{"id":"https://openalex.org/W2057793636","doi":"https://doi.org/10.1186/1471-2105-10-283","title":"RRW: repeated random walks on genome-scale protein networks for local cluster discovery","display_name":"RRW: repeated random walks on genome-scale protein networks for local cluster discovery","publication_year":2009,"publication_date":"2009-09-09","ids":{"openalex":"https://openalex.org/W2057793636","doi":"https://doi.org/10.1186/1471-2105-10-283","mag":"2057793636","pmid":"https://pubmed.ncbi.nlm.nih.gov/19740439"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-283","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-283","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-283","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-283","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070011635","display_name":"Kathy Macropol","orcid":null},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kathy Macropol","raw_affiliation_strings":["Department of Computer Science, University of California, Santa Barbara, CA 93106, USA. kpm@cs.ucsb.edu","Department of Computer Science, University of California, Santa Barbara, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Santa Barbara, CA 93106, USA. kpm@cs.ucsb.edu","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"Department of Computer Science, University of California, Santa Barbara, USA#TAB#","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045764563","display_name":"Tolga Can","orcid":"https://orcid.org/0000-0002-5532-0154"},"institutions":[{"id":"https://openalex.org/I201799495","display_name":"Middle East Technical University","ror":"https://ror.org/014weej12","country_code":"TR","type":"education","lineage":["https://openalex.org/I201799495"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Tolga Can","raw_affiliation_strings":["Department of Computer Engineering, Middle East Technical University, 06531, Ankara, Turkey","Dept. of Computer Engineering, Middle East Technical University, Ankara, Turkey#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Middle East Technical University, 06531, Ankara, Turkey","institution_ids":["https://openalex.org/I201799495"]},{"raw_affiliation_string":"Dept. of Computer Engineering, Middle East Technical University, Ankara, Turkey#TAB#","institution_ids":["https://openalex.org/I201799495"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036639779","display_name":"Ambuj K. Singh","orcid":"https://orcid.org/0000-0002-1997-7140"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ambuj K Singh","raw_affiliation_strings":["Department of Computer Science, University of California, Santa Barbara, CA, 93106, USA","Department of Computer Science, University of California, Santa Barbara, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Santa Barbara, CA, 93106, USA","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"Department of Computer Science, University of California, Santa Barbara, USA#TAB#","institution_ids":["https://openalex.org/I154570441"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5070011635"],"corresponding_institution_ids":["https://openalex.org/I154570441"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":4.2811,"has_fulltext":true,"cited_by_count":192,"citation_normalized_percentile":{"value":0.95189591,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"10","issue":"1","first_page":"283","last_page":"283"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9833999872207642,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9833999872207642,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.0035000001080334187,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.003000000026077032,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7390338182449341},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6144007444381714},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5906134247779846},{"id":"https://openalex.org/keywords/random-walk","display_name":"Random walk","score":0.5402377247810364},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.5213747620582581},{"id":"https://openalex.org/keywords/complex-network","display_name":"Complex network","score":0.4633164405822754},{"id":"https://openalex.org/keywords/protein-interaction-networks","display_name":"Protein Interaction Networks","score":0.4544069170951843},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.45205989480018616},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4307391047477722},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.42161858081817627},{"id":"https://openalex.org/keywords/markov-chain","display_name":"Markov chain","score":0.4167565405368805},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.41654908657073975},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36997440457344055},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.3464754521846771},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3220664858818054},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.22869104146957397},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.15445196628570557},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15254071354866028},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1260228455066681},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10310938954353333},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.07907688617706299},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07478320598602295}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7390338182449341},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6144007444381714},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5906134247779846},{"id":"https://openalex.org/C121194460","wikidata":"https://www.wikidata.org/wiki/Q856741","display_name":"Random walk","level":2,"score":0.5402377247810364},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.5213747620582581},{"id":"https://openalex.org/C34947359","wikidata":"https://www.wikidata.org/wiki/Q665189","display_name":"Complex network","level":2,"score":0.4633164405822754},{"id":"https://openalex.org/C2909613950","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Protein Interaction Networks","level":3,"score":0.4544069170951843},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.45205989480018616},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4307391047477722},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.42161858081817627},{"id":"https://openalex.org/C98763669","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov