{"id":"https://openalex.org/W2145063082","doi":"https://doi.org/10.1186/1471-2105-10-118","title":"ACID: annotation of cassette and integron data","display_name":"ACID: annotation of cassette and integron data","publication_year":2009,"publication_date":"2009-04-21","ids":{"openalex":"https://openalex.org/W2145063082","doi":"https://doi.org/10.1186/1471-2105-10-118","mag":"2145063082","pmid":"https://pubmed.ncbi.nlm.nih.gov/19383137"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-118","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-118","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-118","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-118","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078751774","display_name":"Michael J. Joss","orcid":null},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]},{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Michael J Joss","raw_affiliation_strings":["Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, 02139, USA. Michael.joss@gmail.com","Department of Biological Sciences Macquarie University  Sydney Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, 02139, USA. Michael.joss@gmail.com","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Department of Biological Sciences Macquarie University  Sydney Australia","institution_ids":["https://openalex.org/I99043593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056719307","display_name":"Jeremy E. Koenig","orcid":null},"institutions":[{"id":"https://openalex.org/I129902397","display_name":"Dalhousie University","ror":"https://ror.org/01e6qks80","country_code":"CA","type":"education","lineage":["https://openalex.org/I129902397"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jeremy E Koenig","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, NS, B3H 1X5, Canada","Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, NS, B3H 1X5, Canada","institution_ids":["https://openalex.org/I129902397"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Canada","institution_ids":["https://openalex.org/I129902397"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085329542","display_name":"Maurizio Labbate","orcid":"https://orcid.org/0000-0003-1428-3382"},"institutions":[{"id":"https://openalex.org/I114017466","display_name":"University of Technology Sydney","ror":"https://ror.org/03f0f6041","country_code":"AU","type":"education","lineage":["https://openalex.org/I114017466"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Maurizio Labbate","raw_affiliation_strings":["Department of Medical and Molecular Biosciences, University of Technology, Sydney, NSW, 2007, Australia","Department of Medical and Molecular Biosciences, University of Technology, Sydney, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical and Molecular Biosciences, University of Technology, Sydney, NSW, 2007, Australia","institution_ids":["https://openalex.org/I114017466"]},{"raw_affiliation_string":"Department of Medical and Molecular Biosciences, University of Technology, Sydney, Australia","institution_ids":["https://openalex.org/I114017466"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029276946","display_name":"Martin F. Polz","orcid":"https://orcid.org/0000-0002-4975-2946"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin F Polz","raw_affiliation_strings":["Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA","Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, USA#TAB#","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055770757","display_name":"Michael R. Gillings","orcid":"https://orcid.org/0000-0002-4043-4351"},"institutions":[{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Michael R Gillings","raw_affiliation_strings":["Department of Biological Sciences, Macquarie University, Sydney, NSW, 2109, Australia","Department of Biological Sciences Macquarie University  Sydney Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Macquarie University, Sydney, NSW, 2109, Australia","institution_ids":["https://openalex.org/I99043593"]},{"raw_affiliation_string":"Department of Biological Sciences Macquarie University  Sydney Australia","institution_ids":["https://openalex.org/I99043593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109425902","display_name":"H. W. Stokes","orcid":null},"institutions":[{"id":"https://openalex.org/I114017466","display_name":"University of Technology Sydney","ror":"https://ror.org/03f0f6041","country_code":"AU","type":"education","lineage":["https://openalex.org/I114017466"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Harold W Stokes","raw_affiliation_strings":["Department of Medical and Molecular Biosciences, University of Technology, Sydney, NSW, 2007, Australia","Department of Medical and Molecular Biosciences, University of Technology, Sydney, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical and Molecular Biosciences, University of Technology, Sydney, NSW, 2007, Australia","institution_ids":["https://openalex.org/I114017466"]},{"raw_affiliation_string":"Department of Medical and Molecular Biosciences, University of