{"id":"https://openalex.org/W2109792786","doi":"https://doi.org/10.1186/1471-2105-10-360","title":"Inferring within-patient HIV-1 evolutionary dynamics under anti-HIV therapy using serial virus samples with vSPA","display_name":"Inferring within-patient HIV-1 evolutionary dynamics under anti-HIV therapy using serial virus samples with vSPA","publication_year":2009,"publication_date":"2009-10-29","ids":{"openalex":"https://openalex.org/W2109792786","doi":"https://doi.org/10.1186/1471-2105-10-360","mag":"2109792786","pmid":"https://pubmed.ncbi.nlm.nih.gov/19863822"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-360","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-360","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-360","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-360","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034238510","display_name":"Naoki Hasegawa","orcid":"https://orcid.org/0000-0003-0717-7450"},"institutions":[{"id":"https://openalex.org/I125602781","display_name":"Tokyo Medical and Dental University","ror":"https://ror.org/051k3eh31","country_code":"JP","type":"education","lineage":["https://openalex.org/I125602781"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Naoki Hasegawa","raw_affiliation_strings":["School of Biomedical Sciences, Medical and Dental University, Yushima 1-5-45, Bunkyo, Tokyo 113-8510, Japan. hasegawa@bioinfo.tmd.ac.jp","School of Biomedical Sciences, Medical and Dental University, Yushima 1-5-45, Bunkyo, Tokyo, 113-8510, Japan"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Sciences, Medical and Dental University, Yushima 1-5-45, Bunkyo, Tokyo 113-8510, Japan. hasegawa@bioinfo.tmd.ac.jp","institution_ids":["https://openalex.org/I125602781"]},{"raw_affiliation_string":"School of Biomedical Sciences, Medical and Dental University, Yushima 1-5-45, Bunkyo, Tokyo, 113-8510, Japan","institution_ids":["https://openalex.org/I125602781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032031868","display_name":"Wataru Sugiura","orcid":"https://orcid.org/0000-0002-3132-0918"},"institutions":[{"id":"https://openalex.org/I4210086300","display_name":"National Institute of Infectious Diseases","ror":"https://ror.org/001ggbx22","country_code":"JP","type":"government","lineage":["https://openalex.org/I1333985979","https://openalex.org/I4210086300"]},{"id":"https://openalex.org/I4210152596","display_name":"Nagoya Medical Center","ror":"https://ror.org/04ftw3n55","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I4210137409","https://openalex.org/I4210152596"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Wataru Sugiura","raw_affiliation_strings":["AIDS Research Center, National Institute of Infectious Diseases, Gakuen 4-7-1, Musashi-Murayama, 208-0011, Tokyo, Japan","Clinical Research Center, National Nagoya Medical Center, Sanno-Maru 4-1-1, Naka, Nagoya, Aichi, 460-0001, Japan"],"affiliations":[{"raw_affiliation_string":"AIDS Research Center, National Institute of Infectious Diseases, Gakuen 4-7-1, Musashi-Murayama, 208-0011, Tokyo, Japan","institution_ids":["https://openalex.org/I4210086300"]},{"raw_affiliation_string":"Clinical Research Center, National Nagoya Medical Center, Sanno-Maru 4-1-1, Naka, Nagoya, Aichi, 460-0001, Japan","institution_ids":["https://openalex.org/I4210152596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111853379","display_name":"Junko Shibata","orcid":null},"institutions":[{"id":"https://openalex.org/I125602781","display_name":"Tokyo Medical and Dental University","ror":"https://ror.org/051k3eh31","country_code":"JP","type":"education","lineage":["https://openalex.org/I125602781"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Junko Shibata","raw_affiliation_strings":["School of Biomedical Sciences, Medical and Dental University, Yushima 1-5-45, Bunkyo, Tokyo, 113-8510, Japan"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Sciences, Medical and Dental University, Yushima 1-5-45, Bunkyo, Tokyo, 113-8510, Japan","institution_ids":["https://openalex.org/I125602781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111629929","display_name":"Masakazu Matsuda","orcid":null},"institutions":[{"id":"https://openalex.org/I864419238","display_name":"Mitsubishi Materials (Japan)","ror":"https://ror.org/03p5evc41","country_code":"JP","type":"company","lineage":["https://openalex.org/I1306287861","https://openalex.org/I864419238"]},{"id":"https://openalex.org/I4210086300","display_name":"National Institute of Infectious Diseases","ror":"https://ror.org/001ggbx22","country_code":"JP","type":"government","lineage":["https://openalex.org/I1333985979","https://openalex.org/I4210086300"]},{"id":"https://openalex.org/I168192097","display_name":"Mitsubishi Chemical (Japan)","ror":"https://ror.org/05d8avs16","country_code":"JP","type":"company","lineage":["https://openalex.org/I168192097"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masakazu Matsuda","raw_affiliation_strings":["AIDS Research Center, National Institute of Infectious Diseases, Gakuen 4-7-1, Musashi-Murayama, 208-0011, Tokyo, Japan","Mitsubishi Chemical Medicine Corporation, Shimura 3-30-1, Itabashi, Tokyo, 174-8555, Japan"],"affiliations":[{"raw_affiliation_string":"AIDS Research Center, National Institute of Infectious Diseases, Gakuen 4-7-1, Musashi-Murayama, 208-0011, Tokyo, Japan","institution_ids":["https://openalex.org/I4210086300"]},{"raw_affiliation_string":"Mitsubishi Chemical Medicine Corporation, Shimura 3-30-1, Itabashi, Tokyo, 