{"id":"https://openalex.org/W2153693245","doi":"https://doi.org/10.1186/1471-2105-10-151","title":"MIMAS 3.0 is a Multiomics Information Management and Annotation System","display_name":"MIMAS 3.0 is a Multiomics Information Management and Annotation System","publication_year":2009,"publication_date":"2009-05-18","ids":{"openalex":"https://openalex.org/W2153693245","doi":"https://doi.org/10.1186/1471-2105-10-151","mag":"2153693245","pmid":"https://pubmed.ncbi.nlm.nih.gov/19450266"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-151","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-151","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-151","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-151","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046650365","display_name":"Alexandre Gattiker","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["CH","FR"],"is_corresponding":false,"raw_author_name":"Alexandre Gattiker","raw_affiliation_strings":["Inserm, U625, GERHM; IFR-140; Universit\u00e9 de Rennes 1, Rennes F-35042, France. alexandre.gattiker@epfl.ch","School of Life Sciences, Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL) and Swiss Institute of Bioinformatics (SIB), CH-1015, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Inserm, U625, GERHM; IFR-140; Universit\u00e9 de Rennes 1, Rennes F-35042, France. alexandre.gattiker@epfl.ch","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I56067802"]},{"raw_affiliation_string":"School of Life Sciences, Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL) and Swiss Institute of Bioinformatics (SIB), CH-1015, Lausanne, Switzerland","institution_ids":["https://openalex.org/I5124864","https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045634433","display_name":"Leandro C. Hermida","orcid":"https://orcid.org/0000-0003-3887-518X"},"institutions":[{"id":"https://openalex.org/I860889466","display_name":"Friedrich Miescher Institute","ror":"https://ror.org/01bmjkv45","country_code":"CH","type":"facility","lineage":["https://openalex.org/I860889466"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Leandro Hermida","raw_affiliation_strings":["Friedrich Miescher Institute for Biomedical Research, CH-4058, Basel, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Friedrich Miescher Institute for Biomedical Research, CH-4058, Basel, Switzerland","institution_ids":["https://openalex.org/I860889466"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066081150","display_name":"Robin Liechti","orcid":"https://orcid.org/0000-0001-8351-4776"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Robin Liechti","raw_affiliation_strings":["Swiss Institute of Bioinformatics, Vital-IT, CH-1015, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Vital-IT, CH-1015, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065825020","display_name":"Ioannis X\u00e9narios","orcid":"https://orcid.org/0000-0002-3413-6841"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Ioannis Xenarios","raw_affiliation_strings":["Swiss Institute of Bioinformatics, Vital-IT, CH-1015, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Vital-IT, CH-1015, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064301488","display_name":"Olivier Collin","orcid":"https://orcid.org/0000-0002-8959-8402"},"institutions":[{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olivier Collin","raw_affiliation_strings":["Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires (IRISA), Universit\u00e9 de Rennes 1, F-35042, Rennes, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires (IRISA), Universit\u00e9 de Rennes 1, F-35042, Rennes, France","institution_ids":["https://openalex.org/I2802519937","https://openalex.org/I56067802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008872013","display_name":"Jacques Rougemont","orcid":"https://orcid.org/0000-0002-0955-606X"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Jacques Rougemont","raw_affiliation_strings":["School of Life Sciences, Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL) and Swiss Institute of Bioinformatics (SIB), CH-1015, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences, Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL) and Swiss Institute of Bioinformatics (SIB), CH-1015, Lausanne, Switzerland","institution_ids":["https://openalex.org/I5124864","https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065603458","display_name":"Michael Primig","orcid":"https://orcid.org/0000-0002-2061-0119"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Michael Primig","raw_affiliation_strings":["Inserm, U625, GERHM; IFR-140, Universit\u00e9 de Rennes 1, F-35042, Rennes, France","Inserm, U625, GERHM","IFR-140, Universit\u00e9 de Rennes 1, F-35042, Rennes, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Inserm, U625, GERHM; IFR-140, Universit\u00e9 de Rennes 1, F-35042, Rennes, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I56067802"]},{"raw_affiliation_string":"Inserm, U625, GERHM","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"IFR-140, Universit\u00e9 