{"id":"https://openalex.org/W2520170001","doi":"https://doi.org/10.1177/1473871616666394","title":"Graph query algebra and visual proximity rules for biological pathway exploration","display_name":"Graph query algebra and visual proximity rules for biological pathway exploration","publication_year":2016,"publication_date":"2016-09-12","ids":{"openalex":"https://openalex.org/W2520170001","doi":"https://doi.org/10.1177/1473871616666394","mag":"2520170001"},"language":"en","primary_location":{"id":"doi:10.1177/1473871616666394","is_oa":false,"landing_page_url":"https://doi.org/10.1177/1473871616666394","pdf_url":null,"source":{"id":"https://openalex.org/S55152591","display_name":"Information Visualization","issn_l":"1473-8716","issn":["1473-8716","1473-8724"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Information Visualization","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100994577","display_name":"Keqin Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I79272384","display_name":"University of Maryland, Baltimore County","ror":"https://ror.org/02qskvh78","country_code":"US","type":"education","lineage":["https://openalex.org/I79272384"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Keqin Wu","raw_affiliation_strings":["Department of Computer Science and Electrical Engineering, University of Maryland, Baltimore County, Baltimore, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Electrical Engineering, University of Maryland, Baltimore County, Baltimore, MD, USA","institution_ids":["https://openalex.org/I79272384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101475441","display_name":"Liang Sun","orcid":"https://orcid.org/0000-0003-1634-4716"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liang Sun","raw_affiliation_strings":["Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004246605","display_name":"Carl J. Schmidt","orcid":"https://orcid.org/0000-0002-8386-4781"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carl Schmidt","raw_affiliation_strings":["Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101617962","display_name":"Jian Chen","orcid":"https://orcid.org/0000-0001-7542-1131"},"institutions":[{"id":"https://openalex.org/I79272384","display_name":"University of Maryland, Baltimore County","ror":"https://ror.org/02qskvh78","country_code":"US","type":"education","lineage":["https://openalex.org/I79272384"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jian Chen","raw_affiliation_strings":["Department of Computer Science and Electrical Engineering, University of Maryland, Baltimore County, Baltimore, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Electrical Engineering, University of Maryland, Baltimore County, Baltimore, MD, USA","institution_ids":["https://openalex.org/I79272384"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5101617962"],"corresponding_institution_ids":["https://openalex.org/I79272384"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.08844501,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"16","issue":"3","first_page":"217","last_page":"231"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8307521343231201},{"id":"https://openalex.org/keywords/query-language","display_name":"Query language","score":0.6224855184555054},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5543137788772583},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.523811936378479},{"id":"https://openalex.org/keywords/query-optimization","display_name":"Query optimization","score":0.5230175852775574},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5117828249931335},{"id":"https://openalex.org/keywords/query-expansion","display_name":"Query expansion","score":0.5020549297332764},{"id":"https://openalex.org/keywords/web-search-query","display_name":"Web search query","score":0.48310089111328125},{"id":"https://openalex.org/keywords/web-query-classification","display_name":"Web query classification","score":0.4576427638530731},{"id":"https://openalex.org/keywords/sargable","display_name":"Sargable","score":0.4116886556148529},{"id":"https://openalex.org/keywords/graph-database","display_name":"Graph database","score":0.4104936420917511},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.11186385154724121}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8307521343231201},{"id":"https://openalex.org/C192028432","wikidata":"https://www.wikidata.org/wiki/Q845739","display_name":"Query language","level":2,"score":0.6224855184555054},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5543137788772583},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.523811936378479},{"id":"https://openalex.org/C157692150","wikidata":"https://www.wikidata.org/wiki/Q2919848","display_name":"Query