{"id":"https://openalex.org/W2071296046","doi":"https://doi.org/10.1186/1471-2105-10-320","title":"BIRI: a new approach for automatically discovering and indexing available public bioinformatics resources from the literature","display_name":"BIRI: a new approach for automatically discovering and indexing available public bioinformatics resources from the literature","publication_year":2009,"publication_date":"2009-10-07","ids":{"openalex":"https://openalex.org/W2071296046","doi":"https://doi.org/10.1186/1471-2105-10-320","mag":"2071296046","pmid":"https://pubmed.ncbi.nlm.nih.gov/19811635"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-320","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-320","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-320","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-320","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025732635","display_name":"Guillermo de la Calle","orcid":"https://orcid.org/0000-0002-8147-3576"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Guillermo de la Calle","raw_affiliation_strings":["Dept Inteligencia Artificial, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegancedo S/N, 28660 Boadilla del Monte, Madrid, Spain. gcalle@infomed.dia.fi.upm.es","Dept Inteligencia Artificial, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Boadilla del Monte, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept Inteligencia Artificial, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegancedo S/N, 28660 Boadilla del Monte, Madrid, Spain. gcalle@infomed.dia.fi.upm.es","institution_ids":["https://openalex.org/I88060688"]},{"raw_affiliation_string":"Dept Inteligencia Artificial, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Boadilla del Monte, Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042235673","display_name":"Miguel Garc\u00eda-Remesal","orcid":"https://orcid.org/0000-0002-5948-8691"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Miguel Garc\u00eda-Remesal","raw_affiliation_strings":["Dept Inteligencia Artificial, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegancedo S/N, 28660, Boadilla del Monte, Madrid, Spain","Dept Inteligencia Artificial, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Boadilla del Monte, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept Inteligencia Artificial, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegancedo S/N, 28660, Boadilla del Monte, Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]},{"raw_affiliation_string":"Dept Inteligencia Artificial, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Boadilla del Monte, Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024062552","display_name":"Stefano Della Chiesa","orcid":"https://orcid.org/0000-0002-6693-2199"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Stefano Chiesa","raw_affiliation_strings":["Dept Inteligencia Artificial, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegancedo S/N, 28660, Boadilla del Monte, Madrid, Spain","Dept Inteligencia Artificial, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Boadilla del Monte, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept Inteligencia Artificial, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegancedo S/N, 28660, Boadilla del Monte, Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]},{"raw_affiliation_string":"Dept Inteligencia Artificial, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Boadilla del Monte, Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105411716","display_name":"Diana de la Iglesia","orcid":"https://orcid.org/0000-0002-6920-4904"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Diana de la Iglesia","raw_affiliation_strings":["Dept Inteligencia Artificial, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegancedo S/N, 28660, Boadilla del Monte, Madrid, Spain","Dept Inteligencia Artificial, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Boadilla del Monte, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept Inteligencia Artificial, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegancedo S/N, 28660, Boadilla del Monte, Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]},{"raw_affiliation_string":"Dept Inteligencia Artificial, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Boadilla del Monte, Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069600756","display_name":"V\u00edctor Maojo","orcid":"https://orcid.org/0000-0001-5103-4292"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Victor Maojo","raw_affiliation_strings":["Dept Inteligencia Artificial, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegancedo S/N, 28660, Boadilla del Monte, Madrid, Spain","Dept Inteligencia Artificial, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Boadilla del Monte, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept Inteligencia Artificial, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegancedo S/N, 28660, Boadilla del Monte, Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]},{"raw_affiliation_string":"Dept Inteligencia Artificial, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Boadilla del Monte, Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5025732635","https://openalex.org/A5105411716"],"corresponding_institution_ids":["https://openalex.org/I88060688"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.4649,"has_fulltext":true,"cited_by_count":33,"citation_normalized_percentile":{"value":0.89005379,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"10","issue":"1","first_page":"320","last_page":"320"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8895999789237976,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8895999789237976,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.02669999934732914,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.023099999874830246,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7833453416824341},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.6689366102218628},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.6193546056747437},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6004002690315247},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.5634837746620178},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.5519843697547913},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5156213641166687},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5031501650810242},{"id":"https://openalex.org/keywords/index","display_name":"Index (typography)","score":0.5018539428710938},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.5017378330230713},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.47506946325302124},{"id":"https://openalex.org/keywords/web-resource","display_name":"Web