{"id":"https://openalex.org/W2170310035","doi":"https://doi.org/10.1186/1471-2105-10-390","title":"iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis","display_name":"iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis","publication_year":2009,"publication_date":"2009-11-26","ids":{"openalex":"https://openalex.org/W2170310035","doi":"https://doi.org/10.1186/1471-2105-10-390","mag":"2170310035","pmid":"https://pubmed.ncbi.nlm.nih.gov/19941647"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-390","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-390","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-390","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-390","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012115652","display_name":"Gernot Stocker","orcid":"https://orcid.org/0000-0001-8326-1852"},"institutions":[{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Gernot Stocker","raw_affiliation_strings":["Institute for Genomics and Bioinformatics, Graz University of Technology, Petersgasse 14, 8010 Graz, Austria. gernot.stocker@tugraz.at","Institute for Genomics and Bioinformatics, Graz University of Technology, Petersgasse 14, 8010, Graz, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genomics and Bioinformatics, Graz University of Technology, Petersgasse 14, 8010 Graz, Austria. gernot.stocker@tugraz.at","institution_ids":["https://openalex.org/I4092182"]},{"raw_affiliation_string":"Institute for Genomics and Bioinformatics, Graz University of Technology, Petersgasse 14, 8010, Graz, Austria","institution_ids":["https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109942744","display_name":"Maria Fischer","orcid":null},"institutions":[{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Maria Fischer","raw_affiliation_strings":["Institute for Genomics and Bioinformatics, Graz University of Technology, Petersgasse 14, 8010, Graz, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genomics and Bioinformatics, Graz University of Technology, Petersgasse 14, 8010, Graz, Austria","institution_ids":["https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066477976","display_name":"Dietmar Rieder","orcid":"https://orcid.org/0000-0003-1754-690X"},"institutions":[{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Dietmar Rieder","raw_affiliation_strings":["Institute for Genomics and Bioinformatics, Graz University of Technology, Petersgasse 14, 8010, Graz, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genomics and Bioinformatics, Graz University of Technology, Petersgasse 14, 8010, Graz, Austria","institution_ids":["https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062069569","display_name":"Gabriela Bindea","orcid":"https://orcid.org/0000-0001-6013-6645"},"institutions":[{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Gabriela Bindea","raw_affiliation_strings":["Institute for Genomics and Bioinformatics, Graz University of Technology, Petersgasse 14, 8010, Graz, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genomics and Bioinformatics, Graz University of Technology, Petersgasse 14, 8010, Graz, Austria","institution_ids":["https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108824021","display_name":"Simon Kainz","orcid":null},"institutions":[{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Simon Kainz","raw_affiliation_strings":["Institute for Genomics and Bioinformatics, Graz University of Technology, Petersgasse 14, 8010, Graz, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genomics and Bioinformatics, Graz University of Technology, Petersgasse 14, 8010, Graz, Austria","institution_ids":["https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054263714","display_name":"Michael Oberstolz","orcid":null},"institutions":[{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Michael Oberstolz","raw_affiliation_strings":["Institute for Genomics and Bioinformatics, Graz University of Technology, Petersgasse 14, 8010, Graz, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genomics and Bioinformatics, Graz University of Technology, Petersgasse 14, 8010, Graz, Austria","institution_ids":["https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056179411","display_name":"James G. McNally","orcid":"https://orcid.org/0000-0002-9032-1988"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210149717","display_name":"Center for Cancer Research","ror":"https://ror.org/05bjen692","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James G McNally","raw_affiliation_strings":["Center for Cancer Research Core Imaging Facility, Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, National Institutes of Health, 41 Library Drive, Bethesda, MD, 20892, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cancer Research Core Imaging Facility, Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, National Institutes of Health, 41 Library Drive, Bethesda, MD, 20892, USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084751312","display_name":"Zlatko Trajanoski","orcid":"https://orcid.org/0000-0002-0636-7351"},"institutions":[{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Zlatko Trajanoski","raw_affiliation_strings":["Institute for Genomics and Bioinformatics, Graz University of Technology, Petersgasse 14, 8010, Graz, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genomics and Bioinformatics, Graz University of Technology, Petersgasse 14, 8010, Graz, Austria","institution_ids":["https://openalex.org/I4092182"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5084751312"],"corresponding_institution_ids":["https://openalex.org/I4092182"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.9441,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.9079134,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"10","issue":"1","first_page":"390","last_page":"390"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.37940001487731934,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.37940001487731934,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.11299999803304672,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.10119999945163727,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8170316815376282},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7357504963874817},{"id":"https://openalex.org/keywords/protocol","display_name":"Protocol (science)","score":0.6545819044113159},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.6295657753944397},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5751543641090393},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.5254496932029724},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.49315184354782104},{"id":"https://openalex.org/keywords/workflow-management-system","display_name":"Workflow management system","score":0.44277721643447876},{"id":"https://openalex.org/keywords/data-acquisition","display_name":"Data acquisition","score":0.43296200037002563},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4222596287727356},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.4149629771709442},{"id":"https://openalex.org/keywords/information-repository","display_name":"Information