{"id":"https://openalex.org/W1965256295","doi":"https://doi.org/10.1186/1471-2105-10-275","title":"Comparative study of gene set enrichment methods","display_name":"Comparative study of gene set enrichment methods","publication_year":2009,"publication_date":"2009-09-02","ids":{"openalex":"https://openalex.org/W1965256295","doi":"https://doi.org/10.1186/1471-2105-10-275","mag":"1965256295","pmid":"https://pubmed.ncbi.nlm.nih.gov/19725948"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-275","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-275","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-275","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-275","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033206305","display_name":"Luca Abatangelo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210146308","display_name":"Institute of Intelligent Systems for Automation","ror":"https://ror.org/051t1q308","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210146308","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Luca Abatangelo","raw_affiliation_strings":["Istituto di Studi sui Sistemi Intelligenti per l'Automazione, CNR, Bari, Italy. abatangelo@ba.issia.cnr.it","Istituto di Studi sui Sistemi Intelligenti per l'Automazione, Bari, Italy"],"affiliations":[{"raw_affiliation_string":"Istituto di Studi sui Sistemi Intelligenti per l'Automazione, CNR, Bari, Italy. abatangelo@ba.issia.cnr.it","institution_ids":["https://openalex.org/I4210146308"]},{"raw_affiliation_string":"Istituto di Studi sui Sistemi Intelligenti per l'Automazione, Bari, Italy","institution_ids":["https://openalex.org/I4210146308"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030870666","display_name":"Rosalia Maglietta","orcid":"https://orcid.org/0000-0001-8580-4806"},"institutions":[{"id":"https://openalex.org/I4210146308","display_name":"Institute of Intelligent Systems for Automation","ror":"https://ror.org/051t1q308","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210146308","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Rosalia Maglietta","raw_affiliation_strings":["Istituto di Studi sui Sistemi Intelligenti per l'Automazione, CNR, Via Amendola 122/D-I, Bari, Italy","Istituto di Studi sui Sistemi Intelligenti per l'Automazione, Bari, Italy"],"affiliations":[{"raw_affiliation_string":"Istituto di Studi sui Sistemi Intelligenti per l'Automazione, CNR, Via Amendola 122/D-I, Bari, Italy","institution_ids":["https://openalex.org/I4210146308"]},{"raw_affiliation_string":"Istituto di Studi sui Sistemi Intelligenti per l'Automazione, Bari, Italy","institution_ids":["https://openalex.org/I4210146308"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026077136","display_name":"Angela Distaso","orcid":null},"institutions":[{"id":"https://openalex.org/I4210146308","display_name":"Institute of Intelligent Systems for Automation","ror":"https://ror.org/051t1q308","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210146308","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Angela Distaso","raw_affiliation_strings":["Istituto di Studi sui Sistemi Intelligenti per l'Automazione, CNR, Via Amendola 122/D-I, Bari, Italy","Istituto di Studi sui Sistemi Intelligenti per l'Automazione, Bari, Italy"],"affiliations":[{"raw_affiliation_string":"Istituto di Studi sui Sistemi Intelligenti per l'Automazione, CNR, Via Amendola 122/D-I, Bari, Italy","institution_ids":["https://openalex.org/I4210146308"]},{"raw_affiliation_string":"Istituto di Studi sui Sistemi Intelligenti per l'Automazione, Bari, Italy","institution_ids":["https://openalex.org/I4210146308"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041558532","display_name":"A. D\u2019Addabbo","orcid":"https://orcid.org/0000-0002-3058-5340"},"institutions":[{"id":"https://openalex.org/I4210146308","display_name":"Institute of Intelligent Systems for Automation","ror":"https://ror.org/051t1q308","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210146308","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Annarita D'Addabbo","raw_affiliation_strings":["Istituto di Studi sui Sistemi Intelligenti per l'Automazione, CNR, Via Amendola 122/D-I, Bari, Italy","Istituto di Studi sui Sistemi Intelligenti per l'Automazione, Bari, Italy"],"affiliations":[{"raw_affiliation_string":"Istituto di Studi sui Sistemi Intelligenti per l'Automazione, CNR, Via Amendola 122/D-I, Bari, Italy","institution_ids":["https://openalex.org/I4210146308"]},{"raw_affiliation_string":"Istituto di Studi sui Sistemi Intelligenti per l'Automazione, Bari, Italy","institution_ids":["https://openalex.org/I4210146308"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074907814","display_name":"Teresa Maria Creanza","orcid":"https://orcid.org/0000-0003-4926-6451"},"institutions":[{"id":"https://openalex.org/I4210146308","display_name":"Institute of Intelligent Systems for Automation","ror":"https://ror.org/051t1q308","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210146308","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Teresa Maria