{"id":"https://openalex.org/W4385380244","doi":"https://doi.org/10.1177/10943420231188077","title":"Running ahead of evolution\u2014AI-based simulation for predicting future high-risk SARS-CoV-2 variants","display_name":"Running ahead of evolution\u2014AI-based simulation for predicting future high-risk SARS-CoV-2 variants","publication_year":2023,"publication_date":"2023-07-29","ids":{"openalex":"https://openalex.org/W4385380244","doi":"https://doi.org/10.1177/10943420231188077"},"language":"en","primary_location":{"id":"doi:10.1177/10943420231188077","is_oa":false,"landing_page_url":"https://doi.org/10.1177/10943420231188077","pdf_url":null,"source":{"id":"https://openalex.org/S60606485","display_name":"The International Journal of High Performance Computing Applications","issn_l":"1094-3420","issn":["1094-3420","1741-2846"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The International Journal of High Performance Computing Applications","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100332984","display_name":"Jie Chen","orcid":"https://orcid.org/0000-0002-9765-4523"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Chen","raw_affiliation_strings":["AI for Science (AI4S)-Preferred Program, Peking University; Shenzhen Graduate School, China","Peng Cheng Laboratory, Shenzhen, China","School of Electronic and Computer Engineering, Peking University, Shenzhen, China","Shenzhen Graduate School, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AI for Science (AI4S)-Preferred Program, Peking University; Shenzhen Graduate School, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Peng Cheng Laboratory, Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]},{"raw_affiliation_string":"School of Electronic and Computer Engineering, Peking University, Shenzhen, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Shenzhen Graduate School, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038600944","display_name":"Zhiwei Nie","orcid":"https://orcid.org/0000-0002-2781-5248"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiwei Nie","raw_affiliation_strings":["AI for Science (AI4S)-Preferred Program, Peking University; Shenzhen Graduate School, China","Peng Cheng Laboratory, Shenzhen, China","School of Electronic and Computer Engineering, Peking University, Shenzhen, China","Shenzhen Graduate School, China"],"raw_orcid":"https://orcid.org/0000-0002-2781-5248","affiliations":[{"raw_affiliation_string":"AI for Science (AI4S)-Preferred Program, Peking University; Shenzhen Graduate School, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Peng Cheng Laboratory, Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]},{"raw_affiliation_string":"School of Electronic and Computer Engineering, Peking University, Shenzhen, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Shenzhen Graduate School, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053242621","display_name":"Yu Wang","orcid":"https://orcid.org/0000-0003-4976-9366"},"institutions":[{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Wang","raw_affiliation_strings":["Peng Cheng Laboratory, Shenzhen, China"],"raw_orcid":"https://orcid.org/0000-0003-4976-9366","affiliations":[{"raw_affiliation_string":"Peng Cheng Laboratory, Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100437036","display_name":"Kai Wang","orcid":"https://orcid.org/0000-0002-6170-4744"},"institutions":[{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kai Wang","raw_affiliation_strings":["Peng Cheng Laboratory, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Peng Cheng Laboratory, Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100578497","display_name":"Fan Xu","orcid":"https://orcid.org/0009-0000-5479-3067"},"institutions":[{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fan Xu","raw_affiliation_strings":["Peng Cheng Laboratory, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Peng Cheng Laboratory, Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108824644","display_name":"Zhiheng Hu","orcid":"https://orcid.org/0009-0004-7821-070X"},"institutions":[{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiheng Hu","raw_affiliation_strings":["Peng Cheng Laboratory, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Peng Cheng Laboratory, Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084200957","display_name":"Bing Zheng","orcid":"https://orcid.org/0000-0001-6112-8591"},"institutions":[{"id":"https://openalex.org/I3131625388","display_name":"University Town of Shenzhen","ror":"https://ror.org/05f5j6225","country_code":"CN","type":"education","lineage":["https://openalex.org/I3131625388"]},{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bing Zheng","raw_affiliation_strings":["Peng Cheng Laboratory, Shenzhen, China","Shenzhen International Graduate School, Tsinghua University, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Peng Cheng Laboratory, Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]},{"raw_affiliation_string":"Shenzhen International Graduate School, Tsinghua University, Shenzhen, China","institution_ids":["https://openalex.org/I3131625388","https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101874415","display_name":"Zhennan Wang","orcid":"https://orcid.org/0000-0002-5814-3798"},"institutions":[{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhennan Wang","raw_affiliation_strings":["Peng