{"id":"https://openalex.org/W2129899810","doi":"https://doi.org/10.1186/1471-2105-10-289","title":"In Silico screening for functional candidates amongst hypothetical proteins","display_name":"In Silico screening for functional candidates amongst hypothetical proteins","publication_year":2009,"publication_date":"2009-09-16","ids":{"openalex":"https://openalex.org/W2129899810","doi":"https://doi.org/10.1186/1471-2105-10-289","mag":"2129899810","pmid":"https://pubmed.ncbi.nlm.nih.gov/19754976"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-289","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-289","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-289","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-289","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071554590","display_name":"Claus Desler","orcid":"https://orcid.org/0000-0002-0125-004X"},"institutions":[{"id":"https://openalex.org/I107707843","display_name":"Roskilde University","ror":"https://ror.org/014axpa37","country_code":"DK","type":"education","lineage":["https://openalex.org/I107707843"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Claus Desler","raw_affiliation_strings":["Department of Science, Systems and Models, Roskilde University, DK-4000 Roskilde, Denmark. cdesler@ruc.dk","Department of Science, Systems, and Models , Roskilde University , Roskilde , Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Science, Systems and Models, Roskilde University, DK-4000 Roskilde, Denmark. cdesler@ruc.dk","institution_ids":["https://openalex.org/I107707843"]},{"raw_affiliation_string":"Department of Science, Systems, and Models , Roskilde University , Roskilde , Denmark","institution_ids":["https://openalex.org/I107707843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043714986","display_name":"Prashanth Suravajhala","orcid":"https://orcid.org/0000-0002-8535-278X"},"institutions":[{"id":"https://openalex.org/I107707843","display_name":"Roskilde University","ror":"https://ror.org/014axpa37","country_code":"DK","type":"education","lineage":["https://openalex.org/I107707843"]},{"id":"https://openalex.org/I1331500379","display_name":"Centre for Development of Advanced Computing","ror":"https://ror.org/022abst40","country_code":"IN","type":"facility","lineage":["https://openalex.org/I1331500379","https://openalex.org/I4210121746"]}],"countries":["DK","IN"],"is_corresponding":false,"raw_author_name":"Prashanth Suravajhala","raw_affiliation_strings":["Centre for Development of Advanced Computing - Bioinformatics Team, Scientific and Engineering Computing Group, Pune University Campus, Pune, 411007, India","Department of Science, Systems and Models, Roskilde University, DK-4000, Roskilde, Denmark","Centre for Development of Advanced Computing - Bioinformatics Team, Scientific and Engineering Computing Group, Pune University Campus, Pune, India","Department of Science, Systems and Models, Roskilde University, Roskilde, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Development of Advanced Computing - Bioinformatics Team, Scientific and Engineering Computing Group, Pune University Campus, Pune, 411007, India","institution_ids":["https://openalex.org/I1331500379"]},{"raw_affiliation_string":"Department of Science, Systems and Models, Roskilde University, DK-4000, Roskilde, Denmark","institution_ids":["https://openalex.org/I107707843"]},{"raw_affiliation_string":"Centre for Development of Advanced Computing - Bioinformatics Team, Scientific and Engineering Computing Group, Pune University Campus, Pune, India","institution_ids":["https://openalex.org/I1331500379"]},{"raw_affiliation_string":"Department of Science, Systems and Models, Roskilde University, Roskilde, Denmark","institution_ids":["https://openalex.org/I107707843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038574428","display_name":"May Sanderhoff","orcid":null},"institutions":[{"id":"https://openalex.org/I107707843","display_name":"Roskilde University","ror":"https://ror.org/014axpa37","country_code":"DK","type":"education","lineage":["https://openalex.org/I107707843"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"May Sanderhoff","raw_affiliation_strings":["Department of Science, Systems and Models, Roskilde University, DK-4000, Roskilde, Denmark","Department of Science, Systems, and Models , Roskilde University , Roskilde , Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Science, Systems and Models, Roskilde University, DK-4000, Roskilde, Denmark","institution_ids":["https://openalex.org/I107707843"]},{"raw_affiliation_string":"Department of Science, Systems, and Models , Roskilde University , Roskilde , Denmark","institution_ids":["https://openalex.org/I107707843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112885142","display_name":"Merete Rasmussen","orcid":null},"institutions":[{"id":"https://openalex.org/I107707843","display_name":"Roskilde University","ror":"https://ror.org/014axpa37","country_code":"DK","type":"education","lineage":["https://openalex.org/I107707843"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Merete Rasmussen","raw_affiliation_strings":["Department of Science, Systems and Models, Roskilde University, DK-4000, Roskilde, Denmark","Department of Science, Systems, and Models , Roskilde University , Roskilde , Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Science, Systems and Models, Roskilde University, DK-4000, Roskilde, Denmark","institution_ids":["https://openalex.org/I107707843"]},{"raw_affiliation_string":"Department of Science, Systems, and Models , Roskilde University , Roskilde , Denmark","institution_ids":["https://openalex.org/I107707843"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075856075","display_name":"Lene Juel Rasmussen","orcid":"https://orcid.org/0000-0001-6864-963X"},"institutions":[{"id":"https://openalex.org/I107707843","display_name":"Roskilde