174-8555, Japan","institution_ids":["https://openalex.org/I168192097","https://openalex.org/I864419238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019673485","display_name":"Fengrong Ren","orcid":null},"institutions":[{"id":"https://openalex.org/I125602781","display_name":"Tokyo Medical and Dental University","ror":"https://ror.org/051k3eh31","country_code":"JP","type":"education","lineage":["https://openalex.org/I125602781"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Fengrong Ren","raw_affiliation_strings":["Center for Information Medicine, Medical and Dental University, Yushima 1-5-45, Bunkyo, Tokyo, 113-8510, Japan"],"affiliations":[{"raw_affiliation_string":"Center for Information Medicine, Medical and Dental University, Yushima 1-5-45, Bunkyo, Tokyo, 113-8510, Japan","institution_ids":["https://openalex.org/I125602781"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032740583","display_name":"Hiroshi Tanaka","orcid":"https://orcid.org/0000-0001-7057-813X"},"institutions":[{"id":"https://openalex.org/I125602781","display_name":"Tokyo Medical and Dental University","ror":"https://ror.org/051k3eh31","country_code":"JP","type":"education","lineage":["https://openalex.org/I125602781"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hiroshi Tanaka","raw_affiliation_strings":["Center for Information Medicine, Medical and Dental University, Yushima 1-5-45, Bunkyo, Tokyo, 113-8510, Japan","School of Biomedical Sciences, Medical and Dental University, Yushima 1-5-45, Bunkyo, Tokyo, 113-8510, Japan"],"affiliations":[{"raw_affiliation_string":"Center for Information Medicine, Medical and Dental University, Yushima 1-5-45, Bunkyo, Tokyo, 113-8510, Japan","institution_ids":["https://openalex.org/I125602781"]},{"raw_affiliation_string":"School of Biomedical Sciences, Medical and Dental University, Yushima 1-5-45, Bunkyo, Tokyo, 113-8510, Japan","institution_ids":["https://openalex.org/I125602781"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5034238510"],"corresponding_institution_ids":["https://openalex.org/I125602781"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.5476,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.64829659,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"10","issue":"1","first_page":"360","last_page":"360"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10526","display_name":"HIV/AIDS drug development and treatment","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10151","display_name":"Hepatitis C virus research","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/2721","display_name":"Hepatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/viral-quasispecies","display_name":"Viral quasispecies","score":0.9011620283126831},{"id":"https://openalex.org/keywords/reverse-transcriptase","display_name":"Reverse transcriptase","score":0.554216742515564},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.4982149600982666},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4976806938648224},{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.4649573266506195},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45959362387657166},{"id":"https://openalex.org/keywords/viral-evolution","display_name":"Viral evolution","score":0.45690101385116577},{"id":"https://openalex.org/keywords/sampling","display_name":"Sampling (signal processing)","score":0.4441491961479187},{"id":"https://openalex.org/keywords/antiretroviral-therapy","display_name":"Antiretroviral therapy","score":0.4215892553329468},{"id":"https://openalex.org/keywords/mutation-rate","display_name":"Mutation rate","score":0.41859593987464905},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.39538219571113586},{"id":"https://openalex.org/keywords/viral-load","display_name":"Viral load","score":0.3900775909423828},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.37543028593063354},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.3551519513130188},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.24360167980194092},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.1785896122455597},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16172733902931213},{"id":"https://openalex.org/keywords/polymerase-chain-reaction","display_name":"Polymerase chain reaction","score":0.15031835436820984}],"concepts":[{"id":"https://openalex.org/C14500911","wikidata":"https://www.wikidata.org/wiki/Q3413375","display_name":"Viral quasispecies","level":4,"score":0.9011620283126831},{"id":"https://openalex.org/C156719811","wikidata":"https://www.wikidata.org/wiki/Q28774","display_name":"Reverse transcriptase","level":4,"score":0.554216742515564},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.4982149600982666},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4976806938648224},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.4649573266506195},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45959362387657166},{"id":"https://openalex.org/C8769409","wikidata":"https://www.wikidata.org/wiki/Q2066554","display_name":"Viral evolution","level":4,"score":0.45690101385116577},{"id":"https://openalex.org/C140779682","wikidata":"https://www.wikidata.org/wiki/Q210868","display_name":"Sampling (signal processing)","level":3,"score":0.4441491961479187},{"id":"https://openalex.org/C2993143319","wikidata":"https://www.wikidata.org/wiki/Q583050","display_name":"Antiretroviral therapy","level":4,"score":0.4215892553329468},{"id":"https://openalex.org/C98638677","wikidata":"https://www.wikidata.org/wiki/Q2067051","display_name":"Mutation