Cheng Laboratory, Shenzhen, China"],"raw_orcid":"https://orcid.org/0000-0002-5814-3798","affiliations":[{"raw_affiliation_string":"Peng Cheng Laboratory, Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008752777","display_name":"Guoli Song","orcid":"https://orcid.org/0000-0002-5452-3697"},"institutions":[{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guoli Song","raw_affiliation_strings":["Peng Cheng Laboratory, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Peng Cheng Laboratory, Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100458630","display_name":"Jingyi Zhang","orcid":"https://orcid.org/0000-0002-9405-5672"},"institutions":[{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingyi Zhang","raw_affiliation_strings":["Peng Cheng Laboratory, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Peng Cheng Laboratory, Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101713885","display_name":"Jie Fu","orcid":"https://orcid.org/0000-0002-4494-843X"},"institutions":[{"id":"https://openalex.org/I4210100255","display_name":"Beijing Academy of Artificial Intelligence","ror":"https://ror.org/016a74861","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210100255"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Fu","raw_affiliation_strings":["Beijing Academy of Artificial Intelligence, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0002-4494-843X","affiliations":[{"raw_affiliation_string":"Beijing Academy of Artificial Intelligence, Beijing, China","institution_ids":["https://openalex.org/I4210100255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049111913","display_name":"Xiansong Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiansong Huang","raw_affiliation_strings":["Peng Cheng Laboratory, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Peng Cheng Laboratory, Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101762291","display_name":"Zhongqi Wang","orcid":"https://orcid.org/0000-0002-2097-1782"},"institutions":[{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhongqi Wang","raw_affiliation_strings":["Peng Cheng Laboratory, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Peng Cheng Laboratory, Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070028902","display_name":"Zhixiang Ren","orcid":"https://orcid.org/0000-0002-4104-3790"},"institutions":[{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhixiang Ren","raw_affiliation_strings":["Peng Cheng Laboratory, Shenzhen, China"],"raw_orcid":"https://orcid.org/0000-0002-4104-3790","affiliations":[{"raw_affiliation_string":"Peng Cheng Laboratory, Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076043452","display_name":"Qiankun Wang","orcid":"https://orcid.org/0000-0003-2465-1468"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiankun Wang","raw_affiliation_strings":["Peng Cheng Laboratory, Shenzhen, China","State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic and Developmental Sciences and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":"https://orcid.org/0000-0003-2465-1468","affiliations":[{"raw_affiliation_string":"Peng Cheng Laboratory, Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]},{"raw_affiliation_string":"State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic and Developmental Sciences and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010248726","display_name":"Daixi Li","orcid":"https://orcid.org/0000-0002-7112-2801"},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]},{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Daixi Li","raw_affiliation_strings":["Peng Cheng Laboratory, Shenzhen, China","School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai, China"],"raw_orcid":"https://orcid.org/0000-0002-7112-2801","affiliations":[{"raw_affiliation_string":"Peng Cheng Laboratory, Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]},{"raw_affiliation_string":"School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai, China","institution_ids":["https://openalex.org/I148128674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041491902","display_name":"Dong\u2010Qing Wei","orcid":"https://orcid.org/0000-0003-4200-7502"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dongqing Wei","raw_affiliation_strings":["Peng Cheng Laboratory, Shenzhen, China","State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic and Developmental Sciences and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Peng Cheng Laboratory, Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]},{"raw_affiliation_string":"State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic and Developmental Sciences and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034630762","display_name":"Bin Zhou","orcid":"https://orcid.org/0000-0002-1535-6283"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin Zhou","raw_affiliation_strings":["Peng Cheng Laboratory, Shenzhen, China","School of Information Science and Engineering, Shandong University, Qingdao, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Peng Cheng Laboratory, Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]},{"raw_affiliation_string":"School of Information Science and Engineering, Shandong University, Qingdao, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110376525","display_name":"Chao Yang","orcid":"https://orcid.org/0009-0008-5880-5086"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chao