{"id":"https://openalex.org/W4415647105","doi":"https://doi.org/10.1177/15578666251388496","title":"Reflections on the Presence of Human Cancer Genes in Primate Genomes","display_name":"Reflections on the Presence of Human Cancer Genes in Primate Genomes","publication_year":2025,"publication_date":"2025-10-29","ids":{"openalex":"https://openalex.org/W4415647105","doi":"https://doi.org/10.1177/15578666251388496","pmid":"https://pubmed.ncbi.nlm.nih.gov/41157839"},"language":"en","primary_location":{"id":"doi:10.1177/15578666251388496","is_oa":true,"landing_page_url":"https://doi.org/10.1177/15578666251388496","pdf_url":"https://www.liebertpub.com/doi/pdf/10.1177/15578666251388496?download=true","source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443"],"host_organization_lineage_names":["Mary Ann Liebert, Inc."],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://www.liebertpub.com/doi/pdf/10.1177/15578666251388496?download=true","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101944225","display_name":"Xiao Liang","orcid":"https://orcid.org/0000-0001-8789-6732"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]},{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiao Liang","raw_affiliation_strings":["Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, Virginia, USA","Department of Pathology and Cell Biology, Columbia University, New York, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, Virginia, USA","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Department of Pathology and Cell Biology, Columbia University, New York, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057291575","display_name":"Lenwood S. Heath","orcid":"https://orcid.org/0000-0003-1608-431X"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lenwood S. Heath","raw_affiliation_strings":["Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, Virginia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, Virginia, USA","institution_ids":["https://openalex.org/I859038795"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.0955,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.82270731,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"33","issue":"2","first_page":"219","last_page":"235"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.21279999613761902,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.21279999613761902,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.1468999981880188,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.060600001364946365,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/primate","display_name":"Primate","score":0.8797000050544739},{"id":"https://openalex.org/keywords/clade","display_name":"Clade","score":0.704200029373169},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.660099983215332},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5630999803543091},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.5200999975204468},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5024999976158142},{"id":"https://openalex.org/keywords/nonhuman-primate","display_name":"Nonhuman primate","score":0.4465000033378601}],"concepts":[{"id":"https://openalex.org/C2780509455","wikidata":"https://www.wikidata.org/wiki/Q7380","display_name":"Primate","level":2,"score":0.8797000050544739},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8111000061035156},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.704200029373169},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.660099983215332},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5630999803543091},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.5576000213623047},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.5200999975204468},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5024999976158142},{"id":"https://openalex.org/C3018809729","wikidata":"https://www.wikidata.org/wiki/Q7380","display_name":"Nonhuman primate","level":2,"score":0.4465000033378601},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4268999993801117},{"id":"https://openalex.org/C3020794687","wikidata":"https://www.wikidata.org/wiki/Q7380","display_name":"Non human primate","level":2,"score":0.3928999900817871},{"id":"https://openalex.org/C2910145492","wikidata":"https://www.wikidata.org/wiki/Q1061088","display_name":"African Green Monkey","level":3,"score":0.38339999318122864},{"id":"https://openalex.org/C2776838516","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.33719998598098755},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.32019999623298645},{"id":"https://openalex.org/C47042493","wikidata":"https://www.wikidata.org/wiki/Q265799","display_name":"Human genetics","level":3,"score":0.3037000000476837},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2863999903202057},{"id":"https://openalex.org/C2779987252","wikidata":"https://www.wikidata.org/wiki/Q635162","display_name":"Hominidae","level":3,"score":0.26910001039505005},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.26579999923706055}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009857","descriptor_name":"Oncogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009857","descriptor_name":"Oncogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011323","descriptor_name":"Primates","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011323","descriptor_name":"Primates","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D052138","descriptor_name":"Genes, Neoplasm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D052138","descriptor_name":"Genes, Neoplasm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1177/15578666251388496","is_oa":true,"landing_page_url":"https://doi.org/10.1177/15578666251388496","pdf_url":"https://www.liebertpub.com/doi/pdf/10.1177/15578666251388496?download=true","source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443"],"host_organization_lineage_names":["Mary