{"id":"https://openalex.org/W2103316358","doi":"https://doi.org/10.1186/1471-2105-10-223","title":"Incorporating rich background knowledge for gene named entity classification and recognition","display_name":"Incorporating rich background knowledge for gene named entity classification and recognition","publication_year":2009,"publication_date":"2009-07-17","ids":{"openalex":"https://openalex.org/W2103316358","doi":"https://doi.org/10.1186/1471-2105-10-223","mag":"2103316358","pmid":"https://pubmed.ncbi.nlm.nih.gov/19615051"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-223","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-223","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-223","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-223","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100718350","display_name":"Yanpeng Li","orcid":"https://orcid.org/0000-0003-3365-6092"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]},{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yanpeng Li","raw_affiliation_strings":["Department of Computer Science and Engineering, Dalian University of Technology, Dalian, PR China. liyanpeng.lyp@gmail.com","Department of Computer Science and Engineering, Dalian Univ. of Technology, Dalian, China#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Dalian University of Technology, Dalian, PR China. liyanpeng.lyp@gmail.com","institution_ids":["https://openalex.org/I27357992","https://openalex.org/I4210092944"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Dalian Univ. of Technology, Dalian, China#TAB#","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023931221","display_name":"Hongfei Lin","orcid":"https://orcid.org/0000-0003-0872-7688"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]},{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongfei Lin","raw_affiliation_strings":["Department of Computer Science and Engineering, Dalian University of Technology, Dalian, PR, China","Department of Computer Science and Engineering, Dalian Univ. of Technology, Dalian, China#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Dalian University of Technology, Dalian, PR, China","institution_ids":["https://openalex.org/I27357992","https://openalex.org/I4210092944"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Dalian Univ. of Technology, Dalian, China#TAB#","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051597671","display_name":"Zhihao Yang","orcid":"https://orcid.org/0000-0001-6186-2024"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]},{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhihao Yang","raw_affiliation_strings":["Department of Computer Science and Engineering, Dalian University of Technology, Dalian, PR, China","Department of Computer Science and Engineering, Dalian Univ. of Technology, Dalian, China#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Dalian University of Technology, Dalian, PR, China","institution_ids":["https://openalex.org/I27357992","https://openalex.org/I4210092944"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Dalian Univ. of Technology, Dalian, China#TAB#","institution_ids":["https://openalex.org/I27357992"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100718350"],"corresponding_institution_ids":["https://openalex.org/I27357992","https://openalex.org/I4210092944"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":1.8887,"has_fulltext":true,"cited_by_count":46,"citation_normalized_percentile":{"value":0.85391322,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"10","issue":"1","first_page":"223","last_page":"223"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9710000157356262,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9710000157356262,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.014700000174343586,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0020000000949949026,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7442613840103149},{"id":"https://openalex.org/keywords/conditional-random-field","display_name":"Conditional random field","score":0.6997146606445312},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6609069108963013},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.600252628326416},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.5861599445343018},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5275537371635437},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5074581503868103},{"id":"https://openalex.org/keywords/f1-score","display_name":"F1 score","score":0.4940696060657501},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.48638322949409485},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.48538005352020264},{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.48041629791259766},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.45995983481407166},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.4321357011795044},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.32873693108558655},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11427456140518188}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7442613840103149},{"id":"https://openalex.org/C152565575","wikidata":"https://www.wikidata.org/wiki/Q1124538","display_name":"Conditional random field","level":2,"score":0.6997146606445312},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6609069108963013},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.600252628326416},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.5861599445343018},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5275537371635437},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5074581503868103},{"id":"https://openalex.org/C148524875","wikidata":"https://www.wikidata.org/wiki/Q6975395","display_name":"F1 