{"id":"https://openalex.org/W4306945468","doi":"https://doi.org/10.1177/10943420221127034","title":"Data-driven scalable pipeline using national agent-based models for real-time pandemic response and decision support","display_name":"Data-driven scalable pipeline using national agent-based models for real-time pandemic response and decision support","publication_year":2022,"publication_date":"2022-10-20","ids":{"openalex":"https://openalex.org/W4306945468","doi":"https://doi.org/10.1177/10943420221127034","pmid":"https://pubmed.ncbi.nlm.nih.gov/38603425"},"language":"en","primary_location":{"id":"doi:10.1177/10943420221127034","is_oa":false,"landing_page_url":"https://doi.org/10.1177/10943420221127034","pdf_url":null,"source":{"id":"https://openalex.org/S60606485","display_name":"The International Journal of High Performance Computing Applications","issn_l":"1094-3420","issn":["1094-3420","1741-2846"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The International Journal of High Performance Computing Applications","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9596688/pdf/10.1177_10943420221127034.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064307334","display_name":"Parantapa Bhattacharya","orcid":"https://orcid.org/0000-0002-3626-9939"},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Parantapa Bhattacharya","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":"https://orcid.org/0000-0002-3626-9939","affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065844089","display_name":"Jiangzhuo Chen","orcid":"https://orcid.org/0000-0002-2729-3881"},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiangzhuo Chen","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081050112","display_name":"Stefan Hoops","orcid":"https://orcid.org/0000-0001-8503-8371"},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stefan Hoops","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003775830","display_name":"Dustin Machi","orcid":"https://orcid.org/0000-0002-9081-6526"},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dustin Machi","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072570670","display_name":"Bryan Lewis","orcid":"https://orcid.org/0000-0003-0793-6082"},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bryan Lewis","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057315009","display_name":"Srinivasan Venkatramanan","orcid":"https://orcid.org/0000-0002-0874-8692"},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Srinivasan Venkatramanan","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":"https://orcid.org/0000-0002-0874-8692","affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073411729","display_name":"Mandy Wilson","orcid":"https://orcid.org/0000-0002-4778-5744"},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mandy L. Wilson","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025284936","display_name":"Brian Klahn","orcid":"https://orcid.org/0000-0002-4690-9944"},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian Klahn","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031381738","display_name":"Aniruddha Adiga","orcid":"https://orcid.org/0000-0002-5396-1978"},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aniruddha Adiga","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008261688","display_name":"Benjamin Hurt","orcid":"https://orcid.org/0000-0002-3803-2900"},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin Hurt","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":"https://orcid.org/0000-0002-3803-2900","affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026015531","display_name":"Joseph Outten","orcid":"https://orcid.org/0000-0003-1588-4382"},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph Outten","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019703184","display_name":"Abhijin Adiga","orcid":"https://orcid.org/0000-0002-9770-034X"},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abhijin Adiga","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016058860","display_name":"Andrew Warren","orcid":"https://orcid.org/0000-0003-2660-0103"},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Warren","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":"https://orcid.org/0000-0003-2660-0103","affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040494469","display_name":"Young Yun Baek","orcid":null},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Young Yun Baek","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017416729","display_name":"Przemyslaw Porebski","orcid":"https://orcid.org/0000-0001-8012-5791"},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Przemyslaw Porebski","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":"https://orcid.org/0000-0001-8012-5791","affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040926780","display_name":"Achla Marathe","orcid":"https://orcid.org/0000-0002-0258-1588"},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Achla Marathe","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","Dept. of Public Health Sciences, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]},{"raw_affiliation_string":"Dept. of Public