Yang","raw_affiliation_strings":["ICODE and School of Mathematical Sciences, Peking University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICODE and School of Mathematical Sciences, Peking University, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023918894","display_name":"Yonghong Tian","orcid":"https://orcid.org/0000-0002-2978-5935"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yonghong Tian","raw_affiliation_strings":["AI for Science (AI4S)-Preferred Program, Peking University; Shenzhen Graduate School, China","Peng Cheng Laboratory, Shenzhen, China","School of Computer Science, Peking University, China","School of Electronic and Computer Engineering, Peking University, Shenzhen, China","Shenzhen Graduate School, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AI for Science (AI4S)-Preferred Program, Peking University; Shenzhen Graduate School, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Peng Cheng Laboratory, Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]},{"raw_affiliation_string":"School of Computer Science, Peking University, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"School of Electronic and Computer Engineering, Peking University, Shenzhen, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Shenzhen Graduate School, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5023918894"],"corresponding_institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210136793"],"apc_list":null,"apc_paid":null,"fwci":2.0505,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.86867941,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"37","issue":"6","first_page":"650","last_page":"665"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.972100019454956,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7560540437698364},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.7062228918075562},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6399011015892029},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.624653160572052},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.6237634420394897},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.5997275710105896},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5136551260948181},{"id":"https://openalex.org/keywords/2019-20-coronavirus-outbreak","display_name":"2019-20 coronavirus outbreak","score":0.5015923976898193},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.4893319010734558},{"id":"https://openalex.org/keywords/pandemic","display_name":"Pandemic","score":0.4644854664802551},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.4462675154209137},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35668691992759705},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2797132134437561},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.22466236352920532},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2118789255619049},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18790540099143982},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.18244728446006775},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.15061813592910767},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.10054650902748108}],"concepts":[{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7560540437698364},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.7062228918075562},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6399011015892029},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.624653160572052},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.6237634420394897},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.5997275710105896},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5136551260948181},{"id":"https://openalex.org/C3006700255","wikidata":"https://www.wikidata.org/wiki/Q81068910","display_name":"2019-20 coronavirus outbreak","level":3,"score":0.5015923976898193},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.4893319010734558},{"id":"https://openalex.org/C89623803","wikidata":"https://www.wikidata.org/wiki/Q12184","display_name":"Pandemic","level":5,"score":0.4644854664802551},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.4462675154209137},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35668691992759705},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2797132134437561},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.22466236352920532},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2118789255619049},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18790540099143982},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.18244728446006775},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.15061813592910767},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.10054650902748108},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C116675565","wikidata":"https://www.wikidata.org/wiki/Q3241045","display_name":"Outbreak","level":2,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1177/10943420231188077","is_oa":false,"landing_page_url":"https://doi.org/10.1177/10943420231188077","pdf_url":null,"source":{"id":"https://openalex.org/S60606485","display_name":"The International Journal of High Performance Computing Applications","issn_l":"1094-3420","issn":["1094-3420","1741-2846"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The International