{"id":"https://openalex.org/W2052093305","doi":"https://doi.org/10.1186/1471-2105-10-368","title":"A biosegmentation benchmark for evaluation of bioimage analysis methods","display_name":"A biosegmentation benchmark for evaluation of bioimage analysis methods","publication_year":2009,"publication_date":"2009-11-01","ids":{"openalex":"https://openalex.org/W2052093305","doi":"https://doi.org/10.1186/1471-2105-10-368","mag":"2052093305","pmid":"https://pubmed.ncbi.nlm.nih.gov/19878606"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-368","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-368","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-368","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-368","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018120737","display_name":"Elisa Drelie Gelasca","orcid":null},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Elisa Drelie Gelasca","raw_affiliation_strings":["Electrical and Computer Engineering Department, Center for Bio-Image Informatics, University of California Santa Barbara, CA 93106, USA. elisa.drelie@ieee.org","Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California Santa Barbara (UCSB), USA"],"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering Department, Center for Bio-Image Informatics, University of California Santa Barbara, CA 93106, USA. elisa.drelie@ieee.org","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California Santa Barbara (UCSB), USA","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091089738","display_name":"Bogus\u0142aw Obara","orcid":"https://orcid.org/0000-0003-4084-7778"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Boguslaw Obara","raw_affiliation_strings":["Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California Santa Barbara (UCSB), CA, 93106, USA","Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California Santa Barbara (UCSB), USA"],"affiliations":[{"raw_affiliation_string":"Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California Santa Barbara (UCSB), CA, 93106, USA","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California Santa Barbara (UCSB), USA","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028805270","display_name":"\u0414. \u0412. \u0424\u0435\u0434\u043e\u0440\u043e\u0432","orcid":"https://orcid.org/0000-0002-8572-896X"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dmitry Fedorov","raw_affiliation_strings":["Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California Santa Barbara (UCSB), CA, 93106, USA","Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California Santa Barbara (UCSB), USA"],"affiliations":[{"raw_affiliation_string":"Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California Santa Barbara (UCSB), CA, 93106, USA","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California Santa Barbara (UCSB), USA","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042602530","display_name":"Kristian Kvilekval","orcid":"https://orcid.org/0000-0001-8960-3104"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kristian Kvilekval","raw_affiliation_strings":["Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California Santa Barbara (UCSB), CA, 93106, USA","Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California Santa Barbara (UCSB), USA"],"affiliations":[{"raw_affiliation_string":"Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California Santa Barbara (UCSB), CA, 93106, USA","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California Santa Barbara (UCSB), USA","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045964903","display_name":"B. S. Manjunath","orcid":null},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"BS Manjunath","raw_affiliation_strings":["Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California Santa Barbara (UCSB), CA, 93106, USA","Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California Santa Barbara (UCSB), USA"],"affiliations":[{"raw_affiliation_string":"Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California Santa Barbara (UCSB), CA, 93106, USA","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California Santa Barbara (UCSB), USA","institution_ids":["https://openalex.org/I154570441"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5018120737"],"corresponding_institution_ids":["https://openalex.org/I154570441"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":6.5233,"has_fulltext":true,"cited_by_count":95,"citation_normalized_percentile":{"value":0.95628466,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"10","issue":"1","first_page":"368","last_page":"368"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.8148146867752075},{"id":"https://openalex.org/keywords/ground-truth","display_name":"Ground truth","score":0.8018702268600464},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7619191408157349},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.5751930475234985},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.556577742099762},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.5512996315956116},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.4737948775291443},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.47318243980407715},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.47085684537887573},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4624410569667816},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.44733676314353943},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.4461119771003723},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4328065514564514},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.42279577255249023},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.373992383480072}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.8148146867752075},{"id":"https://openalex.org/C146849305","wikidata":"https://www.wikidata.org/wiki/Q370766","display_name":"Ground truth","level":2,"score":0.8018702268600464},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7619191408157349},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.5751930475234985},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.556577742099762},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.5512996315956116},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.4737948775291443},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.47318243980407715},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.47085684537887573},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4624410569667816},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44733676314353943},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.4461119771003723},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4328065514564514},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.42279577255249023},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.373992383480072},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007089","descriptor_name":"Image