optimization","level":2,"score":0.5230175852775574},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5117828249931335},{"id":"https://openalex.org/C99016210","wikidata":"https://www.wikidata.org/wiki/Q5488129","display_name":"Query expansion","level":2,"score":0.5020549297332764},{"id":"https://openalex.org/C164120249","wikidata":"https://www.wikidata.org/wiki/Q995982","display_name":"Web search query","level":3,"score":0.48310089111328125},{"id":"https://openalex.org/C118689300","wikidata":"https://www.wikidata.org/wiki/Q7978614","display_name":"Web query classification","level":4,"score":0.4576427638530731},{"id":"https://openalex.org/C192939062","wikidata":"https://www.wikidata.org/wiki/Q104840822","display_name":"Sargable","level":4,"score":0.4116886556148529},{"id":"https://openalex.org/C176225458","wikidata":"https://www.wikidata.org/wiki/Q595971","display_name":"Graph database","level":3,"score":0.4104936420917511},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.11186385154724121}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1177/1473871616666394","is_oa":false,"landing_page_url":"https://doi.org/10.1177/1473871616666394","pdf_url":null,"source":{"id":"https://openalex.org/S55152591","display_name":"Information Visualization","issn_l":"1473-8716","issn":["1473-8716","1473-8724"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Information Visualization","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3933234838","display_name":null,"funder_award_id":"1147216","funder_id":"https://openalex.org/F4320332179","funder_display_name":"Office of the Director"}],"funders":[{"id":"https://openalex.org/F4320332179","display_name":"Office of the Director","ror":"https://ror.org/04nseet23"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W127679098","https://openalex.org/W137863291","https://openalex.org/W1697858014","https://openalex.org/W1903430549","https://openalex.org/W1926682734","https://openalex.org/W1998767819","https://openalex.org/W1999983354","https://openalex.org/W2023098599","https://openalex.org/W2025806111","https://openalex.org/W2028133290","https://openalex.org/W2035846044","https://openalex.org/W2062941476","https://openalex.org/W2071353749","https://openalex.org/W2075027317","https://openalex.org/W2093857381","https://openalex.org/W2096883695","https://openalex.org/W2099305423","https://openalex.org/W2104297794","https://openalex.org/W2135482287","https://openalex.org/W2145640629","https://openalex.org/W2148544545","https://openalex.org/W2158453355","https://openalex.org/W2166365305","https://openalex.org/W4231813008","https://openalex.org/W4251284059"],"related_works":["https://openalex.org/W2096359267","https://openalex.org/W2572349046","https://openalex.org/W2026738364","https://openalex.org/W2146885082","https://openalex.org/W1981131819","https://openalex.org/W2392799717","https://openalex.org/W3125756434","https://openalex.org/W2124814993","https://openalex.org/W2017989738","https://openalex.org/W2186703450"],"abstract_inverted_index":{"We":[0],"present":[1],"the":[2,56,76,97],"design":[3],"and":[4,13,95,107,114],"validation":[5],"of":[6,82],"an":[7],"example-based":[8],"pathway":[9,22,26,52,62,103,117],"graph":[10,27,104],"query":[11,28,93,98,105],"algebra":[12,29,106],"visual":[14,65,108],"proximity":[15,66,70,109],"rules":[16,67,110],"to":[17,37,71],"address":[18],"challenging":[19],"large":[20],"biological":[21],"exploration":[23,77],"tasks.":[24],"Our":[25],"interprets":[30],"relationship":[31,57],"queries":[32],"given":[33],"by":[34],"selected":[35],"examples":[36],"find":[38],"a":[39,48],"match":[40],"for,":[41],"extract":[42],"identical":[43],"parts":[44],"between,":[45],"or":[46,84],"trace":[47],"path":[49],"from":[50,87],"any":[51],"components.":[53],"To":[54],"support":[55],"query,":[58],"users":[59],"can":[60],"composite":[61],"visualizations":[63],"through":[64],"that":[68],"use":[69],"infer":[72],"users\u2019":[73],"intentions":[74],"in":[75],"process.":[78],"By":[79],"allowing":[80],"selection":[81],"one":[83],"more":[85],"objects":[86],"multiple":[88],"on-screen":[89],"grouped":[90],"graphs":[91],"as":[92,100],"inputs":[94],"using":[96],"outputs":[99],"next-query":[101],"inputs,":[102],"achieve":[111],"intuitiveness,":[112],"concurrence,":[113],"dynamics":[115],"for":[116],"exploration.":[118]},"counts_by_year":[{"year":2020,"cited_by_count":2}],"updated_date":"2026-05-04T06:00:05.808912","created_date":"2025-10-10T00:00:00"}