Ann Liebert, Inc."],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},{"id":"pmid:41157839","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41157839","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computational biology : a journal of computational molecular cell biology","raw_type":null}],"best_oa_location":{"id":"doi:10.1177/15578666251388496","is_oa":true,"landing_page_url":"https://doi.org/10.1177/15578666251388496","pdf_url":"https://www.liebertpub.com/doi/pdf/10.1177/15578666251388496?download=true","source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443"],"host_organization_lineage_names":["Mary Ann Liebert, Inc."],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4415647105.pdf","grobid_xml":"https://content.openalex.org/works/W4415647105.grobid-xml"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W1533807405","https://openalex.org/W1849979647","https://openalex.org/W1969192247","https://openalex.org/W1991154912","https://openalex.org/W2011014042","https://openalex.org/W2019017190","https://openalex.org/W2019841176","https://openalex.org/W2036196513","https://openalex.org/W2051418786","https://openalex.org/W2055043387","https://openalex.org/W2059223767","https://openalex.org/W2059805279","https://openalex.org/W2066053649","https://openalex.org/W2080125599","https://openalex.org/W2083922582","https://openalex.org/W2098683718","https://openalex.org/W2102066159","https://openalex.org/W2111999181","https://openalex.org/W2114175948","https://openalex.org/W2132283613","https://openalex.org/W2146712157","https://openalex.org/W2162795003","https://openalex.org/W2164194749","https://openalex.org/W2167284803","https://openalex.org/W2265081832","https://openalex.org/W2288809716","https://openalex.org/W2303408208","https://openalex.org/W2325363292","https://openalex.org/W2414526721","https://openalex.org/W2479687413","https://openalex.org/W2522792278","https://openalex.org/W2551729923","https://openalex.org/W2593885611","https://openalex.org/W2608890285","https://openalex.org/W2803273274","https://openalex.org/W2804313531","https://openalex.org/W2886041381","https://openalex.org/W2894573839","https://openalex.org/W2947552847","https://openalex.org/W2949492942","https://openalex.org/W2949549557","https://openalex.org/W2953478896","https://openalex.org/W2985743068","https://openalex.org/W2992116573","https://openalex.org/W3007397157","https://openalex.org/W3010381651","https://openalex.org/W3014506894","https://openalex.org/W3047825284","https://openalex.org/W3048090444","https://openalex.org/W3110528877","https://openalex.org/W3117377527","https://openalex.org/W3137321937","https://openalex.org/W3161211885","https://openalex.org/W3161516523","https://openalex.org/W4200135473","https://openalex.org/W4289274885","https://openalex.org/W4290075586","https://openalex.org/W4307501845","https://openalex.org/W4309506674","https://openalex.org/W4311577030","https://openalex.org/W4378976294","https://openalex.org/W4378976943","https://openalex.org/W4378977815","https://openalex.org/W4380577397","https://openalex.org/W4386705143","https://openalex.org/W4391277183"],"related_works":[],"abstract_inverted_index":{"Cancer":[0],"genes,":[1,7],"including":[2],"oncogenes":[3],"and":[4,35,45,76],"tumor":[5],"suppressor":[6],"are":[8,52,159],"crucial":[9],"subjects":[10],"of":[11,66,87,96,132],"study":[12],"in":[13,18,136,143,146,156],"human":[14,32,68,90,110],"health.":[15],"With":[16],"advancements":[17],"nonhuman":[19,46,73],"primate":[20,37,47,59,74,105,120,126],"genome":[21],"research,":[22],"recent":[23,141],"investigations":[24],"have":[25,102],"started":[26],"to":[27,55,101],"explore":[28],"the":[29,64,130,154],"relationship":[30],"between":[31,42],"cancer":[33,43,69,97,134],"genes":[34,44,70,98,135],"various":[36],"species,":[38,79],"implying":[39],"possible":[40],"links":[41],"species.":[48,60],"However,":[49],"these":[50],"findings":[51],"commonly":[53],"limited":[54],"only":[56],"a":[57,83,93,137],"few":[58],"Here,":[61],"we":[62],"investigate":[63],"distribution":[65],"726":[67],"across":[71],"31":[72],"species":[75],"4":[77],"nonprimate":[78],"comparing":[80],"them":[81],"with":[82,108],"randomly":[84],"selected":[85],"set":[86],"339":[88],"other":[89,144],"genes.":[91],"Overall,":[92],"higher":[94],"ratio":[95],"was":[99],"found":[100],"emerged":[103],"before":[104],"speciation":[106],"compared":[107],"random":[109],"genes;":[111],"however,":[112],"this":[113],"trend":[114],"did":[115],"not":[116],"necessarily":[117],"continue":[118],"after":[119],"speciation.":[121],"Furthermore,":[122],"our":[123],"investigation":[124],"into":[125],"clades":[127,145,155],"suggests":[128],"that":[129],"absence":[131],"certain":[133],"clade":[138],"may":[139],"reflect":[140],"emergence":[142],"which":[147,157],"they":[148,158],"exist,":[149],"rather":[150],"than":[151],"elimination":[152],"within":[153],"absent.":[160]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-06-14T06:11:07.267592","created_date":"2025-10-29T00:00:00"}
