{"id":"https://openalex.org/W2104357712","doi":"https://doi.org/10.1186/1471-2105-10-264","title":"GEOGLE: context mining tool for the correlation between gene expression and the phenotypic distinction","display_name":"GEOGLE: context mining tool for the correlation between gene expression and the phenotypic distinction","publication_year":2009,"publication_date":"2009-08-25","ids":{"openalex":"https://openalex.org/W2104357712","doi":"https://doi.org/10.1186/1471-2105-10-264","mag":"2104357712","pmid":"https://pubmed.ncbi.nlm.nih.gov/19703314"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-264","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-264","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-264","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-264","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083562088","display_name":"Yao Yu","orcid":"https://orcid.org/0000-0002-2727-1746"},"institutions":[{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yao Yu","raw_affiliation_strings":["Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, PR China. yyu01@sibs.ac.cn","Graduate School of the Chinese Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, PR China. yyu01@sibs.ac.cn","institution_ids":["https://openalex.org/I4210106477"]},{"raw_affiliation_string":"Graduate School of the Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082656015","display_name":"Kang Tu","orcid":"https://orcid.org/0000-0003-4314-2896"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kang Tu","raw_affiliation_strings":["Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, PR, China","Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, PR, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005930092","display_name":"Siyuan Zheng","orcid":"https://orcid.org/0000-0002-1031-9424"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Siyuan Zheng","raw_affiliation_strings":["Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, PR, China","Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, PR, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100369197","display_name":"Yun Li","orcid":"https://orcid.org/0000-0001-8414-2724"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yun Li","raw_affiliation_strings":["College of life science and biotechnology, Shanghai Jiaotong University, Shanghai, 200240, PR, China","College of life science and biotechnology, Shanghai Tongji University, Shanghai, 200331, PR, China","Graduate School of the Chinese Academy of Sciences, Shanghai, 200031, PR, China","Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, PR, China","Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai, 200235, PR, China","Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of life science and biotechnology, Shanghai Jiaotong University, Shanghai, 200240, PR, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"College of life science and biotechnology, Shanghai Tongji University, Shanghai, 200331, PR, China","institution_ids":["https://openalex.org/I116953780"]},{"raw_affiliation_string":"Graduate School of the Chinese Academy of Sciences, Shanghai, 200031, PR, China","institution_ids":["https://openalex.org/I19820366"]},{"raw_affiliation_string":"Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, PR, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai, 200235, PR, China","institution_ids":["https://openalex.org/I4210162648"]},{"raw_affiliation_string":"Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076249394","display_name":"Guohui Ding","orcid":"https://orcid.org/0000-0002-2888-1335"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yun Li","raw_affiliation_strings":["College of life science and biotechnology, Shanghai Jiaotong University, Shanghai, 200240, PR, China","College of life science and biotechnology, Shanghai Tongji University, Shanghai, 200331, PR, China","Graduate School of the Chinese Academy of Sciences, Shanghai, 200031, PR, China","Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, PR, China","Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai, 200235, PR, China","Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of life science and biotechnology, Shanghai Jiaotong University, Shanghai, 200240, PR, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"College of life science and biotechnology, Shanghai Tongji University, Shanghai, 200331, PR, China","institution_ids":["https://openalex.org/I116953780"]},{"raw_affiliation_string":"Graduate School of the Chinese Academy of Sciences, Shanghai, 200031, PR, China","institution_ids":["https://openalex.org/I19820366"]},{"raw_affiliation_string":"Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, PR, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai, 200235, PR, China","institution_ids":["https://openalex.org/I4210162648"]},{"raw_affiliation_string":"Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041664384","display_name":"Jie Ping","orcid":"https://orcid.org/0000-0001-9907-5819"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guohui Ding","raw_affiliation_strings":["Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, PR, China","College of Life Science and Biotechnology, Shanghai JiaoTong University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, PR, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366"]},{"raw_affiliation_string":"College of Life Science and Biotechnology, Shanghai JiaoTong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084581495","display_name":"Pei Hao","orcid":"https://orcid.org/0000-0002-1498-7059"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Ping","raw_affiliation_strings":["College of life science and biotechnology, Shanghai Jiaotong University, Shanghai, 