rate","level":3,"score":0.41859593987464905},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.39538219571113586},{"id":"https://openalex.org/C142462285","wikidata":"https://www.wikidata.org/wiki/Q2528140","display_name":"Viral load","level":3,"score":0.3900775909423828},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.37543028593063354},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.3551519513130188},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.24360167980194092},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.1785896122455597},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16172733902931213},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.15031835436820984},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.0},{"id":"https://openalex.org/C2776408679","wikidata":"https://www.wikidata.org/wiki/Q708693","display_name":"Hepatitis C virus","level":3,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004279","descriptor_name":"DNA, Viral","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004279","descriptor_name":"DNA, Viral","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004279","descriptor_name":"DNA, Viral","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012194","descriptor_name":"RNA-Directed DNA Polymerase","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012194","descriptor_name":"RNA-Directed DNA Polymerase","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012194","descriptor_name":"RNA-Directed DNA Polymerase","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016333","descriptor_name":"HIV Protease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016333","descriptor_name":"HIV Protease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016333","descriptor_name":"HIV Protease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019380","descriptor_name":"Anti-HIV Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D019380","descriptor_name":"Anti-HIV Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D019380","descriptor_name":"Anti-HIV Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-10-360","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-360","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-360","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19863822","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19863822","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:a107e38ca8064743b636128eb71c6bc0","is_oa":true,"landing_page_url":"https://doaj.org/article/a107e38ca8064743b636128eb71c6bc0","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 10, Iss 1, p 360 (2009)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2776027","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2776027","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-360","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-360","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-360","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.8399999737739563,"display_name":"Good health and well-being"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320286","display_name":"University College London","ror":"https://ror.org/02jx3x895"},{"id":"https://openalex.org/F4320324799","display_name":"Tokyo Medical and Dental University","ror":"https://ror.org/051k3eh31"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2109792786.pdf","grobid_xml":"https://content.openalex.org/works/W2109792786.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W54382558","https://openalex.org/W842909456","https://openalex.org/W1844951369","https://openalex.org/W1945749361","https://openalex.org/W2003574450","https://openalex.org/W2014890179","https://openalex.org/W2022098233","https://openalex.org/W2036711150","https://openalex.org/W2059132547","https://openalex.org/W2060809008","https://openalex.org/W2065461553","https://openalex.org/W2076801511","https://openalex.org/W2079956666","https://openalex.org/W2093003172","https://openalex.org/W2094939159","https://openalex.org/W2097706568","https://openalex.org/W2099239034","https://openalex.org/W2102424972","https://openalex.org/W2102639311","https://openalex.org/W2103546861","https://openalex.org/W2111207219","https://openalex.org/W2114419043","https://openalex.org/W2115522523","https://openalex.org/W2120106220","https://openalex.org/W2125121305","https://openalex.org/W2144625133","https://openalex.org/W2149958386","https://openalex.org/W2154331465","https://openalex.org/W2158597791","https://openalex.org/W2159866605","https://openalex.org/W2170219825","https://openalex.org/W2171820897","https://openalex.org/W2317685534","https://openalex.org/W4239321771"],"related_works":["https://openalex.org/W2499594664","https://openalex.org/W1585581436","https://openalex.org/W2003574450","https://openalex.org/W4212841392","https://openalex.org/W4400470248","https://openalex.org/W4253376477","https://openalex.org/W2042807099","https://openalex.org/W2059132547","https://openalex.org/W1986863138","https://openalex.org/W2060809008"],"abstract_inverted_index":{"Given":[0],"that":[1],"many":[2],"new":[3],"anti-HIV":[4,35],"drugs":[5],"will":[6],"be":[7,15],"available":[8],"in":[9],"the":[10,22,30],"near":[11],"future,":[12],"vSPA":[13],"may":[14],"useful":[16],"for":[17],"quickly":[18],"providing":[19],"information":[20],"on":[21],"acquisition":[23],"of":[24],"HIV":[25,32],"drug-resistant":[26],"mutations":[27],"by":[28],"monitoring":[29],"within-patient":[31],"evolution":[33],"under":[34],"therapy":[36],"as":[37],"a":[38],"computational":[39],"approach.":[40]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
