{"id":"https://openalex.org/W4226100175","doi":"https://doi.org/10.1177/14604582221083850","title":"Developing a pneumonia diagnosis ontology from multiple knowledge sources","display_name":"Developing a pneumonia diagnosis ontology from multiple knowledge sources","publication_year":2022,"publication_date":"2022-04-01","ids":{"openalex":"https://openalex.org/W4226100175","doi":"https://doi.org/10.1177/14604582221083850","pmid":"https://pubmed.ncbi.nlm.nih.gov/35377253"},"language":"en","primary_location":{"id":"doi:10.1177/14604582221083850","is_oa":true,"landing_page_url":"https://doi.org/10.1177/14604582221083850","pdf_url":null,"source":{"id":"https://openalex.org/S201800618","display_name":"Health Informatics Journal","issn_l":"1460-4582","issn":["1460-4582","1741-2811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Health Informatics Journal","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1177/14604582221083850","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065727110","display_name":"Sabrina Azzi","orcid":"https://orcid.org/0000-0003-2448-9819"},"institutions":[{"id":"https://openalex.org/I33217400","display_name":"Universit\u00e9 du Qu\u00e9bec en Outaouais","ror":"https://ror.org/011pqxa69","country_code":"CA","type":"education","lineage":["https://openalex.org/I33217400","https://openalex.org/I49663120"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Sabrina Azzi","raw_affiliation_strings":["University of Quebec in Outaouais, Canada"],"affiliations":[{"raw_affiliation_string":"University of Quebec in Outaouais, Canada","institution_ids":["https://openalex.org/I33217400"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003147487","display_name":"Wojtek Michalowski","orcid":"https://orcid.org/0000-0002-9198-6439"},"institutions":[{"id":"https://openalex.org/I153718931","display_name":"University of Ottawa","ror":"https://ror.org/03c4mmv16","country_code":"CA","type":"education","lineage":["https://openalex.org/I153718931"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Wojtek Michalowski","raw_affiliation_strings":["University of Ottawa, Canada"],"affiliations":[{"raw_affiliation_string":"University of Ottawa, Canada","institution_ids":["https://openalex.org/I153718931"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050619834","display_name":"Michal Iglewski","orcid":"https://orcid.org/0000-0002-0236-660X"},"institutions":[{"id":"https://openalex.org/I33217400","display_name":"Universit\u00e9 du Qu\u00e9bec en Outaouais","ror":"https://ror.org/011pqxa69","country_code":"CA","type":"education","lineage":["https://openalex.org/I33217400","https://openalex.org/I49663120"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Michal Iglewski","raw_affiliation_strings":["University of Quebec in Outaouais, Canada"],"affiliations":[{"raw_affiliation_string":"University of Quebec in Outaouais, Canada","institution_ids":["https://openalex.org/I33217400"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5065727110"],"corresponding_institution_ids":["https://openalex.org/I33217400"],"apc_list":{"value":1500,"currency":"USD","value_usd":1500},"apc_paid":{"value":1500,"currency":"USD","value_usd":1500},"fwci":0.5147,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.60501814,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"28","issue":"2","first_page":"14604582221083850","last_page":"14604582221083850"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9793000221252441,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9769999980926514,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7723388671875},{"id":"https://openalex.org/keywords/pneumonia","display_name":"Pneumonia","score":0.62574702501297},{"id":"https://openalex.org/keywords/prot\u00e9g\u00e9","display_name":"Prot\u00e9g\u00e9","score":0.6229047775268555},{"id":"https://openalex.org/keywords/medical-diagnosis","display_name":"Medical diagnosis","score":0.5978500247001648},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.4606684446334839},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.4574136435985565},{"id":"https://openalex.org/keywords/knowledge-representation-and-reasoning","display_name":"Knowledge representation and reasoning","score":0.45341265201568604},{"id":"https://openalex.org/keywords/intensive-care-medicine","display_name":"Intensive care medicine","score":0.44694894552230835},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4151991605758667},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3276771306991577},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.3036138415336609},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.2928217649459839},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.25317591428756714},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2330167591571808},{"id":"https://openalex.org/keywords/process-ontology","display_name":"Process ontology","score":0.1774432361125946},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.15273261070251465},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.12292784452438354},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.07996204495429993}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7723388671875},{"id":"https://openalex.org/C2777914695","wikidata":"https://www.wikidata.org/wiki/Q12192","display_name":"Pneumonia","level":2,"score":0.62574702501297},{"id":"https://openalex.org/C2779247653","wikidata":"https://www.wikidata.org/wiki/Q2066865","display_name":"Prot\u00e9g\u00e9","level":3,"score":0.6229047775268555},{"id":"https://openalex.org/C534262118","wikidata":"https://www.wikidata.org/wiki/Q177719","display_name":"Medical diagnosis","level":2,"score":0.5978500247001648},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4606684446334839},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.4574136435985565},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.45341265201568604},{"id":"https://openalex.org/C177713679","wikidata":"https://www.wikidata.org/wiki/Q679690","display_name":"Intensive care