Creanza","raw_affiliation_strings":["Istituto di Studi sui Sistemi Intelligenti per l'Automazione, CNR, Via Amendola 122/D-I, Bari, Italy","Istituto di Studi sui Sistemi Intelligenti per l'Automazione, Bari, Italy"],"affiliations":[{"raw_affiliation_string":"Istituto di Studi sui Sistemi Intelligenti per l'Automazione, CNR, Via Amendola 122/D-I, Bari, Italy","institution_ids":["https://openalex.org/I4210146308"]},{"raw_affiliation_string":"Istituto di Studi sui Sistemi Intelligenti per l'Automazione, Bari, Italy","institution_ids":["https://openalex.org/I4210146308"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014241799","display_name":"Sayan Mukherjee","orcid":"https://orcid.org/0000-0002-6715-3920"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sayan Mukherjee","raw_affiliation_strings":["Institute for Genome Science and Policy, Duke University, Durham, NC, USA","Institute for Genome Science and Policy, Duke University, Durham, USA"],"affiliations":[{"raw_affiliation_string":"Institute for Genome Science and Policy, Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Institute for Genome Science and Policy, Duke University, Durham, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045969357","display_name":"Nicola Ancona","orcid":"https://orcid.org/0000-0003-0065-0321"},"institutions":[{"id":"https://openalex.org/I4210146308","display_name":"Institute of Intelligent Systems for Automation","ror":"https://ror.org/051t1q308","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210146308","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Nicola Ancona","raw_affiliation_strings":["Istituto di Studi sui Sistemi Intelligenti per l'Automazione, CNR, Via Amendola 122/D-I, Bari, Italy","Istituto di Studi sui Sistemi Intelligenti per l'Automazione, Bari, Italy"],"affiliations":[{"raw_affiliation_string":"Istituto di Studi sui Sistemi Intelligenti per l'Automazione, CNR, Via Amendola 122/D-I, Bari, Italy","institution_ids":["https://openalex.org/I4210146308"]},{"raw_affiliation_string":"Istituto di Studi sui Sistemi Intelligenti per l'Automazione, Bari, Italy","institution_ids":["https://openalex.org/I4210146308"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5033206305"],"corresponding_institution_ids":["https://openalex.org/I4210146308"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.3699,"has_fulltext":true,"cited_by_count":120,"citation_normalized_percentile":{"value":0.92590685,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"10","issue":"1","first_page":"275","last_page":"275"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9474999904632568,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/statistic","display_name":"Statistic","score":0.611533522605896},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5896674394607544},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5568281412124634},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5335192084312439},{"id":"https://openalex.org/keywords/type-i-and-type-ii-errors","display_name":"Type I and type II errors","score":0.5233770608901978},{"id":"https://openalex.org/keywords/a-priori-and-a-posteriori","display_name":"A priori and a posteriori","score":0.48941269516944885},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45901480317115784},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4520183205604553},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4422786831855774},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.4349895417690277},{"id":"https://openalex.org/keywords/exact-test","display_name":"Exact test","score":0.4260554909706116},{"id":"https://openalex.org/keywords/sample-size-determination","display_name":"Sample size determination","score":0.42204025387763977},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3465387225151062},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33722057938575745},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.28353220224380493},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2351718544960022},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21196222305297852},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20907247066497803}],"concepts":[{"id":"https://openalex.org/C89128539","wikidata":"https://www.wikidata.org/wiki/Q1949963","display_name":"Statistic","level":2,"score":0.611533522605896},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5896674394607544},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5568281412124634},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5335192084312439},{"id":"https://openalex.org/C40696583","wikidata":"https://www.wikidata.org/wiki/Q989120","display_name":"Type I and type II errors","level":2,"score":0.5233770608901978},{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.48941269516944885},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45901480317115784},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4520183205604553},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4422786831855774},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.4349895417690277},{"id":"https://openalex.org/C191093355","wikidata":"https://www.wikidata.org/wiki/Q9250577","display_name":"Exact