200240, PR, China","Chinese Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of life science and biotechnology, Shanghai Jiaotong University, Shanghai, 200240, PR, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Chinese Academy of Sciences","institution_ids":["https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084581495","display_name":"Pei Hao","orcid":"https://orcid.org/0000-0002-1498-7059"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Pei Hao","raw_affiliation_strings":["Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, PR, China","Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai, 200235, PR, China","Chinese Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, PR, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai, 200235, PR, China","institution_ids":["https://openalex.org/I4210162648"]},{"raw_affiliation_string":"Chinese Academy of Sciences","institution_ids":["https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008280608","display_name":"Yixue Li","orcid":"https://orcid.org/0000-0002-1198-7176"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yixue Li","raw_affiliation_strings":["College of life science and biotechnology, Shanghai Jiaotong University, Shanghai, 200240, PR, China","College of life science and biotechnology, Shanghai Tongji University, Shanghai, 200331, PR, China","Graduate School of the Chinese Academy of Sciences, Shanghai, 200031, PR, China","Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, PR, China","Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai, 200235, PR, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of life science and biotechnology, Shanghai Jiaotong University, Shanghai, 200240, PR, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"College of life science and biotechnology, Shanghai Tongji University, Shanghai, 200331, PR, China","institution_ids":["https://openalex.org/I116953780"]},{"raw_affiliation_string":"Graduate School of the Chinese Academy of Sciences, Shanghai, 200031, PR, China","institution_ids":["https://openalex.org/I19820366"]},{"raw_affiliation_string":"Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, PR, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai, 200235, PR, China","institution_ids":["https://openalex.org/I4210162648"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008280608","display_name":"Yixue Li","orcid":"https://orcid.org/0000-0002-1198-7176"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yixue Li","raw_affiliation_strings":["College of life science and biotechnology, Shanghai Jiaotong University, Shanghai, 200240, PR, China","College of life science and biotechnology, Shanghai Tongji University, Shanghai, 200331, PR, China","Graduate School of the Chinese Academy of Sciences, Shanghai, 200031, PR, China","Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, PR, China","Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai, 200235, PR, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of life science and biotechnology, Shanghai Jiaotong University, Shanghai, 200240, PR, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"College of life science and biotechnology, Shanghai Tongji University, Shanghai, 200331, PR, China","institution_ids":["https://openalex.org/I116953780"]},{"raw_affiliation_string":"Graduate School of the Chinese Academy of Sciences, Shanghai, 200031, PR, China","institution_ids":["https://openalex.org/I19820366"]},{"raw_affiliation_string":"Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, PR, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai, 200235, PR, China","institution_ids":["https://openalex.org/I4210162648"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5008280608","https://openalex.org/A5084581495","https://openalex.org/A5100369197"],"corresponding_institution_ids":["https://openalex.org/I116953780","https://openalex.org/I183067930","https://openalex.org/I19820366","https://openalex.org/I4210106477","https://openalex.org/I4210162648"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.3777,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.61572419,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"10","issue":"1","first_page":"264","last_page":"264"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5719000101089478,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5719000101089478,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.17839999496936798,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.16930000483989716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.7530524134635925},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.683130145072937},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6093709468841553},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.5673488974571228},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.5523873567581177},{"id":"https://openalex.org/keywords/correlation","display_name":"Correlation","score":0.5006110668182373},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.49248871207237244},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4646652936935425},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.43193376064300537},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4027405381202698},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3282473683357239},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2418464720249176},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08621677756309509},{"id":"https://openalex.org/keywords/paleontology","display_name":"Paleontology","score":0.056320756673812866}],"concepts":[{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.7530524134635925},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.683130145072937},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