{"id":"https://openalex.org/W2002438471","doi":"https://doi.org/10.1186/1471-2105-10-334","title":"Magallanes: a web services discovery and automatic workflow composition tool","display_name":"Magallanes: a web services discovery and automatic workflow composition tool","publication_year":2009,"publication_date":"2009-10-15","ids":{"openalex":"https://openalex.org/W2002438471","doi":"https://doi.org/10.1186/1471-2105-10-334","mag":"2002438471","pmid":"https://pubmed.ncbi.nlm.nih.gov/19832968"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-334","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-334","pdf_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-10-334.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-10-334.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039051926","display_name":"Javier R\u00edos","orcid":null},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Javier R\u00edos","raw_affiliation_strings":["Computer Architecture Department, University of Malaga, 29080, Malaga, Spain. jriosp@uma.es","Computer Architecture Department, University of Malaga, 29080, Malaga, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Architecture Department, University of Malaga, 29080, Malaga, Spain. jriosp@uma.es","institution_ids":["https://openalex.org/I82767444"]},{"raw_affiliation_string":"Computer Architecture Department, University of Malaga, 29080, Malaga, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065730184","display_name":"Johan Karlsson","orcid":"https://orcid.org/0000-0001-5158-9255"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Johan Karlsson","raw_affiliation_strings":["Computer Architecture Department, University of Malaga, 29080, Malaga, Spain","University of Malaga,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Architecture Department, University of Malaga, 29080, Malaga, Spain","institution_ids":["https://openalex.org/I82767444"]},{"raw_affiliation_string":"University of Malaga,","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082510742","display_name":"Oswaldo Trelles","orcid":"https://orcid.org/0000-0003-1554-8987"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Oswaldo Trelles","raw_affiliation_strings":["Computer Architecture Department, University of Malaga, 29080, Malaga, Spain","University of Malaga,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Architecture Department, University of Malaga, 29080, Malaga, Spain","institution_ids":["https://openalex.org/I82767444"]},{"raw_affiliation_string":"University of Malaga,","institution_ids":["https://openalex.org/I82767444"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5082510742"],"corresponding_institution_ids":["https://openalex.org/I82767444"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":11.638,"has_fulltext":true,"cited_by_count":31,"citation_normalized_percentile":{"value":0.979228,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"10","issue":"1","first_page":"334","last_page":"334"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.8773999810218811,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.8773999810218811,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.04320000112056732,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.008500000461935997,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7819849252700806},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7605047225952148},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.6040864586830139},{"id":"https://openalex.org/keywords/unix","display_name":"Unix","score":0.5917395949363708},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5896610021591187},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.5808680057525635},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.442937433719635},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.44015762209892273},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3477923274040222},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3295897841453552},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.22858992218971252}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7819849252700806},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7605047225952148},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.6040864586830139},{"id":"https://openalex.org/C112968700","wikidata":"https://www.wikidata.org/wiki/Q11368","display_name":"Unix","level":3,"score":0.5917395949363708},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5896610021591187},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.5808680057525635},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.442937433719635},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.44015762209892273},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3477923274040222},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3295897841453552},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.22858992218971252}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-10-334","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-334","pdf_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-10-334.