{"id":"https://openalex.org/W1999417916","doi":"https://doi.org/10.1186/1471-2105-10-152","title":"Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach","display_name":"Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach","publication_year":2009,"publication_date":"2009-05-18","ids":{"openalex":"https://openalex.org/W1999417916","doi":"https://doi.org/10.1186/1471-2105-10-152","mag":"1999417916","pmid":"https://pubmed.ncbi.nlm.nih.gov/19450271"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-152","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-152","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-152","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-152","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110540557","display_name":"Alexandre P. Francisco","orcid":"https://orcid.org/0000-0003-4852-1641"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]},{"id":"https://openalex.org/I4210125590","display_name":"Institute for Systems Engineering and Computers","ror":"https://ror.org/033wn8m60","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210125590"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Alexandre P Francisco","raw_affiliation_strings":["Instituto de Engenharia de Sistemas e Computadores - ID em Lisboa, Lisboa, Portugal. aplf@kdbio.inesc-id.pt","Instituto de Engenharia de Sistemas e Computadores \u2013 ID em Lisboa, Rua Alves Redol 9, 1000-029, Lisboa, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores - ID em Lisboa, Lisboa, Portugal. aplf@kdbio.inesc-id.pt","institution_ids":["https://openalex.org/I121345201"]},{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores \u2013 ID em Lisboa, Rua Alves Redol 9, 1000-029, Lisboa, Portugal","institution_ids":["https://openalex.org/I4210125590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067223589","display_name":"Miguel Bugalho","orcid":"https://orcid.org/0000-0002-4630-9615"},"institutions":[{"id":"https://openalex.org/I203847022","display_name":"Instituto Polit\u00e9cnico de Lisboa","ror":"https://ror.org/04ea70f07","country_code":"PT","type":"education","lineage":["https://openalex.org/I203847022"]},{"id":"https://openalex.org/I4210125590","display_name":"Institute for Systems Engineering and Computers","ror":"https://ror.org/033wn8m60","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210125590"]},{"id":"https://openalex.org/I4387152517","display_name":"Instituto Superior T\u00e9cnico","ror":"https://ror.org/03db2by73","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103","https://openalex.org/I4387152517"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Miguel Bugalho","raw_affiliation_strings":["Instituto Superior T\u00e9cnico, Universidade T\u00e9cnica de Lisboa, Av. Rovisco Pais, 1049-001, Lisboa, Portugal","Instituto de Engenharia de Sistemas e Computadores \u2013 ID em Lisboa, Rua Alves Redol 9, 1000-029, Lisboa, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto Superior T\u00e9cnico, Universidade T\u00e9cnica de Lisboa, Av. Rovisco Pais, 1049-001, Lisboa, Portugal","institution_ids":["https://openalex.org/I203847022","https://openalex.org/I4387152517"]},{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores \u2013 ID em Lisboa, Rua Alves Redol 9, 1000-029, Lisboa, Portugal","institution_ids":["https://openalex.org/I4210125590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082344930","display_name":"M\u00e1rio Ramirez","orcid":"https://orcid.org/0000-0002-4084-6233"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"M\u00e1rio Ramirez","raw_affiliation_strings":["Instituto de Microbiologia/Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Av. Prof. Egas Moniz, 1649-028, Lisboa, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Microbiologia/Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Av. Prof. Egas Moniz, 1649-028, Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057086640","display_name":"Jo\u00e3o Andr\u00e9 Carri\u00e7o","orcid":"https://orcid.org/0000-0002-5274-2722"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]},{"id":"https://openalex.org/I4210125590","display_name":"Institute for Systems Engineering and Computers","ror":"https://ror.org/033wn8m60","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210125590"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Jo\u00e3o A Carri\u00e7o","raw_affiliation_strings":["Instituto de Engenharia de Sistemas e Computadores \u2013 ID em Lisboa, Rua Alves Redol 9, 1000-029, Lisboa, Portugal","Instituto de Microbiologia/Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Av. Prof. Egas Moniz, 