6093709468841553},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.5673488974571228},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.5523873567581177},{"id":"https://openalex.org/C117220453","wikidata":"https://www.wikidata.org/wiki/Q5172842","display_name":"Correlation","level":2,"score":0.5006110668182373},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.49248871207237244},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4646652936935425},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.43193376064300537},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4027405381202698},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3282473683357239},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2418464720249176},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08621677756309509},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.056320756673812866},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-10-264","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-264","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-264","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19703314","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19703314","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:a09d282624704a10ad1f04481242b98f","is_oa":false,"landing_page_url":"https://doaj.org/article/a09d282624704a10ad1f04481242b98f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 10, Iss 1, p 264 (2009)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2745391","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2745391","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-264","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-264","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-264","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2104357712.pdf","grobid_xml":"https://content.openalex.org/works/W2104357712.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1498013762","https://openalex.org/W1524141331","https://openalex.org/W1976626942","https://openalex.org/W1977918192","https://openalex.org/W1980548655","https://openalex.org/W1985098050","https://openalex.org/W1987400169","https://openalex.org/W2002259113","https://openalex.org/W2020541351","https://openalex.org/W2021426287","https://openalex.org/W2029980980","https://openalex.org/W2054628268","https://openalex.org/W2063993968","https://openalex.org/W2082668371","https://openalex.org/W2088853613","https://openalex.org/W2100239923","https://openalex.org/W2109814336","https://openalex.org/W2116343015","https://openalex.org/W2123756008","https://openalex.org/W2124201592","https://openalex.org/W2132844342","https://openalex.org/W2135207763","https://openalex.org/W2155402337","https://openalex.org/W2158940923","https://openalex.org/W2160450758","https://openalex.org/W2163001643","https://openalex.org/W2166373524","https://openalex.org/W2166666333","https://openalex.org/W2167119716"],"related_works":["https://openalex.org/W2392243736","https://openalex.org/W1840542775","https://openalex.org/W86652014","https://openalex.org/W2416830231","https://openalex.org/W179926425","https://openalex.org/W3003578468","https://openalex.org/W2336657400","https://openalex.org/W2328518092","https://openalex.org/W3101249758","https://openalex.org/W2086883243"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1,33],"the":[2,5,21,109,119,125,144,167,187],"post-genomic":[3],"era,":[4],"development":[6],"of":[7,16,92,115,139,147,177,197],"high-throughput":[8],"gene":[9,38,67,99,122,150,170,178],"expression":[10,39,68,123,140,151,171,179],"detection":[11],"technology":[12],"provides":[13,160],"huge":[14],"amounts":[15],"experimental":[17,82],"data,":[18],"which":[19],"challenges":[20],"traditional":[22,145],"pipelines":[23],"for":[24,66,79],"data":[25,141],"processing":[26],"and":[27,53,76,85,103,117,124,172,194],"analyzing":[28],"in":[29],"scientific":[30],"researches.":[31],"RESULTS:":[32],"our":[34],"work,":[35],"we":[36],"integrated":[37,130],"information":[40],"from":[41,48,57,112,181],"Gene":[42],"Expression":[43],"Omnibus":[44],"(GEO),":[45],"biomedical":[46,95],"ontology":[47],"Medical":[49],"Subject":[50],"Headings":[51],"(MeSH)":[52],"signaling":[54],"pathway":[55,101],"knowledge":[56],"sigPathway":[58],"entries":[59],"to":[60,89,165],"develop":[61],"a":[62,74,113,156,162],"context":[63],"mining":[64],"tool":[65,158],"analysis":[69],"-":[70],"GEOGLE.":[71],"GEOGLE":[72,107,154,198],"offers":[73],"rapid":[75],"convenient":[77],"way":[78,146,164],"searching":[80,138],"relevant":[81],"datasets,":[83],"pathways":[84],"biological":[86,188],"terms":[87],"according":[88],"multiple":[90],"types":[91],"queries:":[93],"including":[94],"vocabularies,":[96],"GDS":[97],"IDs,":[98,100],"names":[102],"signature":[104,110],"list.":[105],"Moreover,":[106],"summarizes":[108],"genes":[111],"subset":[114],"GDSes":[116],"estimates":[118],"correlation":[120,168],"between":[121,169],"phenotypic":[126,173],"distinction":[127,174],"with":[128],"an":[129],"p":[131],"value.":[132],"CONCLUSION:":[133],"This":[134],"approach":[135],"performing":[136],"global":[137],"may":[142],"expand":[143],"collecting":[148],"heterogeneous":[149],"experiment":[152],"data.":[153],"is":[155],"novel":[157],"that":[159],"researchers":[161],"quantitative":[163],"understand":[166],"through":[175],"meta-analysis":[176],"datasets":[180],"different":[182],"experiments,":[183],"as":[184,186],"well":[185],"meaning":[189],"behind.":[190],"The":[191],"web":[192],"site":[193],"user":[195],"guide":[196],"are":[199],"available":[200],"at:":[201],"http://omics.biosino.org:14000/kweb/workflow.jsp?id=00020.":[202]},"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-20T07:56:41.581041","created_date":"2025-10-10T00:00:00"}