{"id":"https://openalex.org/W4416702544","doi":"https://doi.org/10.1177/15578666251370765","title":"Counting RNA Loop Interaction Networks of Homology Group Rank Zero","display_name":"Counting RNA Loop Interaction Networks of Homology Group Rank Zero","publication_year":2025,"publication_date":"2025-11-26","ids":{"openalex":"https://openalex.org/W4416702544","doi":"https://doi.org/10.1177/15578666251370765","pmid":"https://pubmed.ncbi.nlm.nih.gov/41295974"},"language":"en","primary_location":{"id":"doi:10.1177/15578666251370765","is_oa":false,"landing_page_url":"https://doi.org/10.1177/15578666251370765","pdf_url":null,"source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443"],"host_organization_lineage_names":["Mary Ann Liebert, Inc."],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027956988","display_name":"Zi-Wei Bai","orcid":null},"institutions":[{"id":"https://openalex.org/I16365422","display_name":"Hefei University of Technology","ror":"https://ror.org/02czkny70","country_code":"CN","type":"education","lineage":["https://openalex.org/I16365422"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zi-Wei Bai","raw_affiliation_strings":["School of Mathematics, Hefei University of Technology, Hefei, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics, Hefei University of Technology, Hefei, PR China","institution_ids":["https://openalex.org/I16365422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017252328","display_name":"Ricky X. F. Chen","orcid":"https://orcid.org/0000-0003-1061-3049"},"institutions":[{"id":"https://openalex.org/I16365422","display_name":"Hefei University of Technology","ror":"https://ror.org/02czkny70","country_code":"CN","type":"education","lineage":["https://openalex.org/I16365422"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ricky X.F. Chen","raw_affiliation_strings":["School of Mathematics, Hefei University of Technology, Hefei, PR China"],"raw_orcid":"https://orcid.org/0000-0003-1061-3049","affiliations":[{"raw_affiliation_string":"School of Mathematics, Hefei University of Technology, Hefei, PR China","institution_ids":["https://openalex.org/I16365422"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000390095","display_name":"Michael Fuchs","orcid":"https://orcid.org/0000-0001-8891-6897"},"institutions":[{"id":"https://openalex.org/I87354575","display_name":"National Chengchi University","ror":"https://ror.org/03rqk8h36","country_code":"TW","type":"education","lineage":["https://openalex.org/I87354575"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Michael Fuchs","raw_affiliation_strings":["Department of Mathematical Sciences, National Chengchi University, Taipei, Taiwan"],"raw_orcid":"https://orcid.org/0000-0001-8891-6897","affiliations":[{"raw_affiliation_string":"Department of Mathematical Sciences, National Chengchi University, Taipei, Taiwan","institution_ids":["https://openalex.org/I87354575"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5017252328"],"corresponding_institution_ids":["https://openalex.org/I16365422"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.42365022,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"32","issue":"12","first_page":"1147","last_page":"1159"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11476","display_name":"Graph theory and applications","score":0.3125,"subfield":{"id":"https://openalex.org/subfields/2608","display_name":"Geometry and Topology"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11476","display_name":"Graph theory and applications","score":0.3125,"subfield":{"id":"https://openalex.org/subfields/2608","display_name":"Geometry and Topology"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.13410000503063202,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.061000000685453415,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.6272000074386597},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.5530999898910522},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.5213000178337097},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.46070000529289246},{"id":"https://openalex.org/keywords/loop","display_name":"Loop (graph theory)","score":0.42750000953674316},{"id":"https://openalex.org/keywords/counting-problem","display_name":"Counting problem","score":0.4059000015258789},{"id":"https://openalex.org/keywords/base-pair","display_name":"Base pair","score":0.39660000801086426}],"concepts":[{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.7572000026702881},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.6577000021934509},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.6272000074386597},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.5530999898910522},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.5213000178337097},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.46070000529289246},{"id":"https://openalex.org/C184670325","wikidata":"https://www.wikidata.org/wiki/Q512604","display_name":"Loop (graph theory)","level":2,"score":0.42750000953674316},{"id":"https://openalex.org/C16592021","wikidata":"https://www.wikidata.org/wiki/Q5177154","display_name":"Counting