Journal of High Performance Computing Applications","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.8399999737739563,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G5334537529","display_name":null,"funder_award_id":"No. 2019B1515120049","funder_id":"https://openalex.org/F4320337111","funder_display_name":"Basic and Applied Basic Research Foundation of Guangdong Province"},{"id":"https://openalex.org/G7518146602","display_name":null,"funder_award_id":"No. 2020B1111340056","funder_id":"https://openalex.org/F4320324202","funder_display_name":"Guangdong Science and Technology Department"}],"funders":[{"id":"https://openalex.org/F4320324202","display_name":"Guangdong Science and Technology Department","ror":"https://ror.org/00tjzgn92"},{"id":"https://openalex.org/F4320337111","display_name":"Basic and Applied Basic Research Foundation of Guangdong Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W1517000857","https://openalex.org/W1965531501","https://openalex.org/W1966238900","https://openalex.org/W1971784866","https://openalex.org/W1976571194","https://openalex.org/W1991599908","https://openalex.org/W2000519643","https://openalex.org/W2006785079","https://openalex.org/W2044139515","https://openalex.org/W2076048958","https://openalex.org/W2125359798","https://openalex.org/W2132260239","https://openalex.org/W2134599124","https://openalex.org/W2144658220","https://openalex.org/W2157552136","https://openalex.org/W2166867592","https://openalex.org/W2169197527","https://openalex.org/W2306794997","https://openalex.org/W2605343262","https://openalex.org/W2617242334","https://openalex.org/W2622263826","https://openalex.org/W2766931063","https://openalex.org/W2886709672","https://openalex.org/W2896457183","https://openalex.org/W2912459817","https://openalex.org/W2963026768","https://openalex.org/W2963959597","https://openalex.org/W2965373594","https://openalex.org/W2970597249","https://openalex.org/W2996428491","https://openalex.org/W3004280078","https://openalex.org/W3004318991","https://openalex.org/W3004348779","https://openalex.org/W3007643904","https://openalex.org/W3008142620","https://openalex.org/W3009335299","https://openalex.org/W3009906937","https://openalex.org/W3009912996","https://openalex.org/W3036529319","https://openalex.org/W3037045207","https://openalex.org/W3044722686","https://openalex.org/W3048714202","https://openalex.org/W3144701084","https://openalex.org/W3146944767","https://openalex.org/W3161898848","https://openalex.org/W3164088920","https://openalex.org/W3177500196","https://openalex.org/W3210524078","https://openalex.org/W3211290194","https://openalex.org/W4210651320","https://openalex.org/W4210827510","https://openalex.org/W4225249066","https://openalex.org/W4226357916","https://openalex.org/W4229075351","https://openalex.org/W4236541940","https://openalex.org/W4281383093","https://openalex.org/W4288066876","https://openalex.org/W4293193292","https://openalex.org/W4385245566"],"related_works":["https://openalex.org/W2058965144","https://openalex.org/W2164382479","https://openalex.org/W2146343568","https://openalex.org/W98480971","https://openalex.org/W2150291671","https://openalex.org/W2013643406","https://openalex.org/W2027972911","https://openalex.org/W2157978810","https://openalex.org/W3138386522","https://openalex.org/W2499279132"],"abstract_inverted_index":{"The":[0],"never-ending":[1],"emergence":[2],"of":[3,6,61,84,91,116],"SARS-CoV-2":[4,30,72],"variations":[5],"concern":[7],"(VOCs)":[8],"has":[9],"challenged":[10],"the":[11,59,68,81,129],"whole":[12],"world":[13],"for":[14,58,131,139],"pandemic":[15,142],"control.":[16],"In":[17],"order":[18,136],"to":[19,27,99,137,154],"develop":[20],"effective":[21],"drugs":[22],"and":[23,36,53,64,87,105],"vaccines,":[24],"one":[25],"needs":[26],"efficiently":[28],"simulate":[29],"spike":[31],"receptor-binding":[32],"domain":[33],"(RBD)":[34],"mutations":[35,79],"identify":[37,78],"high-risk":[38],"variants.":[39],"We":[40],"pretrain":[41],"a":[42,55,113,140],"large":[43],"protein":[44,51],"language":[45],"model":[46],"with":[47,102],"approximately":[48],"408":[49],"million":[50],"sequences":[52],"construct":[54],"high-throughput":[56],"screening":[57],"prediction":[60],"binding":[62],"affinity":[63],"antibody":[65],"escape.":[66],"As":[67],"first":[69],"work":[70],"on":[71,123],"RBD":[73,82],"mutation":[74],"simulation,":[75],"we":[76],"successfully":[77],"in":[80,94,108,135],"regions":[83],"5":[85],"VOCs":[86],"can":[88],"screen":[89],"millions":[90],"potential":[92],"variants":[93],"seconds.":[95],"Our":[96,126,148],"workflow":[97],"scales":[98],"4096":[100],"NPUs":[101],"96.5%":[103],"scalability":[104],"493.9\u00d7":[106],"speedup":[107],"mixed-precision":[109],"computing,":[110],"while":[111],"achieving":[112],"peak":[114],"performance":[115],"366.8":[117],"PFLOPS":[118],"(reaching":[119],"34.9%":[120],"theoretical":[121],"peak)":[122],"Pengcheng":[124],"Cloudbrain-II.":[125],"method":[127],"paves":[128],"way":[130],"simulating":[132],"coronavirus":[133],"evolution":[134],"prepare":[138],"future":[141,156],"that":[143],"will":[144],"inevitably":[145],"take":[146],"place.":[147],"models":[149],"are":[150],"released":[151],"at":[152],"https://github.com/ZhiweiNiepku/SARS-CoV-2_mutation_simulation":[153],"facilitate":[155],"related":[157],"work.":[158]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