Health Sciences, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005645577","display_name":"Dawen Xie","orcid":null},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dawen Xie","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087402200","display_name":"Samarth Swarup","orcid":"https://orcid.org/0000-0003-3615-1663"},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Samarth Swarup","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044848288","display_name":"Anil Vullikanti","orcid":"https://orcid.org/0000-0002-8597-6197"},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anil Vullikanti","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","Dept. of Computer Science, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]},{"raw_affiliation_string":"Dept. of Computer Science, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079309664","display_name":"Henning Mortveit","orcid":"https://orcid.org/0000-0003-3363-2947"},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Henning Mortveit","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","Dept. of Eng. Systems and Environment, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]},{"raw_affiliation_string":"Dept. of Eng. Systems and Environment, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030954130","display_name":"Stephen Eubank","orcid":"https://orcid.org/0000-0002-7177-309X"},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen Eubank","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","Dept. of Public Health Sciences, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]},{"raw_affiliation_string":"Dept. of Public Health Sciences, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103176355","display_name":"Christopher L. Barrett","orcid":"https://orcid.org/0000-0003-2518-0039"},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher L. Barrett","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","Dept. of Computer Science, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]},{"raw_affiliation_string":"Dept. of Computer Science, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020293284","display_name":"Madhav Marathe","orcid":"https://orcid.org/0000-0003-1653-0658"},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Madhav Marathe","raw_affiliation_strings":["Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","Dept. of Computer Science, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":"https://orcid.org/0000-0003-1653-0658","affiliations":[{"raw_affiliation_string":"Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381","https://openalex.org/I4210151352"]},{"raw_affiliation_string":"Dept. of Computer Science, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":23,"corresponding_author_ids":["https://openalex.org/A5020293284"],"corresponding_institution_ids":["https://openalex.org/I4210151352","https://openalex.org/I51556381"],"apc_list":null,"apc_paid":null,"fwci":2.3384,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.88489968,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"37","issue":"1","first_page":"4","last_page":"27"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9803000092506409,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11819","display_name":"Data-Driven Disease Surveillance","score":0.964900016784668,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6959841251373291},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6276726722717285},{"id":"https://openalex.org/keywords/scheduling","display_name":"Scheduling (production processes)","score":0.5469487309455872},{"id":"https://openalex.org/keywords/initialization","display_name":"Initialization","score":0.48972514271736145},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.45875266194343567},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.4533906579017639},{"id":"https://openalex.org/keywords/decision-support-system","display_name":"Decision support system","score":0.4215264916419983},{"id":"https://openalex.org/keywords/operations-research","display_name":"Operations research","score":0.40764862298965454},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3745366632938385},{"id":"https://openalex.org/keywords/real-time-computing","display_name":"Real-time computing","score":0.3403896987438202},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.22409573197364807},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1557157337665558},{"id":"https://openalex.org/keywords/operations-management","display_name":"Operations management","score":0.12155747413635254},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.11904868483543396}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6959841251373291},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6276726722717285},{"id":"https://openalex.org/C206729178","wikidata":"https://www.wikidata.org/wiki/Q2271896","display_name":"Scheduling (production processes)","level":2,"score":0.5469487309455872},{"id":"https://openalex.org/C114466953","wikidata":"https://www.wikidata.org/wiki/Q6034165","display_name":"Initialization","level":2,"score":0.48972514271736145},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.45875266194343567},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.4533906579017639},{"id":"https://openalex.org/C107327155","wikidata":"https://www.wikidata.org/wiki/Q330268","display_name":"Decision