1649-028, Lisboa, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores \u2013 ID em Lisboa, Rua Alves Redol 9, 1000-029, Lisboa, Portugal","institution_ids":["https://openalex.org/I4210125590"]},{"raw_affiliation_string":"Instituto de Microbiologia/Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Av. Prof. Egas Moniz, 1649-028, Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5057086640","https://openalex.org/A5082344930"],"corresponding_institution_ids":["https://openalex.org/I141596103","https://openalex.org/I4210125590"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":8.3294,"has_fulltext":true,"cited_by_count":644,"citation_normalized_percentile":{"value":0.9815572,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"10","issue":"1","first_page":"152","last_page":"152"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12951","display_name":"Burkholderia infections and melioidosis","score":0.6270999908447266,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12951","display_name":"Burkholderia infections and melioidosis","score":0.6270999908447266,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10486","display_name":"Salmonella and Campylobacter epidemiology","score":0.21400000154972076,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.0430000014603138,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multilocus-sequence-typing","display_name":"Multilocus sequence typing","score":0.9423419237136841},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7626729011535645},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.6151964664459229},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45579537749290466},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.18599370121955872},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.131107896566391}],"concepts":[{"id":"https://openalex.org/C77434933","wikidata":"https://www.wikidata.org/wiki/Q4043440","display_name":"Multilocus sequence typing","level":4,"score":0.9423419237136841},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7626729011535645},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6151964664459229},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45579537749290466},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.18599370121955872},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.131107896566391}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-10-152","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-152","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-152","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19450271","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19450271","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:b13038773a644226ac5b6f20f47b5dda","is_oa":false,"landing_page_url":"https://doaj.org/article/b13038773a644226ac5b6f20f47b5dda","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 10, Iss 1, p 152 (2009)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2705362","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2705362","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-152","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-152","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-152","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.6600000262260437}],"awards":[],"funders":[{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1999417916.pdf","grobid_xml":"https://content.openalex.org/works/W1999417916.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W313936236","https://openalex.org/W1965680834","https://openalex.org/W1987027200","https://openalex.org/W1991528957","https://openalex.org/W1994961086","https://openalex.org/W2005522415","https://openalex.org/W2005773688","https://openalex.org/W2021699663","https://openalex.org/W2024064654","https://openalex.org/W2047116215","https://openalex.org/W2051727227","https://openalex.org/W2053811167","https://openalex.org/W2055298722","https://openalex.org/W2073075763","https://openalex.org/W2075429769","https://openalex.org/W2082475697","https://openalex.org/W2100658172","https://openalex.org/W2100767188","https://openalex.org/W2102714169","https://openalex.org/W2107922964","https://openalex.org/W2109268199","https://openalex.org/W2134606926","https://openalex.org/W2134650310","https://openalex.org/W2142503351","https://openalex.org/W2145418594","https://openalex.org/W2146147262","https://openalex.org/W2147571700","https://openalex.org/W2149652290","https://openalex.org/W2151371624","https://openalex.org/W2157991545","https://openalex.org/W2159308620","https://openalex.org