score","level":2,"score":0.4940696060657501},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.48638322949409485},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.48538005352020264},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.48041629791259766},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.45995983481407166},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.4321357011795044},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.32873693108558655},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11427456140518188},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-10-223","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-223","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-223","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19615051","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19615051","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:31427b8c6491423581eb846cf8e25cb0","is_oa":true,"landing_page_url":"https://doaj.org/article/31427b8c6491423581eb846cf8e25cb0","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 10, Iss 1, p 223 (2009)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2725142","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2725142","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-223","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-223","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-223","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.800000011920929,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G7759839783","display_name":"WEB\u6587\u672c\u6316\u6398\u4e2d\u77e5\u8bc6\u6a21\u5f0f\u7684\u62bd\u53d6\u548c\u8bc4\u4ef7\u673a\u5236","funder_award_id":"60373095","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8956049863","display_name":"\u9762\u5411\u751f\u7269\u533b\u5b66\u9886\u57df\u7684\u6587\u672c\u6316\u6398\u6280\u672f\u7814\u7a76\u4e0e\u5e94\u7528","funder_award_id":"60673039","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2103316358.pdf","grobid_xml":"https://content.openalex.org/works/W2103316358.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W68900407","https://openalex.org/W1532325895","https://openalex.org/W1576520375","https://openalex.org/W1593045043","https://openalex.org/W2007709031","https://openalex.org/W2018874418","https://openalex.org/W2021331223","https://openalex.org/W2034517800","https://openalex.org/W2047782770","https://openalex.org/W2085678516","https://openalex.org/W2101265630","https://openalex.org/W2107005506","https://openalex.org/W2114361266","https://openalex.org/W2127008962","https://openalex.org/W2130903752","https://openalex.org/W2135912801","https://openalex.org/W2136504847","https://openalex.org/W2144896636","https://openalex.org/W2147880316","https://openalex.org/W2148540243","https://openalex.org/W2148603752","https://openalex.org/W2149078814","https://openalex.org/W2151296343","https://openalex.org/W2158388185","https://openalex.org/W2168905447","https://openalex.org/W2169918010","https://openalex.org/W2560674852","https://openalex.org/W2917293077","https://openalex.org/W4213009331","https://openalex.org/W4300022934","https://openalex.org/W6634442568"],"related_works":["https://openalex.org/W4250494529","https://openalex.org/W1964783010","https://openalex.org/W2399696375","https://openalex.org/W45206245","https://openalex.org/W2211396092","https://openalex.org/W2061834489","https://openalex.org/W3088215229","https://openalex.org/W2078793151","https://openalex.org/W3047727388","https://openalex.org/W3201257042"],"abstract_inverted_index":{"BACKGROUND:":[0],"Gene":[1],"named":[2,90,129],"entity":[3,91,130],"classification":[4,131],"and":[5,42,110,163,177,190],"recognition":[6,253],"are":[7,73],"crucial":[8],"preliminary":[9],"steps":[10],"of":[11,53,80,113,120,207,233,239,251,257],"text":[12],"mining":[13],"in":[14,24,60,69,117,127,140,169],"biomedical":[15],"literature.":[16],"Machine":[17],"learning":[18],"based":[19,199,226],"methods":[20],"have":[21,45],"been":[22],"used":[23],"this":[25,51,170],"area":[26],"with":[27,220,245],"great":[28],"success.":[29],"In":[30],"most":[31],"state-of-the-art":[32],"systems,":[33],"elaborately":[34],"designed":[35,135],"lexical":[36,158,180],"features,":[37],"such":[38],"as":[39],"words,":[40],"n-grams,":[41],"morphology":[43],"patterns,":[44],"played":[46],"a":[47,64,85,128,141,187,221],"central":[48],"part.":[49],"However,":[50],"type":[52],"feature":[54,61,94],"tends":[55],"to":[56,78,102,136],"cause":[57],"extreme":[58],"sparseness":[59],"space.":[62],"As":[63],"result,":[65],"out-of-vocabulary":[66],"(OOV)":[67],"terms":[68],"the":[70,178,201,218,237,240,249,252,258],"training":[71],"data":[72],"not":[74],"modeled":[75],"well":[76],"due":[77],"lack":[79],"information.":[81],"RESULTS:":[82],"We":[83,123],"propose":[84],"general":[86],"framework":[87,171],"for":[88,165],"gene":[89,227],"representation,":[92],"called":[93],"coupling":[95],"generalization":[96],"(FCG).":[97],"The":[98,148],"basic":[99],"idea":[100],"is":[101,134,261],"generate":[103],"higher":[104],"level":[105],"features":[106,116,153,159,181],"using":[107],"term":[108],"frequency":[109],"co-occurrence":[111],"information":[112],"highly":[114],"indicative":[115],"huge":[118],"amount":[119],"unlabeled":[121],"data.":[122],"examine":[124],"its":[125],"performance":[126,238],"task,":[132],"which":[133,235],"remove":[137],"non-gene":[138],"entries":[139],"large":[142],"dictionary":[143,203,219],"derived":[144],"from":[145],"online":[146],"resources.":[147],"results":[149],"show":[150],"that":[151],"new":[152],"generated":[154],"by":[155,160,243],"FCG":[156],"outperform":[157],"5.97":[161],"F-score":[162,206,232],"10.85":[164],"OOV":[166],"terms.":[167],"Also":[168],"each":[172],"extension":[173],"yields":[174],"significant":[175],"improvements":[176],"sparse":[179],"can":[182],"be":[183],"transformed":[184],"into":[185],"both":[186],"lower":[188],"dimensional":[189],"more":[191],"informative":[192],"representation.":[193],"A":[194,255],"forward":[195],"maximum":[196],"match":[197],"method":[198],"on":[200,209,248],"refined":[202],"produces":[204],"an":[205,231],"86.2":[208],"BioCreative":[210],"2":[211],"GM":[212],"test":[213],"set.":[214],"Then":[215],"we":[216],"combined":[217],"conditional":[222],"random":[223],"field":[224],"(CRF)":[225],"mention":[228],"tagger,":[229],"achieving":[230],"89.05,":[234],"improves":[236],"CRF-based":[241],"tagger":[242],"4.46":[244],"little":[246],"impact":[247],"efficiency":[250],"system.":[254],"demo":[256],"NER":[259],"system":[260],"available":[262],"at":[263],"http://202.118.75.18:8080/bioner.":[264]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":8}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