support system","level":2,"score":0.4215264916419983},{"id":"https://openalex.org/C42475967","wikidata":"https://www.wikidata.org/wiki/Q194292","display_name":"Operations research","level":1,"score":0.40764862298965454},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3745366632938385},{"id":"https://openalex.org/C79403827","wikidata":"https://www.wikidata.org/wiki/Q3988","display_name":"Real-time computing","level":1,"score":0.3403896987438202},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.22409573197364807},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1557157337665558},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.12155747413635254},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.11904868483543396},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1177/10943420221127034","is_oa":false,"landing_page_url":"https://doi.org/10.1177/10943420221127034","pdf_url":null,"source":{"id":"https://openalex.org/S60606485","display_name":"The International Journal of High Performance Computing Applications","issn_l":"1094-3420","issn":["1094-3420","1741-2846"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The International Journal of High Performance Computing Applications","raw_type":"journal-article"},{"id":"pmid:38603425","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38603425","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The international journal of high performance computing applications","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9596688","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9596688","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9596688/pdf/10.1177_10943420221127034.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Int J High Perform Comput Appl","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:9596688","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9596688","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9596688/pdf/10.1177_10943420221127034.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Int J High Perform Comput Appl","raw_type":"Text"},"sustainable_development_goals":[{"score":0.75,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G2225389582","display_name":null,"funder_award_id":"S-D00189-15-TO-01- UVA","funder_id":"https://openalex.org/F4320332186","funder_display_name":"Defense Threat Reduction Agency"},{"id":"https://openalex.org/G2372087932","display_name":null,"funder_award_id":"CCF-1918656","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3416031122","display_name":null,"funder_award_id":"R01GM109718","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3505574271","display_name":null,"funder_award_id":"CNS-2028004","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3515327116","display_name":null,"funder_award_id":"TG-BIO210084","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3641276455","display_name":null,"funder_award_id":"VDH-21-501-0135","funder_id":"https://openalex.org/F4320308201","funder_display_name":"Virginia Department of Health"},{"id":"https://openalex.org/G3828073557","display_name":null,"funder_award_id":"OAC-1916805","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3858435652","display_name":null,"funder_award_id":"OAC-2027541","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4656488385","display_name":null,"funder_award_id":"RAPID OAC-2027541","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4717033986","display_name":null,"funder_award_id":"OAC-2027541","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4764765674","display_name":"RAPID: Collaborative: Transfer Learning Techniques for Better Response to COVID-19 in the US","funder_award_id":"2028004","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4966575984","display_name":null,"funder_award_id":"OAC-1916805","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5024895080","display_name":null,"funder_award_id":"75D30119C05935","funder_id":"https://openalex.org/F4320332162","funder_display_name":"Centers for Disease Control and Prevention"},{"id":"https://openalex.org/G5260964573","display_name":null,"funder_award_id":"CCF-1918656","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5514976981","display_name":null,"funder_award_id":"COVID-19","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5678056985","display_name":null,"funder_award_id":"S-D00189-15-TO-01-UVA","funder_id":"https://openalex.org/F4320332186","funder_display_name":"Defense Threat Reduction Agency"},{"id":"https://openalex.org/G6080052672","display_name":null,"funder_award_id":"OAC-1916805,CCF- 1918656,CCF-1917819,CNS-2028004,O","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6542493234","display_name":null,"funder_award_id":"CCF-1917819","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7115618515","display_name":null,"funder_award_id":"ARA S-D00189-15-TO-01-UVA","funder_id":"https://openalex.org/F4320332186","funder_display_name":"Defense Threat Reduction