repository","score":0.4122697114944458},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.37949493527412415},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.278014600276947},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2654678225517273},{"id":"https://openalex.org/keywords/computer-data-storage","display_name":"Computer data storage","score":0.2098282277584076},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.13058361411094666},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.10805806517601013}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8170316815376282},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7357504963874817},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.6545819044113159},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.6295657753944397},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5751543641090393},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.5254496932029724},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.49315184354782104},{"id":"https://openalex.org/C140824633","wikidata":"https://www.wikidata.org/wiki/Q2808660","display_name":"Workflow management system","level":3,"score":0.44277721643447876},{"id":"https://openalex.org/C163985040","wikidata":"https://www.wikidata.org/wiki/Q1172399","display_name":"Data acquisition","level":2,"score":0.43296200037002563},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4222596287727356},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.4149629771709442},{"id":"https://openalex.org/C3102742","wikidata":"https://www.wikidata.org/wiki/Q6031177","display_name":"Information repository","level":3,"score":0.4122697114944458},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.37949493527412415},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.278014600276947},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2654678225517273},{"id":"https://openalex.org/C194739806","wikidata":"https://www.wikidata.org/wiki/Q66221","display_name":"Computer data storage","level":2,"score":0.2098282277584076},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.13058361411094666},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.10805806517601013},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-10-390","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-390","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-390","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19941647","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19941647","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:http://openlib.tugraz.at/56497b6f28db4","is_oa":true,"landing_page_url":"http://openlib.tugraz.at/56497b6f28db4","pdf_url":"http://openlib.tugraz.at/56497b6f28db4","source":{"id":"https://openalex.org/S4306400660","display_name":"TUGraz OPEN Library (Graz University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4092182","host_organization_name":"Graz University of Technology","host_organization_lineage":["https://openalex.org/I4092182"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:1895455","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2789074","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-390","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-390","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-390","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4399999976158142,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2170310035.pdf","grobid_xml":"https://content.openalex.org/works/W2170310035.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W66468161","https://openalex.org/W74040339","https://openalex.org/W80211950","https://openalex.org/W198133105","https://openalex.org/W1544923801","https://openalex.org/W1702681437","https://openalex.org/W1963542257","https://openalex.org/W1966621931","https://openalex.org/W1993896584","https://openalex.org/W2024991678","https://openalex.org/W2031095666","https://openalex.org/W2036212683","https://openalex.org/W2075326868","https://openalex.org/W2088429104","https://openalex.org/W2092481726","https://openalex.org/W2108923967","https://openalex.org/W2113153354","https://openalex.org/W2130018897","https://openalex.org/W2135010283","https://openalex.org/W2135557996","https://openalex.org/W2138825607","https://openalex.org/W2142549205","https://openalex.org/W2155337211","https://openalex.org/W2156877380"],"related_works":["https://openalex.org/W3104375528","https://openalex.org/W2971465916","https://openalex.org/W79458201","https://openalex.org/W2829508180","https://openalex.org/W375186264","https://openalex.org/W4283013042","https://openalex.org/W2610976040","https://openalex.org/W3095403507","https://openalex.org/W2989293188","https://openalex.org/W2492236688"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1],"recent":[2],"years,":[3],"the":[4,14,40,134,137,140,166,185,189],"genome":[5],"biology":[6],"community":[7],"has":[8,184],"expended":[9],"considerable":[10],"effort":[11],"to":[12,47,101,108,187],"confront":[13],"challenges":[15],"of":[16,61,67,139,200],"managing":[17],"heterogeneous":[18],"data":[19,88,121,125],"in":[20,75,153],"a":[21,72,94,128,143,149,176,204],"structured":[22],"and":[23,26,36,49,53,64,79,91,103,107,110,123,136,158,178,194,196],"organized":[24],"way":[25],"developed":[27,46,85],"laboratory":[28,68,112],"information":[29,96,180],"management":[30,60,97,181],"systems":[31],"(LIMS)":[32],"for":[33,203],"both":[34],"raw":[35],"processed":[37],"data.":[38,113],"On":[39],"other":[41],"hand,":[42],"electronic":[43,192],"notebooks":[44,193],"were":[45],"record":[48],"manage":[50,104],"scientific":[51,206],"data,":[52],"facilitate":[54],"data-sharing.":[55],"Software":[56],"which":[57,183],"enables":[58],"both,":[59],"large":[62],"datasets":[63],"digital":[65],"recording":[66],"procedures":[69],"would":[70],"serve":[71],"real":[73],"need":[74],"laboratories":[76],"using":[77,142],"medium":[78],"high-throughput":[80,124],"techniques.":[81],"RESULTS:":[82],"We":[83,132],"have":[84],"iLAP":[86,161,174],"(Laboratory":[87],"management,":[89],"Analysis,":[90],"Protocol":[92],"development),":[93],"workflow-driven":[95],"system":[98,115],"specifically":[99],"designed":[100],"create":[102],"experimental":[105,117],"protocols,":[106],"analyze":[109],"share":[111],"The":[114],"combines":[116],"protocol":[118,157],"development,":[119],"wizard-based":[120],"acquisition,":[122],"analysis":[126],"into":[127],"single,":[129],"integrated":[130],"system.":[131],"demonstrate":[133],"power":[135],"flexibility":[138],"platform":[141],"microscopy":[144],"case":[145],"study":[146],"based":[147],"on":[148],"combinatorial":[150],"multiple":[151],"fluorescence":[152],"situ":[154],"hybridization":[155],"(m-FISH)":[156],"3D-image":[159],"reconstruction.":[160],"is":[162,175],"freely":[163],"available":[164],"under":[165],"open":[167],"source":[168],"license":[169],"AGPL":[170],"from":[171],"http://genome.tugraz.at/iLAP/.":[172],"CONCLUSION:":[173],"flexible":[177],"versatile":[179],"system,":[182],"potential":[186],"close":[188],"gap":[190],"between":[191],"LIMS":[195],"can":[197],"therefore":[198],"be":[199],"great":[201],"value":[202],"broad":[205],"community.":[207]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":3}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