de Rennes 1, F-35042, Rennes, France","institution_ids":["https://openalex.org/I56067802"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5065603458"],"corresponding_institution_ids":["https://openalex.org/I154526488","https://openalex.org/I56067802"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.5056,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.82158865,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"10","issue":"1","first_page":"151","last_page":"151"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9046000242233276,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9046000242233276,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.009399999864399433,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.009100000374019146,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6053457260131836},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5641714334487915},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5586392879486084},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5395940542221069},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5014989376068115},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4353596568107605},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.4199322760105133},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3891254961490631},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3411751389503479},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3201766312122345},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.26256754994392395},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24115610122680664},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.1747700572013855},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.12816885113716125},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12027496099472046}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6053457260131836},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5641714334487915},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5586392879486084},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5395940542221069},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5014989376068115},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4353596568107605},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.4199322760105133},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3891254961490631},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3411751389503479},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3201766312122345},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.26256754994392395},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24115610122680664},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.1747700572013855},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.12816885113716125},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12027496099472046},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1186/1471-2105-10-151","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-151","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-151","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19450266","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19450266","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:iris.unil.ch:iris/95310","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/95310","pdf_url":"https://iris.unil.ch/bitstreams/f0e4af9e-eabe-4764-989d-720ccc542047/download","source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:HAL:inserm-00516451v1","is_oa":true,"landing_page_url":"https://inserm.hal.science/inserm-00516451","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2009, 10, pp.151. &#x27E8;10.1186/1471-2105-10-151&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:bb938acc86b94c0697a1c79eb33eb9f4","is_oa":false,"landing_page_url":"https://doaj.org/article/bb938acc86b94c0697a1c79eb33eb9f4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 10, Iss 1, p 151 (2009)","raw_type":"article"},{"id":"pmh:oai:infoscience.epfl.ch:161330","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/161330","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2694794","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2694794","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:serval.unil.ch:BIB_2455DAB29335","is_oa":true,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_2455DAB29335","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, vol. 10, pp. 151","raw_type":"info:eu-repo/semantics/submittedVersion"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-151","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-151","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-151","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2776024449","display_name":null,"funder_award_id":"R07216NS","funder_id":"https://openalex.org/F4320320893","funder_display_name":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale"}],"funders":[{"id":"https://openalex.org/F4320320893","display_name":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale","ror":"https://ror.org/02vjkv261"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2153693245.pdf","grobid_xml":"https://content.openalex.org/works/W2153693245.