{"id":"https://openalex.org/W4380877775","doi":"https://doi.org/10.1177/14738716231181545","title":"An investigation into various visualization tools for complex biological networks","display_name":"An investigation into various visualization tools for complex biological networks","publication_year":2023,"publication_date":"2023-06-15","ids":{"openalex":"https://openalex.org/W4380877775","doi":"https://doi.org/10.1177/14738716231181545"},"language":"en","primary_location":{"id":"doi:10.1177/14738716231181545","is_oa":true,"landing_page_url":"https://doi.org/10.1177/14738716231181545","pdf_url":"https://journals.sagepub.com/doi/pdf/10.1177/14738716231181545","source":{"id":"https://openalex.org/S55152591","display_name":"Information Visualization","issn_l":"1473-8716","issn":["1473-8716","1473-8724"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Information Visualization","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://journals.sagepub.com/doi/pdf/10.1177/14738716231181545","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5092182571","display_name":"Hanin Alzahrani","orcid":"https://orcid.org/0000-0001-6468-4200"},"institutions":[{"id":"https://openalex.org/I52207611","display_name":"Al Baha University","ror":"https://ror.org/0403jak37","country_code":"SA","type":"education","lineage":["https://openalex.org/I52207611"]},{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB","SA"],"is_corresponding":true,"raw_author_name":"Hanin Alzahrani","raw_affiliation_strings":["Faculty of Computer Science and Information Technology, Albaha University, Al Bahah, Saudi Arabia","School of Computing, Newcastle University, Newcastle-upon Tyne, UK"],"raw_orcid":"https://orcid.org/0000-0001-6468-4200","affiliations":[{"raw_affiliation_string":"Faculty of Computer Science and Information Technology, Albaha University, Al Bahah, Saudi Arabia","institution_ids":["https://openalex.org/I52207611"]},{"raw_affiliation_string":"School of Computing, Newcastle University, Newcastle-upon Tyne, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005188502","display_name":"Sara Johansson Fernstad","orcid":"https://orcid.org/0000-0003-4518-5144"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sara Fernstad","raw_affiliation_strings":["School of Computing, Newcastle University, Newcastle-upon Tyne, UK"],"raw_orcid":"https://orcid.org/0000-0003-4518-5144","affiliations":[{"raw_affiliation_string":"School of Computing, Newcastle University, Newcastle-upon Tyne, UK","institution_ids":["https://openalex.org/I84884186"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5092182571"],"corresponding_institution_ids":["https://openalex.org/I52207611","https://openalex.org/I84884186"],"apc_list":null,"apc_paid":null,"fwci":0.315,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.52465974,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"22","issue":"4","first_page":"323","last_page":"339"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9825000166893005,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8526806235313416},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.8306257724761963},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.6443363428115845},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.6282256841659546},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5695627331733704},{"id":"https://openalex.org/keywords/graph-drawing","display_name":"Graph drawing","score":0.5523062348365784},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.5315036177635193},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.48873281478881836},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.47207188606262207},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.46669724583625793},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.45366954803466797},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.45093122124671936},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.4481033682823181},{"id":"https://openalex.org/keywords/information-visualization","display_name":"Information visualization","score":0.4340882897377014},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2737928032875061},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.19024035334587097},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1424807906150818}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8526806235313416},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.8306257724761963},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.6443363428115845},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.6282256841659546},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5695627331733704},{"id":"https://openalex.org/C112953755","wikidata":"https://www.wikidata.org/wiki/Q739462","display_name":"Graph drawing","level":3,"score":0.5523062348365784},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.5315036177635193},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.48873281478881836},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.47207188606262207},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.46669724583625793},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.45366954803466797},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.45093122124671936},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.4481033682823181},{"id":"https://openalex.org/C185578843","wikidata":"https://www.wikidata.org/wiki/Q10609775","display_name":"Information visualization","level":3,"score":0.4340882897377014},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2737928032875061},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.19024035334587097},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1424807906150818},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1177/14738716231181545","is_oa":true,"landing_page_url":"https://doi.org/10.1177/14738716231181545","pdf_url":"https://journals.sagepub.com/doi/pdf/10.1177/14738716231181545","source":{"id":"https://openalex.org/S55152591","display_name":"Information Visualization","issn_l":"1473-8716","issn":["1473-8716","1473-8724"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Information Visualization","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1177/14738716231181545","is_oa":true,"landing_page_url":"https://doi.org/10.1177/14738716231181545","pdf_url":"https://journals.sagepub.com/doi/pdf/10.1177/14738716231181545","source":{"id":"https://openalex.org/S55152591","display_name":"Information