chain","level":2,"score":0.4167565405368805},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.41654908657073975},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36997440457344055},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.3464754521846771},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3220664858818054},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.22869104146957397},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.15445196628570557},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15254071354866028},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1260228455066681},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10310938954353333},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.07907688617706299},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07478320598602295},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-10-283","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-283","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-283","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19740439","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19740439","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:590d7669ab674dcb942146733fc5faf8","is_oa":false,"landing_page_url":"https://doaj.org/article/590d7669ab674dcb942146733fc5faf8","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 10, Iss 1, p 283 (2009)","raw_type":"article"},{"id":"pmh:oai:open.metu.edu.tr:11511/47692","is_oa":false,"landing_page_url":"https://hdl.handle.net/11511/47692","pdf_url":null,"source":{"id":"https://openalex.org/S4306402495","display_name":"OpenMETU (Middle East Technical University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I201799495","host_organization_name":"Middle East Technical University","host_organization_lineage":["https://openalex.org/I201799495"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2748087","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2748087","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-283","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-283","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-283","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4471131474","display_name":"Scalable Querying and Mining of Graphs","funder_award_id":"0612327","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4723556032","display_name":"\u0130statistiksel metotlar ile genom-\u00f6l\u00e7ekli protein a\u011flar\u0131n\u0131n olu\u015fturulmas\u0131 ve analizi","funder_award_id":"106E128","funder_id":"https://openalex.org/F4320322626","funder_display_name":"T\u00fcrkiye Bilimsel ve Teknolojik Ara\u015ft\u0131rma Kurumu"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320322626","display_name":"T\u00fcrkiye Bilimsel ve Teknolojik Ara\u015ft\u0131rma Kurumu","ror":"https://ror.org/04w9kkr77"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2057793636.pdf","grobid_xml":"https://content.openalex.org/works/W2057793636.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W648165475","https://openalex.org/W1514107797","https://openalex.org/W1783384641","https://openalex.org/W1991645955","https://openalex.org/W2003652380","https://openalex.org/W2009320922","https://openalex.org/W2013502943","https://openalex.org/W2037036397","https://openalex.org/W2037122384","https://openalex.org/W2046618236","https://openalex.org/W2052652433","https://openalex.org/W2065304353","https://openalex.org/W2079007492","https://openalex.org/W2084619201","https://openalex.org/W2103017472","https://openalex.org/W2110587743","https://openalex.org/W2113654464","https://openalex.org/W2114598803","https://openalex.org/W2116251465","https://openalex.org/W2121564430","https://openalex.org/W2123012927","https://openalex.org/W2123500593","https://openalex.org/W2124166542","https://openalex.org/W2124354935","https://openalex.org/W2126991359","https://openalex.org/W2128817214","https://openalex.org/W2131456688","https://openalex.org/W2133299088","https://openalex.org/W2135098204","https://openalex.org/W2136850043","https://openalex.org/W2138582694","https://openalex.org/W2149310258","https://openalex.org/W2151176490","https://openalex.org/W2152360905","https://openalex.org/W2152495216","https://openalex.org/W2160556205","https://openalex.org/W2165533101","https://openalex.org/W2167869241","https://openalex.org/W2168702870","https://openalex.org/W6631253713"],"related_works":["https://openalex.org/W2070704205","https://openalex.org/W2353485001","https://openalex.org/W2578454336","https://openalex.org/W2057065397","https://openalex.org/W4229728790","https://openalex.org/W2045843285","https://openalex.org/W2180749449","https://openalex.org/W2075963387","https://openalex.org/W4311275500","https://openalex.org/W2049735364"],"abstract_inverted_index":{"BACKGROUND:":[0],"We":[1,49,69,90,126],"propose":[2],"an":[3],"efficient":[4],"and":[5,21,42,61,86,111,142,152,171],"biologically":[6],"sensitive":[7],"algorithm":[8],"based":[9],"on":[10,54],"repeated":[11],"random":[12],"walks":[13],"(RRW)":[14],"for":[15],"discovering":[16],"functional":[17,56],"modules,":[18],"e.g.,":[19],"complexes":[20,79],"pathways,":[22],"within":[23],"large-scale":[24],"protein":[25],"networks.":[26],"Compared":[27],"to":[28,106,130,187],"existing":[29],"cluster":[30],"identification":[31],"techniques,":[32,134],"RRW":[33,149],"implicitly":[34],"makes":[35],"use":[36],"of":[37,58,67,74,94,101,117,165,184],"network":[38,57],"topology,":[39],"edge":[40],"weights,":[41],"long":[43],"range":[44],"interactions":[45],"between":[46],"proteins.":[47,68],"RESULTS:":[48],"apply":[50],"the":[51,71,75,81,95,99,107,115,122,137,148,163,166,181],"proposed":[52],"technique":[53,160],"a":[55,144,159],"yeast":[59],"genes":[60],"accurately":[62],"identify":[63],"statistically":[64],"significant":[65,145],"clusters":[66,97],"validate":[70],"biological":[72,88,124],"significance":[73],"results":[76],"using":[77],"known":[78],"in":[80,121,147,173],"MIPS":[82,109],"complex":[83],"catalogue":[84],"database":[85],"well-characterized":[87],"processes.":[89],"find":[91,143,188],"that":[92,161],"90%":[93],"created":[96],"have":[98,114],"majority":[100,116],"their":[102,118],"catalogued":[103],"proteins":[104,119,190],"belonging":[105],"same":[108,123],"complex,":[110],"about":[112],"80%":[113],"involved":[120],"process.":[125],"compare":[127],"our":[128],"method":[129],"various":[131],"other":[132],"clustering":[133],"such":[135],"as":[136],"Markov":[138],"Clustering":[139],"Algorithm":[140],"(MCL),":[141],"improvement":[146],"clusters'":[150],"precision":[151],"accuracy":[153],"values.":[154],"CONCLUSION:":[155],"RRW,":[156],"which":[157],"is":[158,168],"exploits":[162],"topology":[164],"network,":[167],"more":[169],"precise":[170],"robust":[172],"finding":[174],"local":[175],"clusters.":[176,194],"In":[177],"addition,":[178],"it":[179],"has":[180],"added":[182],"flexibility":[183],"being":[185],"able":[186],"multi-functional":[189],"by":[191],"allowing":[192],"overlapping":[193]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":18},{"year":2017,"cited_by_count":14},{"year":2016,"cited_by_count":22},{"year":2015,"cited_by_count":13},{"year":2014,"cited_by_count":17},{"year":2013,"cited_by_count":16},{"year":2012,"cited_by_count":15}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}