Enhancement","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007089","descriptor_name":"Image Enhancement","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007089","descriptor_name":"Image Enhancement","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007089","descriptor_name":"Image Enhancement","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/1471-2105-10-368","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-368","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-368","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19878606","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19878606","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:dro.dur.ac.uk.OAI2:16240","is_oa":true,"landing_page_url":"http://dro.dur.ac.uk/16240/","pdf_url":null,"source":{"id":"https://openalex.org/S4377196258","display_name":"Durham Research Online (Durham University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I190082696","host_organization_name":"Durham University","host_organization_lineage":["https://openalex.org/I190082696"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"BMC bioinformatics, 2009, Vol.10, pp.368 [Peer Reviewed Journal]","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:11333caac11c4e2d92a30435a022cc96","is_oa":true,"landing_page_url":"https://doaj.org/article/11333caac11c4e2d92a30435a022cc96","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 10, Iss 1, p 368 (2009)","raw_type":"article"},{"id":"pmh:oai:durham-repository.worktribe.com:1474470","is_oa":true,"landing_page_url":"https://durham-repository.worktribe.com/output/1474470","pdf_url":null,"source":{"id":"https://openalex.org/S4306400188","display_name":"Durham Research Online (Durham University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I190082696","host_organization_name":"Durham University","host_organization_lineage":["https://openalex.org/I190082696"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"publishedVersion"},{"id":"pmh:oai:eprint.ncl.ac.uk:274710","is_oa":true,"landing_page_url":"https://eprint.ncl.ac.uk/274710","pdf_url":null,"source":{"id":"https://openalex.org/S4306402485","display_name":"Newcastle University ePrints (Newcastle Univesity)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I84884186","host_organization_name":"Newcastle University","host_organization_lineage":["https://openalex.org/I84884186"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:pubmedcentral.nih.gov:2777895","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2777895","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-368","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-368","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-368","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.6200000047683716,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1726460706","display_name":"III-CXT-Large: Working with Uncertain Data in Exploring Scientific Images","funder_award_id":"0808772","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3042470309","display_name":"Information Technology Research (ITR):  Next-Generation Bio-Molecular Imaging and Information Discovery","funder_award_id":"0331697","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3056042321","display_name":null,"funder_award_id":"III-0808772","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4739709993","display_name":null,"funder_award_id":"ITR-0331697","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7908228807","display_name":null,"funder_award_id":"Molecular","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320308380","display_name":"Yale University","ror":"https://ror.org/03v76x132"},{"id":"https://openalex.org/F4320309398","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055"},{"id":"https://openalex.org/F4320332500","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2052093305.pdf","grobid_xml":"https://content.openalex.org/works/W2052093305.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1590447294","https://openalex.org/W1676314349","https://openalex.org/W1966691944","https://openalex.org/W1971579914","https://openalex.org/W1971775491","https://openalex.org/W2020257956","https://openalex.org/W2033419168","https://openalex.org/W2073985768","https://openalex.org/W2096331886","https://openalex.org/W2115733720","https://openalex.org/W2116927907","https://openalex.org/W2120281095","https://openalex.org/W2121927366","https://openalex.org/W2125012216","https://openalex.org/W2126290670","https://openalex.org/W2140795069","https://openalex.org/W2141995813","https://openalex.org/W2163454682","https://openalex.org/W2189343552","https://openalex.org/W2214079758","https://openalex.org/W2339843299","https://openalex.org/W2483418315","https://openalex.org/W2789848387","https://openalex.org/W4285719527","https://openalex.org/W4362597616"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W2745001401","https://openalex.org/W4321353415","https://openalex.org/W2130974462","https://openalex.org/W2028665553","https://openalex.org/W2086519370","https://openalex.org/W4323323165","https://openalex.org/W2745033168","https://openalex.org/W3114272811","https://openalex.org/W4223555864"],"abstract_inverted_index":{"This":[0],"online":[1],"benchmark":[2],"will":[3,29],"facilitate":[4],"integration":[5],"and":[6,27,35,44],"comparison":[7],"of":[8,31],"image":[9,40,42],"analysis":[10],"methods":[11],"for":[12],"bioimages.":[13],"While":[14],"the":[15,25],"primary":[16],"focus":[17],"is":[18],"on":[19],"biological":[20,39],"images,":[21],"we":[22],"believe":[23],"that":[24],"dataset":[26],"infrastructure":[28],"be":[30],"interest":[32],"to":[33],"researchers":[34],"developers":[36],"working":[37],"with":[38],"analysis,":[41],"segmentation":[43],"object":[45],"tracking":[46],"in":[47],"general.":[48]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":6}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2016-06-24T00:00:00"}