problem","level":2,"score":0.4059000015258789},{"id":"https://openalex.org/C185581394","wikidata":"https://www.wikidata.org/wiki/Q145911","display_name":"Base pair","level":3,"score":0.39660000801086426},{"id":"https://openalex.org/C2780813799","wikidata":"https://www.wikidata.org/wiki/Q3274237","display_name":"Zero (linguistics)","level":2,"score":0.3799999952316284},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.36320000886917114},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.3571000099182129},{"id":"https://openalex.org/C2781311116","wikidata":"https://www.wikidata.org/wiki/Q83306","display_name":"Group (periodic table)","level":2,"score":0.35100001096725464},{"id":"https://openalex.org/C42058472","wikidata":"https://www.wikidata.org/wiki/Q810214","display_name":"Base (topology)","level":2,"score":0.3504999876022339},{"id":"https://openalex.org/C55537702","wikidata":"https://www.wikidata.org/wiki/Q3139849","display_name":"Cellular homology","level":3,"score":0.290800005197525},{"id":"https://openalex.org/C77021192","wikidata":"https://www.wikidata.org/wiki/Q431078","display_name":"Free group","level":3,"score":0.2809000015258789},{"id":"https://openalex.org/C81651864","wikidata":"https://www.wikidata.org/wiki/Q874429","display_name":"Group theory","level":2,"score":0.2574999928474426},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.2524000108242035}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020029","descriptor_name":"Base Pairing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020029","descriptor_name":"Base Pairing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1177/15578666251370765","is_oa":false,"landing_page_url":"https://doi.org/10.1177/15578666251370765","pdf_url":null,"source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443"],"host_organization_lineage_names":["Mary Ann Liebert, Inc."],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},{"id":"pmid:41295974","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41295974","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computational biology : a journal of computational molecular cell biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4969054711","display_name":null,"funder_award_id":"No. 2208085MA02","funder_id":"https://openalex.org/F4320334897","funder_display_name":"Natural Science Foundation of Anhui Province"}],"funders":[{"id":"https://openalex.org/F4320334897","display_name":"Natural Science Foundation of Anhui Province","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W59496804","https://openalex.org/W1954434250","https://openalex.org/W1983134569","https://openalex.org/W2003004847","https://openalex.org/W2018547553","https://openalex.org/W2025746238","https://openalex.org/W2028732503","https://openalex.org/W2031889252","https://openalex.org/W2059090778","https://openalex.org/W2070327606","https://openalex.org/W2072203611","https://openalex.org/W2126244322","https://openalex.org/W2144584558","https://openalex.org/W2406723504","https://openalex.org/W2790566782","https://openalex.org/W3000466217","https://openalex.org/W3138771084","https://openalex.org/W4252334863","https://openalex.org/W4293238246","https://openalex.org/W4320485804"],"related_works":[],"abstract_inverted_index":{"An":[0],"enumerative":[1,99],"study":[2],"of":[3,14,35,42,112,118,122,140,143,149],"RNA":[4,20],"secondary":[5,21,43,150],"structures":[6,44,151],"according":[7],"to":[8,83,89,127],"various":[9,29],"characteristics":[10],"is":[11,125,152],"a":[12,54,91,109],"topic":[13],"key":[15],"importance":[16],"in":[17,28,146],"computational":[18],"biology.":[19],"structure":[22,60,120],"pairs":[23,41,107,121,145,148],"have":[24,45],"also":[25,135],"been":[26,46,87],"studied":[27,47],"contexts.":[30],"Recently,":[31],"the":[32,36,64,138,141],"homology":[33,65],"groups":[34],"simplicial":[37],"complices":[38],"induced":[39],"by":[40,48],"Bura,":[49],"He,":[50],"and":[51,103],"Reidys,":[52],"providing":[53],"new":[55],"way":[56],"for":[57,105],"characterizing":[58],"these":[59,119],"pairs.":[61],"In":[62,94],"particular,":[63],"group":[66,111],"<mml:math":[67],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[68],"display=\"inline\"":[69],"overflow=\"scroll\">":[70],"<mml:mrow>":[71,72,74],"<mml:msub>":[73],"<mml:mi>H</mml:mi>":[75],"</mml:mrow>":[76,79,80],"<mml:mn>2</mml:mn>":[77],"</mml:msub>":[78],"</mml:math>":[81],"corresponding":[82],"any":[84],"pair":[85],"has":[86],"shown":[88,126],"be":[90,128],"open-access":[92,110],"group.":[93],"this":[95],"article,":[96],"we":[97],"provide":[98],"results,":[100],"both":[101],"exactly":[102],"asymptotically,":[104],"those":[106,147],"giving":[108],"rank":[113],"zero.":[114],"The":[115],"asymptotic":[116],"number":[117,142],"length":[123],"n":[124,130,131],"(0.2774624151\u2026)(4.8105752536\u2026)":[129],"\u22123/2":[132],".":[133],"We":[134],"prove":[136],"that":[137],"distribution":[139],"base":[144],"asymptotically":[153],"normal.":[154]},"counts_by_year":[],"updated_date":"2026-06-14T06:11:07.267592","created_date":"2025-11-27T00:00:00"}