Agency"},{"id":"https://openalex.org/G7180878835","display_name":null,"funder_award_id":"1917819","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7315863584","display_name":"Collaborative Research: Framework: Software: CINES: A Scalable Cyberinfrastructure for Sustained Innovation in Network Engineering and Science","funder_award_id":"1916805","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8034655586","display_name":null,"funder_award_id":"CNS-2028004","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8146162564","display_name":null,"funder_award_id":"CCF-1917819","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G887741455","display_name":null,"funder_award_id":"1918656","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320308201","display_name":"Virginia Department of Health","ror":"https://ror.org/00j2wht38"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332162","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12"},{"id":"https://openalex.org/F4320332186","display_name":"Defense Threat Reduction Agency","ror":"https://ror.org/04tz64554"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4306945468.pdf"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W1596936080","https://openalex.org/W1965335679","https://openalex.org/W1965499304","https://openalex.org/W1995395876","https://openalex.org/W2005406174","https://openalex.org/W2061370256","https://openalex.org/W2105947650","https://openalex.org/W2108386759","https://openalex.org/W2123100429","https://openalex.org/W2123951972","https://openalex.org/W2143469080","https://openalex.org/W2475844281","https://openalex.org/W2527672088","https://openalex.org/W2730823626","https://openalex.org/W2766499863","https://openalex.org/W2791420655","https://openalex.org/W2900497734","https://openalex.org/W2909350736","https://openalex.org/W2909758842","https://openalex.org/W2945649828","https://openalex.org/W2965118797","https://openalex.org/W2974562547","https://openalex.org/W3004227146","https://openalex.org/W3006028741","https://openalex.org/W3007602081","https://openalex.org/W3010131837","https://openalex.org/W3011452006","https://openalex.org/W3012308615","https://openalex.org/W3013594674","https://openalex.org/W3013967887","https://openalex.org/W3023441241","https://openalex.org/W3048955231","https://openalex.org/W3094700399","https://openalex.org/W3107536900","https://openalex.org/W3112571988","https://openalex.org/W3122828159","https://openalex.org/W3123442891","https://openalex.org/W3127396608","https://openalex.org/W3145724052","https://openalex.org/W3157613802","https://openalex.org/W3168937343","https://openalex.org/W3173465919","https://openalex.org/W3186633320","https://openalex.org/W3196324863","https://openalex.org/W3198831432","https://openalex.org/W3205855894","https://openalex.org/W4205685928","https://openalex.org/W4207054425","https://openalex.org/W4213444601","https://openalex.org/W4240607534","https://openalex.org/W4283210990","https://openalex.org/W4290948106"],"related_works":["https://openalex.org/W2595172197","https://openalex.org/W2084856301","https://openalex.org/W2127970246","https://openalex.org/W2885125400","https://openalex.org/W1001352512","https://openalex.org/W3204184292","https://openalex.org/W1989889224","https://openalex.org/W4382618745","https://openalex.org/W2011430815","https://openalex.org/W4321606653"],"abstract_inverted_index":{"This":[0,107],"paper":[1],"describes":[2],"an":[3,28,92],"integrated,":[4],"data-driven":[5],"operational":[6],"pipeline":[7,23,47,108],"based":[8],"on":[9],"national":[10,53,69,114],"agent-based":[11,97],"models":[12],"to":[13,48,100,146],"support":[14],"federal":[15],"and":[16,20,51,54,60,79,88,104,121,133,136],"state-level":[17],"pandemic":[18],"planning":[19],"response.":[21],"The":[22],"consists":[24],"of":[25,68,75,94,113,138],"(":[26,43,63,90],"i)":[27],"automatic":[29],"semantic-aware":[30],"scheduling":[31],"method":[32],"that":[33],"coordinates":[34],"jobs":[35],"across":[36],"two":[37],"separate":[38],"high":[39],"performance":[40],"computing":[41],"systems;":[42],"ii)":[44],"a":[45,65,95],"data":[46,57],"collect,":[49],"integrate":[50],"organize":[52],"county-level":[55],"disaggregated":[56],"for":[58,125],"initialization":[59],"post-simulation":[61],"analysis;":[62],"iii)":[64],"digital":[66],"twin":[67],"social":[70],"contact":[71],"networks":[72],"made":[73],"up":[74],"288":[76],"Million":[77],"individuals":[78],"12.6":[80],"Billion":[81],"time-varying":[82],"interactions":[83],"covering":[84],"the":[85,123,139,142],"US":[86],"states":[87],"DC;":[89],"iv)":[91],"extension":[93],"parallel":[96],"simulation":[98],"model":[99],"study":[101],"epidemic":[102,151],"dynamics":[103],"associated":[105],"interventions.":[106],"can":[109],"run":[110],"400":[111],"replicates":[112],"runs":[115],"in":[116,129,149],"less":[117],"than":[118],"33":[119],"h,":[120],"reduces":[122],"need":[124],"human":[126],"intervention,":[127],"resulting":[128],"faster":[130],"turnaround":[131],"times":[132],"higher":[134],"reliability":[135],"accuracy":[137],"results.":[140],"Scientifically,":[141],"work":[143],"has":[144],"led":[145],"significant":[147],"advances":[148],"real-time":[150],"sciences.":[152]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