Technology, Sydney, Australia","institution_ids":["https://openalex.org/I114017466"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022146125","display_name":"W. Ford Doolittle","orcid":"https://orcid.org/0000-0002-4675-8832"},"institutions":[{"id":"https://openalex.org/I129902397","display_name":"Dalhousie University","ror":"https://ror.org/01e6qks80","country_code":"CA","type":"education","lineage":["https://openalex.org/I129902397"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"W Ford Doolittle","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, NS, B3H 1X5, Canada","Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, NS, B3H 1X5, Canada","institution_ids":["https://openalex.org/I129902397"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Canada","institution_ids":["https://openalex.org/I129902397"]}]},{"author_position":"last","author":{"id":null,"display_name":"Yan Boucher","orcid":null},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yan Boucher","raw_affiliation_strings":["Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA","Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, USA#TAB#","institution_ids":["https://openalex.org/I63966007"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I63966007"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.1626,"has_fulltext":true,"cited_by_count":48,"citation_normalized_percentile":{"value":0.87075134,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"10","issue":"1","first_page":"118","last_page":"118"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.4862000048160553,"subfield":{"id":"https://openalex.org/subfields/1313","display_name":"Molecular Medicine"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.4862000048160553,"subfield":{"id":"https://openalex.org/subfields/1313","display_name":"Molecular Medicine"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10943","display_name":"Escherichia coli research studies","score":0.30489999055862427,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.03629999980330467,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/integron","display_name":"Integron","score":0.9148056507110596},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7047662734985352},{"id":"https://openalex.org/keywords/integrase","display_name":"Integrase","score":0.5225188732147217},{"id":"https://openalex.org/keywords/gene-cassette","display_name":"Gene cassette","score":0.5029627680778503},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4671119451522827},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42214447259902954},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4144169092178345},{"id":"https://openalex.org/keywords/genetic-genealogy","display_name":"Genetic genealogy","score":0.41385766863822937},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3935919404029846},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3749522566795349},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3142819404602051},{"id":"https://openalex.org/keywords/plasmid","display_name":"Plasmid","score":0.08725136518478394},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.08713722229003906}],"concepts":[{"id":"https://openalex.org/C2776650774","wikidata":"https://www.wikidata.org/wiki/Q420197","display_name":"Integron","level":4,"score":0.9148056507110596},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7047662734985352},{"id":"https://openalex.org/C14430832","wikidata":"https://www.wikidata.org/wiki/Q412550","display_name":"Integrase","level":3,"score":0.5225188732147217},{"id":"https://openalex.org/C10147152","wikidata":"https://www.wikidata.org/wiki/Q5413339","display_name":"Gene cassette","level":5,"score":0.5029627680778503},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4671119451522827},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42214447259902954},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4144169092178345},{"id":"https://openalex.org/C75069973","wikidata":"https://www.wikidata.org/wiki/Q913584","display_name":"Genetic genealogy","level":3,"score":0.41385766863822937},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3935919404029846},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3749522566795349},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3142819404602051},{"id":"https://openalex.org/C22744801","wikidata":"https://www.wikidata.org/wiki/Q172778","display_name":"Plasmid","level":3,"score":0.08725136518478394},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.08713722229003906},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D032023","descriptor_name":"Integrons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D032023","descriptor_name":"Integrons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D032023","descriptor_name":"Integrons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-10-118","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-118","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-118","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19383137","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19383137","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:7bf06a59420d47d49ad4ef0257f20f4d","is_oa":true,"landing_page_url":"https://doaj.org/article/7bf06a59420d47d49ad4ef0257f20f4d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 