University","ror":"https://ror.org/014axpa37","country_code":"DK","type":"education","lineage":["https://openalex.org/I107707843"]},{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"Lene Juel Rasmussen","raw_affiliation_strings":["Center for Healthy Aging, Faculty of Health Sciences, Copenhagen University, DK-2200, Copenhagen N, Denmark","Department of Science, Systems and Models, Roskilde University, DK-4000, Roskilde, Denmark","Center for Healthy Aging, Faculty of Health Sciences, Copenhagen University, Copenhagen N, Denmark","Department of Science, Systems and Models, Roskilde University, Roskilde, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Healthy Aging, Faculty of Health Sciences, Copenhagen University, DK-2200, Copenhagen N, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Department of Science, Systems and Models, Roskilde University, DK-4000, Roskilde, Denmark","institution_ids":["https://openalex.org/I107707843"]},{"raw_affiliation_string":"Center for Healthy Aging, Faculty of Health Sciences, Copenhagen University, Copenhagen N, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Department of Science, Systems and Models, Roskilde University, Roskilde, Denmark","institution_ids":["https://openalex.org/I107707843"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5075856075"],"corresponding_institution_ids":["https://openalex.org/I107707843","https://openalex.org/I124055696"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.3777,"has_fulltext":true,"cited_by_count":43,"citation_normalized_percentile":{"value":0.61807793,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"10","issue":"1","first_page":"289","last_page":"289"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.713100016117096,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.713100016117096,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.20329999923706055,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.017899999395012856,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.8629664182662964},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6582516431808472},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6280496716499329},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.5876954197883606},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.570949137210846},{"id":"https://openalex.org/keywords/human-proteome-project","display_name":"Human proteome project","score":0.5674041509628296},{"id":"https://openalex.org/keywords/pseudogene","display_name":"Pseudogene","score":0.5121011734008789},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4755142331123352},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.44363242387771606},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3406100571155548},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.33387941122055054},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.24240034818649292},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19470643997192383},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.17809876799583435},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.12594041228294373}],"concepts":[{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.8629664182662964},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6582516431808472},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6280496716499329},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.5876954197883606},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.570949137210846},{"id":"https://openalex.org/C94795543","wikidata":"https://www.wikidata.org/wiki/Q3813754","display_name":"Human proteome project","level":4,"score":0.5674041509628296},{"id":"https://openalex.org/C34957205","wikidata":"https://www.wikidata.org/wiki/Q277338","display_name":"Pseudogene","level":4,"score":0.5121011734008789},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4755142331123352},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.44363242387771606},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3406100571155548},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.33387941122055054},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.24240034818649292},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19470643997192383},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.17809876799583435},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.12594041228294373},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/1471-2105-10-289","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-289","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-289","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19754976","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19754976","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:0676fdde561d4c668fc5db4c0e3f8272","is_oa":true,"landing_page_url":"https://doaj.org/article/0676fdde561d4c668fc5db4c0e3f8272","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 10, Iss 1, p 289 (2009)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2758874","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2758874","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:Publications/1b087490-f53e-11de-a1c9-000ea68e967b","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401457","display_name":"RUCforsk (Roskilde University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I107707843","host_organization_name":"Roskilde University","host_organization_lineage":["https://openalex.org/I107707843"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/ce10a9a0-a05f-11df-928f-000ea68e967b","is_oa":false,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/ce10a9a0-a05f-11df-928f-000ea68e967b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Desler , C , Suravajhala , P , Sanderhoff , M , Rasmussen , M & Rasmussen , L J 2009 , ' In Silico screening for functional candidates amongst hypothetical proteins ' , BMC Bioinformatics , vol. 10 , pp. 289 . https://doi.org/10.1186/1471-2105-10-289","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:publications/1b087490-f53e-11de-a1c9-000ea68e967b","is_oa":true,"landing_page_url":"http://www.biomedcentral.com/1471-2105/10/289","pdf_url":null,"source":{"id":"https://openalex.org/S4306401457","display_name":"RUCforsk (Roskilde University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I107707843","host_organization_name":"Roskilde University","host_organization_lineage":["https://openalex.org/I107707843"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-289","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-289","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-289","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.7799999713897705}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310455","display_name":"Kr\u00e6ftens Bek\u00e6mpelse","ror":"https://ror.org/03ytt7k16"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2129899810.pdf","grobid_xml":"https://content.openalex.org/works/W2129899810.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W198085179","https://openalex.org/W1508304246","https://openalex.org/W1968050545","https://openalex.org/W1971393256","https://openalex.org/W1977922844","https://openalex.org/W1982441008","https://openalex.org/W1990670446","https://openalex.org/W2006209735","https://openalex.org/W2020220420","https://openalex.org/W2025348458","https://openalex.org/W2028858498","https://openalex.org/W2035663056","https://openalex.org/W2067511286","https://openalex.org/W2077574127","https://openalex.org/W2082778070","https://openalex.org/W2089047063","https://openalex.org/W2094027833","https://openalex.org/W2101117598","https://openalex.org/W2101327327","https://openalex.org/W2101901686","https://openalex.org/W2111127373","https://openalex.org/W2115998090","https://openalex.org/W2124285343","https://openalex.org/W2125079066","https://openalex.org/W2132781144","https://openalex.org/W2134278790","https://openalex.org/W2137353223","https://openalex.org/W2146620899","https://openalex.org/W2148258611","https://openalex.org/W2149822709","https://openalex.org/W2151790371","https://openalex.org/W2158173168","https://openalex.org/W2160677252","https://openalex.org/W2167345470","https://openalex.org/W2600206387","https://openalex.org/W4249680347","https://openalex.org/W6978974692"],"related_works":["https://openalex.org/W3092794487","https://openalex.org/W2094752534","https://openalex.org/W1982829397","https://openalex.org/W2885268310","https://openalex.org/W2347437365","https://openalex.org/W2106414650","https://openalex.org/W2025055488","https://openalex.org/W1999412725","https://openalex.org/W2575115220","https://openalex.org/W4390205769"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1],"definition":[2],"of":[3,29,37,39,44,54,60,72,76,83,114,120,135,170,201,215,256],"a":[4,8,34,67,80,133,222,225,245,262],"hypothetical":[5,55,77,97,137,187,204,233],"protein":[6,9,122],"is":[7,11,25,63],"that":[10,51,105],"predicted":[12,146,239],"to":[13,65,102,140,147,220,243,276],"be":[14,107,148,274],"expressed":[15,149],"from":[16,235],"an":[17,90],"open":[18],"reading":[19],"frame,":[20],"but":[21],"for":[22,282],"which":[23],"there":[24],"no":[26],"experimental":[27],"evidence":[28],"translation.":[30],"Hypothetical":[31],"proteins":[32,56,78,98,138,145,203,234],"constitute":[33],"substantial":[35],"fraction":[36],"proteomes":[38],"human":[40,136,202],"as":[41,43,186,194],"well":[42],"other":[45],"eukaryotes.":[46],"With":[47],"the":[48,52,58,70,74,112,126,144,160,198,231,236,278],"general":[49],"belief":[50],"majority":[53],"are":[57,99],"product":[59],"pseudogenes,":[61],"it":[62,131],"essential":[64],"have":[66,172,190,208,217,221,244,249,258],"tool":[68],"with":[69,79,154],"ability":[71],"pinpointing":[73],"minority":[75],"high":[81],"probability":[82],"being":[84],"expressed.":[85],"RESULTS:":[86],"Here,":[87],"we":[88,129,162],"present":[89],"in":[91,110,157,177,188,205,224,264,269,284,287],"silico":[92,270],"selection":[93,127,271],"strategy":[94,128,242,272],"where":[95],"eukaryotic":[96],"sorted":[100],"according":[101],"two":[103],"criteria":[104],"can":[106,273],"reliably":[108],"identified":[109],"silico:":[111],"presence":[113,119],"subcellular":[115],"targeting":[116],"signals":[117],"and":[118,142,180,213,254,286],"characterized":[121,193,212],"domains.":[123],"To":[124],"validate":[125],"applied":[130],"on":[132,164,174],"database":[134],"dating":[139],"2006":[141,179,237],"compared":[143],"by":[150,240,266],"our":[151,241,268],"selecting":[152],"strategy,":[153],"their":[155],"status":[156],"2008.":[158,181],"For":[159],"comparison":[161],"focused":[163,173],"mitochondrial":[165,226,246],"proteins,":[166,184],"since":[167],"considerable":[168],"amounts":[169],"research":[171],"this":[175],"field":[176],"between":[178],"Therefore,":[182],"many":[183],"defined":[185],"2006,":[189,206],"later":[191,209,250],"been":[192,210,218,251,260],"mitochondrial.":[195],"CONCLUSION:":[196],"Among":[197],"total":[199],"amount":[200],"21%":[207],"experimentally":[211,252],"6%":[214],"those":[216],"shown":[219],"role":[223,263],"context.":[227],"In":[228],"contrast,":[229],"among":[230],"selected":[232],"dataset,":[238],"role,":[247],"53-62%":[248],"characterized,":[253],"85%":[255],"these":[257],"actually":[259],"assigned":[261],"mitochondria":[265],"2008.Therefore":[267],"used":[275],"select":[277],"most":[279],"promising":[280],"candidates":[281],"subsequent":[283],"vitro":[285],"vivo":[288],"analyses.":[289]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":6},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-27T08:26:11.824852","created_date":"2025-10-10T00:00:00"}