medicine","level":1,"score":0.44694894552230835},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4151991605758667},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3276771306991577},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.3036138415336609},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.2928217649459839},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.25317591428756714},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2330167591571808},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.1774432361125946},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.15273261070251465},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.12292784452438354},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.07996204495429993},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011014","descriptor_name":"Pneumonia","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D011014","descriptor_name":"Pneumonia","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D011014","descriptor_name":"Pneumonia","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1177/14604582221083850","is_oa":true,"landing_page_url":"https://doi.org/10.1177/14604582221083850","pdf_url":null,"source":{"id":"https://openalex.org/S201800618","display_name":"Health Informatics Journal","issn_l":"1460-4582","issn":["1460-4582","1741-2811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Health Informatics Journal","raw_type":"journal-article"},{"id":"pmid:35377253","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35377253","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Health informatics journal","raw_type":null}],"best_oa_location":{"id":"doi:10.1177/14604582221083850","is_oa":true,"landing_page_url":"https://doi.org/10.1177/14604582221083850","pdf_url":null,"source":{"id":"https://openalex.org/S201800618","display_name":"Health Informatics Journal","issn_l":"1460-4582","issn":["1460-4582","1741-2811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Health Informatics Journal","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4099999964237213}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W55501266","https://openalex.org/W1504403914","https://openalex.org/W1573981182","https://openalex.org/W1590255531","https://openalex.org/W1999234934","https://openalex.org/W2001480761","https://openalex.org/W2007757914","https://openalex.org/W2028798134","https://openalex.org/W2078161054","https://openalex.org/W2109328986","https://openalex.org/W2109449901","https://openalex.org/W2113142309","https://openalex.org/W2115294179","https://openalex.org/W2117803890","https://openalex.org/W2122164289","https://openalex.org/W2138425832","https://openalex.org/W2149040964","https://openalex.org/W2301209836","https://openalex.org/W2396881363","https://openalex.org/W2528570251","https://openalex.org/W2620878783","https://openalex.org/W2755800821","https://openalex.org/W2791800558","https://openalex.org/W2793706297","https://openalex.org/W2804782285","https://openalex.org/W2944541171","https://openalex.org/W2968051021","https://openalex.org/W2995533635","https://openalex.org/W2998175885","https://openalex.org/W3018931145","https://openalex.org/W3090469559","https://openalex.org/W4233571851","https://openalex.org/W6636215346"],"related_works":["https://openalex.org/W2166636248","https://openalex.org/W2102637803","https://openalex.org/W2373434917","https://openalex.org/W2052959844","https://openalex.org/W79623841","https://openalex.org/W2148808972","https://openalex.org/W2797127246","https://openalex.org/W2036815240","https://openalex.org/W2083115536","https://openalex.org/W2793104901"],"abstract_inverted_index":{"<b>Background:</b>":[0],"Pneumonia":[1,53],"is":[2,50,146,189],"difficult":[3],"to":[4,28,51,98],"differentiate":[5],"from":[6,25,109,126,134,184],"other":[7],"pulmonary":[8],"diseases":[9],"because":[10],"it":[11],"shares":[12],"many":[13],"symptoms":[14],"with":[15],"these":[16],"diseases.":[17],"Diagnosing":[18],"pneumonia":[19,81,181],"in":[20,88,191],"clinical":[21,33,75,137,141,167,173],"practice":[22,76],"would":[23],"benefit":[24],"having":[26],"access":[27],"a":[29,38,85,100,147,152],"codified":[30],"representation":[31],"of":[32,47,93,103,155,163],"knowledge.":[34],"An":[35],"ontology":[36,149],"represents":[37],"well-established":[39],"paradigm":[40],"for":[41],"such":[42],"codification.":[43],"<b>Objectives:</b>":[44],"The":[45],"goal":[46],"this":[48],"research":[49],"create":[52],"Diagnosis":[54],"Ontology":[55,114],"(PNADO)":[56],"that":[57,159],"brings":[58],"together":[59],"the":[60,80,104,127,135,192],"medical":[61,66],"knowledge":[62,67,186],"dispersed":[63],"among":[64],"multiple":[65,185],"sources.":[68,187],"<b>Material":[69],"and":[70,112,117,139,150,157,171,176],"Methods:</b>":[71],"We":[72],"used":[73],"several":[74],"guidelines":[77],"(CPGs)":[78],"describing":[79],"diagnostic":[82,182],"process":[83],"as":[84],"starting":[86],"point":[87],"developing":[89],"PNADO.":[90],"Preliminary":[91],"version":[92],"PNADO":[94,119,145,179],"was":[95,120],"subsequently":[96],"expanded":[97],"cover":[99,160],"broader":[101],"range":[102],"concepts":[105,125,183],"by":[106,122,140],"reusing":[107],"ontologies":[108],"Open":[110],"Biological":[111],"Biomedical":[113],"(OBO)":[115],"Foundry":[116],"BioPortal.":[118],"evaluated":[121],"examining":[123],"relevant":[124],"pneumonia-specific":[128],"systematic":[129],"reviews,":[130],"using":[131],"patient":[132],"data":[133],"MIMIC-III":[136],"dataset,":[138],"domain":[142],"experts.":[143],"<b>Results:</b>":[144],"comprehensive":[148],"has":[151],"rich":[153],"set":[154],"classes":[156],"properties":[158],"different":[161],"types":[162],"pneumonia,":[164],"pathogens,":[165],"symptoms,":[166],"signs,":[168],"laboratory":[169],"tests":[170],"imaging,":[172],"findings,":[174],"complications,":[175],"diagnoses.":[177],"<b>Conclusion:</b>":[178],"unifies":[180],"It":[188],"available":[190],"BioPortal":[193],"repository.":[194]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