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19832968","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19832968","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:DiVA.org:umu-33819","is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-33819","pdf_url":null,"source":{"id":"https://openalex.org/S4306400361","display_name":"DiVA at Ume\u00e5 University (Ume\u00e5 University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I90267481","host_organization_name":"Ume\u00e5 University","host_organization_lineage":["https://openalex.org/I90267481"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:doaj.org/article:f0434b85a2984e92940266c87ea74b11","is_oa":false,"landing_page_url":"https://doaj.org/article/f0434b85a2984e92940266c87ea74b11","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 10, Iss 1, p 334 (2009)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2771019","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2771019","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-334","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-334","pdf_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-10-334.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4099999964237213}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306217","display_name":"Alliance for Cancer Gene Therapy","ror":"https://ror.org/00mms0j12"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2002438471.pdf","grobid_xml":"https://content.openalex.org/works/W2002438471.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1647671624","https://openalex.org/W1980073965","https://openalex.org/W1996902131","https://openalex.org/W2001653627","https://openalex.org/W2009569628","https://openalex.org/W2013868755","https://openalex.org/W2020360970","https://openalex.org/W2071286514","https://openalex.org/W2076066161","https://openalex.org/W2115404220","https://openalex.org/W2117724905","https://openalex.org/W2142110984","https://openalex.org/W2161679242","https://openalex.org/W2168103533","https://openalex.org/W2169528473","https://openalex.org/W2282891966","https://openalex.org/W2342204193"],"related_works":["https://openalex.org/W2033889310","https://openalex.org/W644889988","https://openalex.org/W2086577855","https://openalex.org/W2119018183","https://openalex.org/W1575418055","https://openalex.org/W2496732697","https://openalex.org/W189459719","https://openalex.org/W1564198055","https://openalex.org/W2105855614","https://openalex.org/W1601019617"],"abstract_inverted_index":{"BACKGROUND:":[0],"To":[1],"aid":[2],"in":[3,24,141,180,182,214,221],"bioinformatics":[4,69],"data":[5,74,97],"processing":[6],"and":[7,72,88,133,144,154,177,193,202,217,229],"analysis,":[8],"an":[9,115],"increasing":[10],"number":[11],"of":[12,28,44,64,80,163,190,204,211,224,231],"web-based":[13],"applications":[14],"are":[15,178],"being":[16],"deployed.":[17],"Although":[18],"this":[19],"is":[20,58,82,127,156],"a":[21,59,101,105,121],"positive":[22],"circumstance":[23],"general,":[25],"the":[26,35,41,164,187,194,199,205,209,215,222,226],"proliferation":[27],"tools":[29,45,213],"makes":[30],"it":[31],"difficult":[32],"to":[33,50,85,99],"find":[34],"right":[36,42],"tool,":[37],"or":[38,117],"more":[39],"importantly,":[40],"set":[43],"that":[46,94],"can":[47,95,110],"work":[48],"together":[49,134],"solve":[51],"real":[52,183],"complex":[53],"problems.":[54],"RESULTS:":[55],"Magallanes":[56,81,136],"(Magellan)":[57],"versatile,":[60],"platform-independent":[61],"Java":[62],"library":[63],"algorithms":[65],"aimed":[66],"at":[67,158],"discovering":[68,228],"web":[70,90,171],"services":[71,91],"associated":[73],"types.":[75],"A":[76],"second":[77],"important":[78],"feature":[79],"its":[83],"ability":[84],"connect":[86],"available":[87,129,157],"compatible":[89],"into":[92],"workflows":[93],"process":[96],"sequentially":[98],"reach":[100],"desired":[102],"output":[103],"given":[104],"particular":[106],"input.":[107],"Magallanes'":[108,125],"capabilities":[109],"be":[111],"exploited":[112],"both":[113],"as":[114,186],"API":[116,126],"directly":[118],"accessed":[119],"through":[120],"graphic":[122],"user":[123,152],"interface.The":[124],"freely":[128],"for":[130],"academic":[131],"use,":[132],"with":[135,218],"application":[137],"has":[138],"been":[139,175],"tested":[140],"MS-Windows":[142],"XP":[143],"Unix-like":[145],"operating":[146],"systems.":[147],"Detailed":[148],"implementation":[149],"information,":[150],"including":[151,208],"manuals":[153],"tutorials,":[155],"http://www.bitlab-es.com/magallanes.":[159],"CONCLUSION:":[160],"Different":[161],"implementations":[162],"same":[165],"client":[166],"(web":[167],"page,":[168],"desktop":[169],"applications,":[170],"services,":[172],"etc.)":[173],"have":[174],"deployed":[176],"currently":[179],"use":[181],"installations":[184],"such":[185],"National":[188],"Institute":[189],"Bioinformatics":[191],"(Spain)":[192],"ACGT-EU":[195],"project.":[196],"This":[197],"shows":[198],"potential":[200],"utility":[201],"versatility":[203],"software":[206],"library,":[207],"integration":[210],"novel":[212],"domain":[216],"strong":[219],"evidences":[220],"line":[223],"facilitate":[225],"automatic":[227],"composition":[230],"workflows.":[232]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":4}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}