{"id":"https://openalex.org/W2129935714","doi":"https://doi.org/10.1186/1471-2105-10-291","title":"Automated seeding of specialised wiki knowledgebases with BioKb","display_name":"Automated seeding of specialised wiki knowledgebases with BioKb","publication_year":2009,"publication_date":"2009-09-16","ids":{"openalex":"https://openalex.org/W2129935714","doi":"https://doi.org/10.1186/1471-2105-10-291","mag":"2129935714","pmid":"https://pubmed.ncbi.nlm.nih.gov/19758431"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-291","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-291","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-291","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-291","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016442507","display_name":"Jonathan Manning","orcid":"https://orcid.org/0000-0002-3483-8456"},"institutions":[{"id":"https://openalex.org/I4210151647","display_name":"Centre for Inflammation Research","ror":"https://ror.org/05wcr1b38","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210151647","https://openalex.org/I90344618","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Jonathan R Manning","raw_affiliation_strings":["Centres for Cardiovascular Science and Inflammation Research, Queen's Medical Research Institute, University of Edinburgh, EH16 4TJ, UK. jmanning@staffmail.ed.ac.uk","Centres for Cardiovascular Science and Inflammation Research, Queen's Medical Research Institute, University of Edinburgh, UK"],"affiliations":[{"raw_affiliation_string":"Centres for Cardiovascular Science and Inflammation Research, Queen's Medical Research Institute, University of Edinburgh, EH16 4TJ, UK. jmanning@staffmail.ed.ac.uk","institution_ids":["https://openalex.org/I4210151647"]},{"raw_affiliation_string":"Centres for Cardiovascular Science and Inflammation Research, Queen's Medical Research Institute, University of Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076001607","display_name":"Ann Hedley","orcid":"https://orcid.org/0000-0002-2090-8206"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]},{"id":"https://openalex.org/I4210151647","display_name":"Centre for Inflammation Research","ror":"https://ror.org/05wcr1b38","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210151647","https://openalex.org/I90344618","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I4210137227","display_name":"Queen's Medical Centre","ror":"https://ror.org/03ap6wx93","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1334287468","https://openalex.org/I4210137227"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ann Hedley","raw_affiliation_strings":["Centres for Cardiovascular Science and Inflammation Research, Queen's Medical Research Institute, University of Edinburgh, EH16 4TJ, UK","Centres for Cardiovascular Science and Inflammation Research, Queen's Medical Research Institute, University of Edinburgh, UK"],"affiliations":[{"raw_affiliation_string":"Centres for Cardiovascular Science and Inflammation Research, Queen's Medical Research Institute, University of Edinburgh, EH16 4TJ, UK","institution_ids":["https://openalex.org/I4210151647","https://openalex.org/I4210137227","https://openalex.org/I98677209"]},{"raw_affiliation_string":"Centres for Cardiovascular Science and Inflammation Research, Queen's Medical Research Institute, University of Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015684615","display_name":"John J. Mullins","orcid":"https://orcid.org/0000-0001-5745-5258"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]},{"id":"https://openalex.org/I4210151647","display_name":"Centre for Inflammation Research","ror":"https://ror.org/05wcr1b38","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210151647","https://openalex.org/I90344618","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I4210137227","display_name":"Queen's Medical Centre","ror":"https://ror.org/03ap6wx93","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1334287468","https://openalex.org/I4210137227"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"John J Mullins","raw_affiliation_strings":["Centres for Cardiovascular Science and Inflammation Research, Queen's Medical Research Institute, University of Edinburgh, EH16 4TJ, UK","Centres for Cardiovascular Science and Inflammation Research, Queen's Medical Research Institute, University of Edinburgh, UK"],"affiliations":[{"raw_affiliation_string":"Centres for Cardiovascular Science and Inflammation Research, Queen's Medical Research Institute, University of Edinburgh, EH16 4TJ, UK","institution_ids":["https://openalex.org/I4210151647","https://openalex.org/I4210137227","https://openalex.org/I98677209"]},{"raw_affiliation_string":"Centres for Cardiovascular Science and Inflammation Research, Queen's Medical Research Institute, University of Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036256051","display_name":"Donald R. Dunbar","orcid":"https://orcid.org/0000-0002-1953-5369"},"institutions":[{"id":"https://openalex.org/I4210151647","display_name":"Centre for Inflammation Research","ror":"https://ror.org/05wcr1b38","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210151647","https://openalex.org/I90344618","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I4210137227","display_name":"Queen's Medical Centre","ror":"https://ror.org/03ap6wx93","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1334287468","https://openalex.org/I4210137227"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Donald R Dunbar","raw_affiliation_strings":["Centres for Cardiovascular