test","level":2,"score":0.4260554909706116},{"id":"https://openalex.org/C129848803","wikidata":"https://www.wikidata.org/wiki/Q2564360","display_name":"Sample size determination","level":2,"score":0.42204025387763977},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3465387225151062},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33722057938575745},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.28353220224380493},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2351718544960022},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21196222305297852},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20907247066497803},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-10-275","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-275","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-275","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19725948","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19725948","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:c1bfc9533c1e401eb7e5a06fb3cdc6d6","is_oa":true,"landing_page_url":"https://doaj.org/article/c1bfc9533c1e401eb7e5a06fb3cdc6d6","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 10, Iss 1, p 275 (2009)","raw_type":"article"},{"id":"pmh:oai:dukespace.lib.duke.edu:10161/10583","is_oa":true,"landing_page_url":"http://hdl.handle.net/10161/10583","pdf_url":null,"source":{"id":"https://openalex.org/S4306400687","display_name":"DukeSpace (Duke University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170897317","host_organization_name":"Duke University","host_organization_lineage":["https://openalex.org/I170897317"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2746222","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2746222","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-275","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-275","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-275","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7104441969","display_name":null,"funder_award_id":"PS_012","funder_id":"https://openalex.org/F4320326082","funder_display_name":"Regione Puglia"}],"funders":[{"id":"https://openalex.org/F4320326082","display_name":"Regione Puglia","ror":"https://ror.org/039k11f95"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1965256295.pdf","grobid_xml":"https://content.openalex.org/works/W1965256295.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1650797637","https://openalex.org/W1965653249","https://openalex.org/W1978499455","https://openalex.org/W1984792589","https://openalex.org/W1998902445","https://openalex.org/W2002719914","https://openalex.org/W2011912935","https://openalex.org/W2012009763","https://openalex.org/W2020859582","https://openalex.org/W2034269086","https://openalex.org/W2058451329","https://openalex.org/W2063335267","https://openalex.org/W2071514232","https://openalex.org/W2092095117","https://openalex.org/W2100668965","https://openalex.org/W2103543394","https://openalex.org/W2104353859","https://openalex.org/W2105494575","https://openalex.org/W2121277505","https://openalex.org/W2130410032","https://openalex.org/W2135230352","https://openalex.org/W2139036189","https://openalex.org/W2140576556","https://openalex.org/W2145813479","https://openalex.org/W2160821900","https://openalex.org/W2167119716","https://openalex.org/W2246309969","https://openalex.org/W2461504776","https://openalex.org/W3101608900","https://openalex.org/W4247934745"],"related_works":["https://openalex.org/W2060985069","https://openalex.org/W1607313810","https://openalex.org/W2047140783","https://openalex.org/W2314762346","https://openalex.org/W2272564853","https://openalex.org/W3088276941","https://openalex.org/W2056967931","https://openalex.org/W84084013","https://openalex.org/W2244339280","https://openalex.org/W3137029931"],"abstract_inverted_index":{"The":[0],"three":[1,27],"methods":[2,28,61],"considered":[3],"in":[4,15,36],"our":[5],"study":[6],"recover":[7],"relevant":[8],"gene":[9,39,84],"sets":[10],"known":[11],"to":[12,32,70],"be":[13,33],"deregulated":[14],"the":[16,26,53,66],"experimental":[17],"conditions":[18],"and":[19,29,59,65],"pathologies":[20],"analyzed.":[21],"There":[22],"are":[23],"differences":[24],"between":[25,57],"GSEA":[30],"seems":[31],"more":[34],"consistent":[35],"finding":[37],"enriched":[38],"sets,":[40],"although":[41],"no":[42],"method":[43],"uniformly":[44],"dominates":[45],"over":[46],"all":[47],"data":[48],"sets.":[49],"Our":[50],"analysis":[51],"highlights":[52],"deep":[54],"difference":[55],"existing":[56],"associative":[58],"predictive":[60],"for":[62,81],"detecting":[63],"enrichment":[64],"use":[67],"of":[68,74,83],"both":[69],"better":[71],"interpret":[72],"results":[73],"pathway":[75],"analysis.":[76],"We":[77],"close":[78],"with":[79],"suggestions":[80],"users":[82],"set":[85],"methods.":[86]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":12}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}