org/W2531563875","https://openalex.org/W4252706339","https://openalex.org/W4300995828"],"related_works":["https://openalex.org/W2152546257","https://openalex.org/W2174809885","https://openalex.org/W2018720220","https://openalex.org/W1500663296","https://openalex.org/W4252442860","https://openalex.org/W3159731292","https://openalex.org/W2883025420","https://openalex.org/W2057191541","https://openalex.org/W2949296710","https://openalex.org/W1992658754"],"abstract_inverted_index":{"Our":[0],"phylogeny-guided":[1],"approach":[2],"compares":[3],"favorably":[4],"to":[5,52,55],"two":[6],"standard":[7],"methods":[8],"for":[9],"mapping":[10],"PPIs":[11],"across":[12],"species.":[13],"Detailed":[14],"analysis":[15],"of":[16,32],"predictions":[17],"in":[18,46],"selected":[19],"functional":[20],"modules":[21],"uncovers":[22],"specific":[23],"PPI":[24],"profiles":[25],"among":[26],"homologous":[27],"proteins,":[28],"establishing":[29],"interaction-based":[30],"partitioning":[31],"protein":[33],"families.":[34],"Provided":[35],"evidence":[36],"also":[37],"suggests":[38],"that":[39],"interactions":[40,59],"within":[41],"core":[42],"complex":[43],"subunits":[44],"are":[45],"general":[47],"more":[48],"conserved":[49],"and":[50],"easier":[51],"transfer":[53],"accurately":[54],"other":[56],"organisms,":[57],"than":[58],"between":[60],"these":[61],"subunits.":[62]},"counts_by_year":[{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":5}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