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W3261618","https://openalex.org/W156171614","https://openalex.org/W617329964","https://openalex.org/W1483776324","https://openalex.org/W1486283310","https://openalex.org/W1521422937","https://openalex.org/W1541328608","https://openalex.org/W1544923801","https://openalex.org/W1583792241","https://openalex.org/W1702681437","https://openalex.org/W1779313875","https://openalex.org/W1806059209","https://openalex.org/W1966659219","https://openalex.org/W1981509058","https://openalex.org/W2017840637","https://openalex.org/W2024991678","https://openalex.org/W2026604330","https://openalex.org/W2043856222","https://openalex.org/W2054880642","https://openalex.org/W2066310505","https://openalex.org/W2083737836","https://openalex.org/W2086744446","https://openalex.org/W2102392482","https://openalex.org/W2107433421","https://openalex.org/W2113153354","https://openalex.org/W2120212303","https://openalex.org/W2126396457","https://openalex.org/W2126976614","https://openalex.org/W2129301079","https://openalex.org/W2130542009","https://openalex.org/W2141055794","https://openalex.org/W2141645735","https://openalex.org/W2143129697","https://openalex.org/W2148184912","https://openalex.org/W2160697532","https://openalex.org/W2167980479","https://openalex.org/W2171251030","https://openalex.org/W2911797862","https://openalex.org/W4248014834","https://openalex.org/W4405646406","https://openalex.org/W6758939535","https://openalex.org/W7042299681"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2380556100"],"abstract_inverted_index":{"BACKGROUND:":[0],"DNA":[1,37,192],"sequence":[2],"integrity,":[3],"mRNA":[4,180],"concentrations":[5],"and":[6,22,64,85,90,116,118,139,181,184,200,209,223,228],"protein-DNA":[7],"interactions":[8],"have":[9,40,155],"been":[10,41],"subject":[11],"to":[12,43,69,104,142],"genome-wide":[13],"analyses":[14],"based":[15],"on":[16,94,197],"microarrays":[17],"with":[18,47],"ever":[19],"increasing":[20],"efficiency":[21],"reliability":[23],"over":[24],"the":[25,53,143,158,161,167,185],"past":[26],"fifteen":[27],"years.":[28],"However,":[29],"very":[30],"recently":[31],"novel":[32,72],"technologies":[33],"for":[34,58,96,179],"Ultra":[35],"High-Throughput":[36],"Sequencing":[38],"(UHTS)":[39],"harnessed":[42],"study":[44],"these":[45,71],"phenomena":[46],"unprecedented":[48],"precision.":[49],"As":[50],"a":[51,82,150],"consequence,":[52],"extensive":[54],"bioinformatics":[55],"environment":[56],"available":[57,234],"array":[59],"data":[60,74,106,126,135,147,168],"management,":[61],"analysis,":[62],"interpretation":[63],"publication":[65],"must":[66],"be":[67],"extended":[68,157],"include":[70],"sequencing":[73],"types.":[75],"DESCRIPTION:":[76],"MIMAS":[77,100,230],"was":[78],"originally":[79],"conceived":[80],"as":[81,122,124],"simple,":[83],"convenient":[84],"local":[86],"Microarray":[87],"Information":[88,207],"Management":[89,208],"Annotation":[91,210],"System":[92],"focused":[93],"GeneChips":[95,174],"expression":[97,112],"profiling":[98],"studies.":[99],"3.0":[101,231],"enables":[102],"users":[103],"manage":[105],"from":[107],"high-density":[108],"oligonucleotide":[109],"SNP":[110],"Chips,":[111],"arrays":[113],"(both":[114],"3'UTR":[115],"tiling)":[117],"promoter":[119],"arrays,":[120],"BeadArrays":[121,178],"well":[123],"UHTS":[125],"using":[127,149],"MIAME-compliant":[128],"standardized":[129],"vocabulary.":[130],"Importantly,":[131],"researchers":[132],"can":[133],"export":[134],"in":[136,218,226],"MAGE-TAB":[137],"format":[138],"upload":[140],"them":[141],"EBI's":[144],"ArrayExpress":[145],"certified":[146],"repository":[148],"one-step":[151],"procedure.":[152],"CONCLUSION:":[153],"We":[154],"vastly":[156],"capability":[159],"of":[160,170,173],"system":[162],"such":[163],"that":[164],"it":[165],"processes":[166],"output":[169],"six":[171],"types":[172],"(Affymetrix),":[175],"two":[176],"different":[177],"miRNA":[182],"(Illumina)":[183],"Genome":[186],"Analyzer":[187],"(a":[188],"popular":[189],"Ultra-High":[190],"Throughput":[191],"Sequencer,":[193],"Illumina),":[194],"without":[195],"compromising":[196],"its":[198],"flexibility":[199],"user-friendliness.":[201],"MIMAS,":[202],"appropriately":[203],"renamed":[204],"into":[205],"Multiomics":[206],"System,":[211],"is":[212,232],"currently":[213],"used":[214],"by":[215],"scientists":[216],"working":[217],"approximately":[219],"50":[220],"academic":[221],"laboratories":[222],"genomics":[224],"platforms":[225],"Switzerland":[227],"France.":[229],"freely":[233],"via":[235],"http://multiomics.sourceforge.net/.":[236]},"counts_by_year":[{"year":2020,"cited_by_count":4},{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