10, Iss 1, p 118 (2009)","raw_type":"article"},{"id":"pmh:oai:opus.lib.uts.edu.au:10453/35926","is_oa":false,"landing_page_url":"http://hdl.handle.net/10453/35926","pdf_url":null,"source":{"id":"https://openalex.org/S4377196279","display_name":"OPUS - Open Publications of UTS Scholars (University of Technology Sydney)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114017466","host_organization_name":"University of Technology Sydney","host_organization_lineage":["https://openalex.org/I114017466"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:opus.lib.uts.edu.au:10453/8816","is_oa":false,"landing_page_url":"http://hdl.handle.net/10453/8816","pdf_url":null,"source":{"id":"https://openalex.org/S4306401357","display_name":"UTS ePRESS (University of Technology Sydney)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114017466","host_organization_name":"University of Technology Sydney","host_organization_lineage":["https://openalex.org/I114017466"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2674596","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2674596","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-118","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-118","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-118","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320591","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2145063082.pdf","grobid_xml":"https://content.openalex.org/works/W2145063082.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1882301353","https://openalex.org/W1999799916","https://openalex.org/W2017592299","https://openalex.org/W2022035303","https://openalex.org/W2024236935","https://openalex.org/W2030941577","https://openalex.org/W2035657017","https://openalex.org/W2037470605","https://openalex.org/W2040438773","https://openalex.org/W2058729834","https://openalex.org/W2060954415","https://openalex.org/W2062791733","https://openalex.org/W2092878024","https://openalex.org/W2114034054","https://openalex.org/W2137641405","https://openalex.org/W2140623825","https://openalex.org/W2146148282","https://openalex.org/W2158119633","https://openalex.org/W2158483908","https://openalex.org/W2158714788","https://openalex.org/W2162825747","https://openalex.org/W4244992722"],"related_works":["https://openalex.org/W1988796642","https://openalex.org/W2794182518","https://openalex.org/W3165030069","https://openalex.org/W4321478461","https://openalex.org/W2370061486","https://openalex.org/W4390581261","https://openalex.org/W2356055424","https://openalex.org/W2394052157","https://openalex.org/W4317398991","https://openalex.org/W1967190780"],"abstract_inverted_index":{"BACKGROUND:":[0],"Although":[1],"integrons":[2,109,169],"and":[3,14,34,66,96,106,110,119,130,148,170],"their":[4,111,145],"associated":[5],"gene":[6,53,113],"cassettes":[7],"are":[8,26],"present":[9],"in":[10,23,36,45,136,177],"~10%":[11],"of":[12,20,62,67,108,117,128,139,168,199],"bacteria":[13],"can":[15,122,133,142,191],"represent":[16],"up":[17],"to":[18,47,77,101,166,174,186,194],"3%":[19],"the":[21,60,68,94,103,131,154],"genome":[22],"which":[24,190],"they":[25],"found,":[27],"very":[28],"few":[29],"have":[30,42],"been":[31,43],"properly":[32],"identified":[33],"annotated":[35],"public":[37],"databases.":[38],"These":[39],"genetic":[40,89,201],"elements":[41],"overlooked":[44],"comparison":[46],"other":[48],"vectors":[49],"that":[50],"facilitate":[51],"lateral":[52],"transfer":[54],"between":[55],"microorganisms.":[56],"DESCRIPTION:":[57],"By":[58],"automating":[59],"identification":[61],"integron":[63,120],"integrase":[64],"genes":[65],"non-coding":[69],"cassette-associated":[70],"attC":[71],"recombination":[72],"sites,":[73],"we":[74],"were":[75],"able":[76],"assemble":[78],"a":[79,126,137,160,184,195],"database":[80,95],"containing":[81],"all":[82],"publicly":[83],"available":[84,173],"sequence":[85,179],"information":[86,98],"regarding":[87],"these":[88],"elements.":[90],"Specialists":[91],"manually":[92],"curated":[93],"this":[97,200],"was":[99],"used":[100],"improve":[102],"automated":[104],"detection":[105],"annotation":[107],"encoded":[112],"cassettes.":[114],"ACID":[115,152,158,181],"(annotation":[116],"cassette":[118],"data)":[121],"be":[123,134],"searched":[124],"using":[125,153],"range":[127],"queries":[129],"data":[132,147],"downloaded":[135],"number":[138],"formats.":[140],"Users":[141],"readily":[143],"annotate":[144],"own":[146],"integrate":[149],"it":[150],"into":[151],"tools":[155,172],"provided.":[156],"CONCLUSION:":[157],"is":[159],"community":[161],"resource":[162],"providing":[163],"easy":[164],"access":[165],"annotations":[167],"making":[171],"detect":[175],"them":[176],"novel":[178],"data.":[180],"also":[182],"hosts":[183],"forum":[185],"prompt":[187],"integron-related":[188],"discussion,":[189],"hopefully":[192],"lead":[193],"more":[196],"universal":[197],"definition":[198],"element.":[202]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