Science and Inflammation Research, Queen's Medical Research Institute, University of Edinburgh, EH16 4TJ, UK","Centres for Cardiovascular Science and Inflammation Research, Queen's Medical Research Institute, University of Edinburgh, UK"],"affiliations":[{"raw_affiliation_string":"Centres for Cardiovascular Science and Inflammation Research, Queen's Medical Research Institute, University of Edinburgh, EH16 4TJ, UK","institution_ids":["https://openalex.org/I4210151647","https://openalex.org/I4210137227","https://openalex.org/I98677209"]},{"raw_affiliation_string":"Centres for Cardiovascular Science and Inflammation Research, Queen's Medical Research Institute, University of Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5016442507"],"corresponding_institution_ids":["https://openalex.org/I4210151647","https://openalex.org/I98677209"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.15591703,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"10","issue":"1","first_page":"291","last_page":"291"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12478","display_name":"Wikis in Education and Collaboration","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/3315","display_name":"Communication"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9675999879837036,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7330058217048645},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.7204487323760986},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.5572418570518494},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.545038104057312},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4528650641441345},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.0873575508594513}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7330058217048645},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.7204487323760986},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.5572418570518494},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.545038104057312},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4528650641441345},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0873575508594513},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-10-291","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-291","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-291","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19758431","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19758431","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pure.ed.ac.uk:openaire/bb5d7210-3568-46f8-aa2d-f4db64d03d9f","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/bb5d7210-3568-46f8-aa2d-f4db64d03d9f","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Manning, J, Hedley, A, Mullins, J J & Dunbar, D R 2009, 'Automated seeding of specialised wiki knowledgebases with BioKb', BMC Bioinformatics, vol. 10, no. 291, pp. 1-9. https://doi.org/10.1186/1471-2105-10-291","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.ed.ac.uk:publications/bb5d7210-3568-46f8-aa2d-f4db64d03d9f","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/portal/en/publications/automated-seeding-of-specialised-wiki-knowledgebases-with-biokb(bb5d7210-3568-46f8-aa2d-f4db64d03d9f).html","pdf_url":"http://www.biomedcentral.com/1471-2105/10/291","source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:doaj.org/article:add7b741b6d6438a97c5b28a51dfa19f","is_oa":true,"landing_page_url":"https://doaj.org/article/add7b741b6d6438a97c5b28a51dfa19f","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 10, Iss 1, p 291 (2009)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2753848","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2753848","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-291","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-291","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-291","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G7407982985","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320319992","display_name":"British Heart Foundation","ror":"https://ror.org/02wdwnk04"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2129935714.pdf","grobid_xml":"https://content.openalex.org/works/W2129935714.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1606942977","https://openalex.org/W1973729426","https://openalex.org/W2010502047","https://openalex.org/W2044514479","https://openalex.org/W2050028106","https://openalex.org/W2068715309","https://openalex.org/W2091473053","https://openalex.org/W2098142488","https://openalex.org/W2102789902","https://openalex.org/W2109615707","https://openalex.org/W2119412782","https://openalex.org/W2132586689","https://openalex.org/W2140226087","https://openalex.org/W2145065529","https://openalex.org/W2155913521","https://openalex.org/W2159482845","https://openalex.org/W2159912353","https://openalex.org/W2166240615","https://openalex.org/W2166406784"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2981957539","https://openalex.org/W4287378204","https://openalex.org/W47352601","https://openalex.org/W2545422590","https://openalex.org/W4240705470","https://openalex.org/W2945311252","https://openalex.org/W631546281","https://openalex.org/W2266220644","https://openalex.org/W88292646"],"abstract_inverted_index":{"The":[0],"BioKb":[1],"system":[2],"is":[3],"available":[4],"from":[5],"http://www.bioinf.mvm.ed.ac.uk/twiki/bin/view/TWiki/BioKbPlugin":[6],"as":[7],"a":[8],"plugin":[9],"for":[10],"the":[11],"TWiki":[12],"engine.":[13]},"counts_by_year":[],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