resource","score":0.42853185534477234},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3964911699295044}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7833453416824341},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.6689366102218628},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.6193546056747437},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6004002690315247},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.5634837746620178},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.5519843697547913},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5156213641166687},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5031501650810242},{"id":"https://openalex.org/C2777382242","wikidata":"https://www.wikidata.org/wiki/Q6017816","display_name":"Index (typography)","level":2,"score":0.5018539428710938},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.5017378330230713},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.47506946325302124},{"id":"https://openalex.org/C65603577","wikidata":"https://www.wikidata.org/wiki/Q3427877","display_name":"Web resource","level":2,"score":0.42853185534477234},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3964911699295044},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-10-320","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-320","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-320","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19811635","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19811635","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:f8883a9176dd4bb5ac9a5970cf4cf7a3","is_oa":true,"landing_page_url":"https://doaj.org/article/f8883a9176dd4bb5ac9a5970cf4cf7a3","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 10, Iss 1, p 320 (2009)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2765974","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2765974","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-320","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-320","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-320","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.49000000953674316}],"awards":[{"id":"https://openalex.org/G2165473568","display_name":"International Cooperative Action on Grid Computing and Biomedical Informatics between the European Union, Latin America, the Western Balkans and North Africa","funder_award_id":"224176","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2311233821","display_name":null,"funder_award_id":"FP6-2005-IST-026996","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5483342299","display_name":null,"funder_award_id":"FP7-ICT","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6105094356","display_name":null,"funder_award_id":"ICT-2007-2","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320306217","display_name":"Alliance for Cancer Gene Therapy","ror":"https://ror.org/00mms0j12"},{"id":"https://openalex.org/F4320313831","display_name":"Comunidad de Madrid","ror":null},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320338370","display_name":"FP7 Information and Communication Technologies","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2071296046.pdf","grobid_xml":"https://content.openalex.org/works/W2071296046.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W18286363","https://openalex.org/W196501055","https://openalex.org/W1486722544","https://openalex.org/W1525320951","https://openalex.org/W1578304052","https://openalex.org/W1585685992","https://openalex.org/W1696998836","https://openalex.org/W1971098996","https://openalex.org/W1971935411","https://openalex.org/W1996902131","https://openalex.org/W2006785512","https://openalex.org/W2035032881","https://openalex.org/W2086927156","https://openalex.org/W2098162425","https://openalex.org/W2100157378","https://openalex.org/W2104990432","https://openalex.org/W2107523227","https://openalex.org/W2114857923","https://openalex.org/W2124617249","https://openalex.org/W2125148365","https://openalex.org/W2133034723","https://openalex.org/W2137653635","https://openalex.org/W2140728823","https://openalex.org/W2143969914","https://openalex.org/W2165428180","https://openalex.org/W2416576459","https://openalex.org/W2918103525"],"related_works":["https://openalex.org/W3024364549","https://openalex.org/W4206019083","https://openalex.org/W2048865712","https://openalex.org/W1976265003","https://openalex.org/W2370378377","https://openalex.org/W4237510188","https://openalex.org/W2130160813","https://openalex.org/W2054476758","https://openalex.org/W2403120993","https://openalex.org/W2371807696"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,67,129],"rapid":[2],"evolution":[3],"of":[4,19,121,159,169,174,188,198,215],"Internet":[5],"technologies":[6],"and":[7,36,54,86,90,204,207],"the":[8,13,17,43,64,127,144,175,179,196,212,224],"collaborative":[9],"approaches":[10],"that":[11],"dominate":[12],"field":[14],"have":[15,30,82],"stimulated":[16],"development":[18],"numerous":[20],"bioinformatics":[21,58,209],"resources.":[22,37,80,160,210],"To":[23,142],"address":[24],"this":[25,39,216],"new":[26,49,79],"framework,":[27],"several":[28],"initiatives":[29],"tried":[31],"to":[32,88,99,104,117,125,153],"organize":[33],"these":[34],"services":[35,85,138],"In":[38],"paper,":[40],"we":[41,147],"present":[42],"BioInformatics":[44],"Resource":[45],"Inventory":[46],"(BIRI),":[47],"a":[48,114,119,149,155],"approach":[50,200],"for":[51,201],"automatically":[52,72,202],"discovering":[53,203],"indexing":[55,205],"available":[56,235],"public":[57],"resources":[59,176],"using":[60,165],"information":[61],"extracted":[62],"from":[63],"scientific":[65],"literature.":[66],"index":[68],"generated":[69],"can":[70,132],"be":[71,133],"updated":[73],"by":[74,135,223],"adding":[75],"additional":[76],"manuscripts":[77],"describing":[78],"We":[81,112,161],"developed":[83,113],"web":[84,115,130,137,145,151],"applications":[87],"test":[89,143],"validate":[91],"our":[92,163,199],"approach.":[93],"It":[94],"has":[95],"not":[96],"been":[97],"designed":[98],"replace":[100],"current":[101,206],"indexes":[102],"but":[103],"extend":[105],"their":[106],"capabilities":[107],"with":[108],"richer":[109],"functionalities.":[110],"RESULTS:":[111],"service":[116,131],"provide":[118],"set":[120,168],"high-level":[122],"query":[123],"primitives":[124],"access":[126,154],"index.":[128],"used":[134],"third-party":[136],"or":[139],"web-based":[140],"applications.":[141],"service,":[146],"created":[148],"pilot":[150],"application":[152],"preliminary":[156],"knowledge":[157],"base":[158],"tested":[162],"tool":[164],"an":[166],"initial":[167],"400":[170],"abstracts.":[171],"Almost":[172],"90%":[173],"described":[177],"in":[178,226],"abstracts":[180],"were":[181,190],"correctly":[182],"classified.":[183],"More":[184],"than":[185],"500":[186],"descriptions":[187],"functionalities":[189],"extracted.":[191],"CONCLUSION:":[192],"These":[193],"experiments":[194],"suggest":[195],"feasibility":[197],"future":[208],"Given":[211],"domain-independent":[213],"characteristics":[214],"tool,":[217],"it":[218],"is":[219,234],"currently":[220],"being":[221],"applied":[222],"authors":[225],"other":[227],"areas,":[228],"such":[229],"as":[230],"medical":[231],"nanoinformatics.":[232],"BIRI":[233],"at":[236],"http://edelman.dia.fi.upm.es/biri/.":[237]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":7}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}