/W2161285632","https://openalex.org/W2293954298","https://openalex.org/W2324166574","https://openalex.org/W2340149117","https://openalex.org/W3145128584","https://openalex.org/W4210727445","https://openalex.org/W4255288880"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2941777425","https://openalex.org/W2132072542","https://openalex.org/W2030437188","https://openalex.org/W2130076355","https://openalex.org/W2145001255","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2137134809"],"abstract_inverted_index":{"BACKGROUND:":[0],"Multilocus":[1],"Sequence":[2],"Typing":[3],"(MLST)":[4],"is":[5,27,47,147,248,283,325],"a":[6,41,50,73,84,102,116,169,182,194,261,284],"frequently":[7],"used":[8,268],"typing":[9,311],"method":[10],"for":[11,181,197,227,298],"the":[12,15,30,53,67,78,93,99,128,137,144,157,162,174,188,191,219,249,252,272,275,289,303,315],"analysis":[13,76],"of":[14,20,32,77,81,86,101,108,119,141,173,190,211,251,254,274,279,288,296,317],"clonal":[16,112,120,126,158],"relationships":[17],"among":[18],"strains":[19,61],"several":[21,106,299],"clinically":[22],"relevant":[23],"microbial":[24],"species.":[25,301],"MLST":[26,212],"based":[28,313],"on":[29,314],"sequence":[31,54],"housekeeping":[33],"genes":[34],"that":[35,160,201,292],"result":[36,153],"in":[37,92,154,246],"each":[38,125],"strain":[39],"having":[40],"distinct":[42],"numerical":[43],"allelic":[44,70],"profile,":[45],"which":[46,131,151,198,266],"abbreviated":[48],"to":[49,136,187,269,308],"unique":[51],"identifier:":[52],"type":[55],"(ST).":[56],"The":[57,179],"relatedness":[58],"between":[59,69,133,218,319],"two":[60,220],"can":[62,152,267,305],"then":[63],"be":[64,264,306],"inferred":[65],"by":[66,114],"differences":[68,217,318],"profiles.":[71,321],"For":[72],"more":[74],"comprehensive":[75],"possible":[79],"patterns":[80,295],"evolutionary":[82],"descent,":[83],"set":[85,104],"rules":[87,97,129,163],"were":[88,214,222],"proposed":[89],"and":[90,122,216,224,239],"implemented":[91,245],"eBURST":[94,145,175,290],"algorithm.":[95],"These":[96],"allow":[98],"division":[100],"data":[103,209,213,312],"into":[105],"clusters":[107],"related":[109],"strains,":[110],"dubbed":[111],"complexes,":[113,159],"implementing":[115],"simple":[117],"model":[118],"expansion":[121],"diversification.":[123],"Within":[124],"complex,":[127],"identify":[130],"links":[132],"STs":[134],"correspond":[135],"most":[138],"probable":[139],"pattern":[140,278],"descent.":[142,280],"However,":[143],"algorithm":[146,176,304],"not":[148],"globally":[149,170,285],"optimized,":[150],"links,":[155],"within":[156],"violate":[161],"proposed.":[164],"RESULTS:":[165],"Here,":[166],"we":[167],"present":[168],"optimized":[171,286],"implementation":[172,287,324],"-":[177],"goeBURST.":[178],"search":[180],"global":[183],"optimal":[184,204],"solution":[185,205],"led":[186],"formalization":[189],"problem":[192],"as":[193],"graphic":[195],"matroid,":[196],"greedy":[199],"algorithms":[200],"provide":[202],"an":[203],"exist.":[206],"Several":[207],"public":[208],"sets":[210],"tested":[215],"implementations":[221],"found":[223],"are":[225],"discussed":[226],"five":[228],"bacterial":[229,300],"species:":[230],"Enterococcus":[231],"faecium,":[232],"Streptococcus":[233],"pneumoniae,":[234],"Burkholderia":[235],"pseudomallei,":[236],"Campylobacter":[237],"jejuni":[238],"Neisseria":[240],"spp..":[241],"A":[242,322],"novel":[243],"feature":[244],"goeBURST":[247,282],"representation":[250],"level":[253],"tiebreak":[255],"rule":[256],"reached":[257],"before":[258],"deciding":[259],"if":[260],"link":[262],"should":[263],"drawn,":[265],"visually":[270],"evaluate":[271],"reliability":[273],"represented":[276],"hypothetical":[277],"CONCLUSION:":[281],"algorithm,":[291],"identifies":[293],"alternative":[294],"descent":[297],"Furthermore,":[302],"applied":[307],"any":[309],"multilocus":[310],"number":[316],"numeric":[320],"software":[323],"available":[326],"at":[327],"http://goeBURST.phyloviz.net.":[328]},"counts_by_year":[{"year":2026,"cited_by_count":17},{"year":2025,"cited_by_count":42},{"year":2024,"cited_by_count":56},{"year":2023,"cited_by_count":43},{"year":2022,"cited_by_count":58},{"year":2021,"cited_by_count":71},{"year":2020,"cited_by_count":79},{"year":2019,"cited_by_count":37},{"year":2018,"cited_by_count":36},{"year":2017,"cited_by_count":44},{"year":2016,"cited_by_count":23},{"year":2015,"cited_by_count":26},{"year":2014,"cited_by_count":25},{"year":2013,"cited_by_count":39},{"year":2012,"cited_by_count":21}],"updated_date":"2026-07-31T08:31:51.225901","created_date":"2025-10-10T00:00:00"}