Visualization","issn_l":"1473-8716","issn":["1473-8716","1473-8724"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Information Visualization","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4380877775.pdf"},"referenced_works_count":99,"referenced_works":["https://openalex.org/W884650706","https://openalex.org/W1270834676","https://openalex.org/W1877439477","https://openalex.org/W1889881724","https://openalex.org/W2001485175","https://openalex.org/W2033527355","https://openalex.org/W2042693705","https://openalex.org/W2047647552","https://openalex.org/W2064600524","https://openalex.org/W2069457006","https://openalex.org/W2076684951","https://openalex.org/W2079420557","https://openalex.org/W2093830129","https://openalex.org/W2097248014","https://openalex.org/W2106474670","https://openalex.org/W2122786045","https://openalex.org/W2125910575","https://openalex.org/W2126175129","https://openalex.org/W2128787428","https://openalex.org/W2137531873","https://openalex.org/W2138793275","https://openalex.org/W2139483589","https://openalex.org/W2140635350","https://openalex.org/W2149194035","https://openalex.org/W2149203488","https://openalex.org/W2156716434","https://openalex.org/W2159675211","https://openalex.org/W2284390251","https://openalex.org/W2312399333","https://openalex.org/W2338962856","https://openalex.org/W2402800554","https://openalex.org/W2470757901","https://openalex.org/W2477514072","https://openalex.org/W2487200295","https://openalex.org/W2499499103","https://openalex.org/W2508555779","https://openalex.org/W2528222240","https://openalex.org/W2548753368","https://openalex.org/W2566463892","https://openalex.org/W2580286656","https://openalex.org/W2582372140","https://openalex.org/W2610221865","https://openalex.org/W2617411854","https://openalex.org/W2724371674","https://openalex.org/W2734881787","https://openalex.org/W2736887218","https://openalex.org/W2751436602","https://openalex.org/W2807368077","https://openalex.org/W2891614933","https://openalex.org/W2893162497","https://openalex.org/W2903735556","https://openalex.org/W2904982986","https://openalex.org/W2914741009","https://openalex.org/W2916136405","https://openalex.org/W2921378891","https://openalex.org/W2945866571","https://openalex.org/W2951271819","https://openalex.org/W2952541405","https://openalex.org/W2977707586","https://openalex.org/W2982511821","https://openalex.org/W2993853848","https://openalex.org/W3000115878","https://openalex.org/W3017239908","https://openalex.org/W3029785311","https://openalex.org/W3037198595","https://openalex.org/W3044917564","https://openalex.org/W3081115535","https://openalex.org/W3081454325","https://openalex.org/W3096926197","https://openalex.org/W3101369110","https://openalex.org/W3103657871","https://openalex.org/W3105440653","https://openalex.org/W3107015632","https://openalex.org/W3126033509","https://openalex.org/W3131975258","https://openalex.org/W3154755494","https://openalex.org/W3160923728","https://openalex.org/W3164766680","https://openalex.org/W3176912714","https://openalex.org/W3194795934","https://openalex.org/W3199491582","https://openalex.org/W3216323234","https://openalex.org/W4200375399","https://openalex.org/W4206275846","https://openalex.org/W4210459667","https://openalex.org/W4214737726","https://openalex.org/W4225918123","https://openalex.org/W4229028232","https://openalex.org/W4229688471","https://openalex.org/W4230237497","https://openalex.org/W4232198685","https://openalex.org/W4282932765","https://openalex.org/W4282939468","https://openalex.org/W4283399601","https://openalex.org/W4284894508","https://openalex.org/W4287510214","https://openalex.org/W4297677400","https://openalex.org/W4362474217","https://openalex.org/W4388380216"],"related_works":["https://openalex.org/W2155492529","https://openalex.org/W4252504573","https://openalex.org/W2141346699","https://openalex.org/W4385510321","https://openalex.org/W2101315668","https://openalex.org/W2171298469","https://openalex.org/W4214598766","https://openalex.org/W2082199132","https://openalex.org/W2098027521","https://openalex.org/W1561795279"],"abstract_inverted_index":{"Network":[0],"biology":[1],"has":[2],"become":[3],"crucial":[4],"to":[5,20,36,58,71],"understanding":[6],"the":[7,22,82,95,107,130,144,150],"complex":[8,85],"structural":[9],"characteristics":[10],"of":[11,24,49,68,84,149],"biological":[12,41,86],"systems.":[13],"Consequently,":[14],"advanced":[15,120],"visualization":[16,30,63,83],"approaches":[17],"are":[18,67],"needed":[19],"support":[21,46],"investigation":[23],"such":[25,115,134],"structures,":[26],"and":[27,51,77,104,112,127,140],"several":[28],"network":[29],"tools":[31,45],"have":[32],"subsequently":[33],"been":[34],"developed":[35],"help":[37],"researchers":[38],"analyze":[39],"intricate":[40],"networks.":[42],"While":[43],"these":[44],"a":[47,59,89],"range":[48],"analytical":[50,111],"interactive":[52,113],"features,":[53],"it":[54],"is":[55],"sometimes":[56],"unclear":[57],"data":[60],"analyst":[61],"or":[62],"designer":[64],"which":[65],"features":[66],"most":[69],"relevance":[70],"biologists.":[72],"Thus,":[73],"this":[74],"study":[75],"investigates":[76],"identifies":[78],"essential":[79,97],"factors":[80,98,153,162],"for":[81],"networks":[87],"using":[88],"mixed":[90],"methodology":[91],"approach.":[92],"Based":[93],"on":[94],"findings,":[96],"were":[99,155,165],"categorized":[100],"as":[101,116,135],"either":[102],"generic":[103,152],"heuristic,":[105],"where":[106],"former":[108],"concern":[109,132],"different":[110],"functionalities,":[114],"an":[117],"efficient":[118],"layout,":[119],"search":[121],"capabilities,":[122],"plugin":[123],"availability,":[124],"graph":[125],"analysis":[126],"user-friendliness,":[128],"while":[129,158],"latter":[131],"usability,":[133],"information":[136],"coding,":[137],"flexibility,":[138],"orientation":[139],"help.":[141],"1":[142],"Furthermore,":[143],"findings":[145],"indicate":[146],"that":[147],"12":[148],"15":[151],"identified":[154,163],"moderately":[156,166],"important,":[157],"all":[159],"10":[160],"heuristic":[161],"herein":[164],"important.":[167]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2025-10-10T00:00:00"}
