{"id":"https://openalex.org/W2945562209","doi":"https://doi.org/10.1177/1094342019847732","title":"HYPERDOCK: Improving virtual screening through parallel hyperheuristics","display_name":"HYPERDOCK: Improving virtual screening through parallel hyperheuristics","publication_year":2019,"publication_date":"2019-05-19","ids":{"openalex":"https://openalex.org/W2945562209","doi":"https://doi.org/10.1177/1094342019847732","mag":"2945562209"},"language":"en","primary_location":{"id":"doi:10.1177/1094342019847732","is_oa":true,"landing_page_url":"https://doi.org/10.1177/1094342019847732","pdf_url":"https://journals.sagepub.com/doi/pdf/10.1177/1094342019847732","source":{"id":"https://openalex.org/S60606485","display_name":"The International Journal of High Performance Computing Applications","issn_l":"1094-3420","issn":["1094-3420","1741-2846"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The International Journal of High Performance Computing Applications","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://journals.sagepub.com/doi/pdf/10.1177/1094342019847732","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028232016","display_name":"Baldomero Imbern\u00f3n","orcid":"https://orcid.org/0000-0002-2758-8364"},"institutions":[{"id":"https://openalex.org/I68763199","display_name":"Universidad Cat\u00f3lica San Antonio de Murcia","ror":"https://ror.org/05b1rsv17","country_code":"ES","type":"education","lineage":["https://openalex.org/I68763199"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Baldomero Imbern\u00f3n","raw_affiliation_strings":["Polytechnic School, Universidad Cat\u00f3lica de Murcia (UCAM), Murcia, Spain"],"affiliations":[{"raw_affiliation_string":"Polytechnic School, Universidad Cat\u00f3lica de Murcia (UCAM), Murcia, Spain","institution_ids":["https://openalex.org/I68763199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062127676","display_name":"Antonio Llanes","orcid":"https://orcid.org/0000-0002-9802-4240"},"institutions":[{"id":"https://openalex.org/I68763199","display_name":"Universidad Cat\u00f3lica San Antonio de Murcia","ror":"https://ror.org/05b1rsv17","country_code":"ES","type":"education","lineage":["https://openalex.org/I68763199"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Antonio Llanes","raw_affiliation_strings":["Polytechnic School, Universidad Cat\u00f3lica de Murcia (UCAM), Murcia, Spain"],"affiliations":[{"raw_affiliation_string":"Polytechnic School, Universidad Cat\u00f3lica de Murcia (UCAM), Murcia, Spain","institution_ids":["https://openalex.org/I68763199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023159468","display_name":"Jos\u00e9-Mat\u00edas Cutillas-Lozano","orcid":"https://orcid.org/0000-0003-4359-0058"},"institutions":[{"id":"https://openalex.org/I80180929","display_name":"Universidad de Murcia","ror":"https://ror.org/03p3aeb86","country_code":"ES","type":"education","lineage":["https://openalex.org/I80180929"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jos\u00e9-Mat\u00edas Cutillas-Lozano","raw_affiliation_strings":["Departamento de Inform\u00e1tica y Sistemas, Universidad de Murcia, Murcia, Spain"],"affiliations":[{"raw_affiliation_string":"Departamento de Inform\u00e1tica y Sistemas, Universidad de Murcia, Murcia, Spain","institution_ids":["https://openalex.org/I80180929"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085561586","display_name":"Domingo Gim\u00e9nez","orcid":"https://orcid.org/0000-0003-4827-1320"},"institutions":[{"id":"https://openalex.org/I80180929","display_name":"Universidad de Murcia","ror":"https://ror.org/03p3aeb86","country_code":"ES","type":"education","lineage":["https://openalex.org/I80180929"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Domingo Gim\u00e9nez","raw_affiliation_strings":["Departamento de Inform\u00e1tica y Sistemas, Universidad de Murcia, Murcia, Spain"],"affiliations":[{"raw_affiliation_string":"Departamento de Inform\u00e1tica y Sistemas, Universidad de Murcia, Murcia, Spain","institution_ids":["https://openalex.org/I80180929"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5028232016"],"corresponding_institution_ids":["https://openalex.org/I68763199"],"apc_list":null,"apc_paid":null,"fwci":0.1941,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.51236016,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"34","issue":"1","first_page":"30","last_page":"41"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8277586698532104},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.7198975086212158},{"id":"https://openalex.org/keywords/parallelism","display_name":"Parallelism (grammar)","score":0.6820453405380249},{"id":"https://openalex.org/keywords/metaheuristic","display_name":"Metaheuristic","score":0.679923415184021},{"id":"https://openalex.org/keywords/graphics-processing-unit","display_name":"Graphics processing unit","score":0.6159102916717529},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.6052864789962769},{"id":"https://openalex.org/keywords/multi-core-processor","display_name":"Multi-core processor","score":0.5801188349723816},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.5546410083770752},{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.5119203329086304},{"id":"https://openalex.org/keywords/schema","display_name":"Schema (genetic algorithms)","score":0.5101414322853088},{"id":"https://openalex.org/keywords/data-parallelism","display_name":"Data parallelism","score":0.4723561704158783},{"id":"https://openalex.org/keywords/central-processing-unit","display_name":"Central processing unit","score":0.44444209337234497},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.15395206212997437},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.10100361704826355},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.07940888404846191}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8277586698532104},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.7198975086212158},{"id":"https://openalex.org/C2781172179","wikidata":"https://www.wikidata.org/wiki/Q853109","display_name":"Parallelism (grammar)","level":2,"score":0.6820453405380249},{"id":"https://openalex.org/C109718341","wikidata":"https://www.wikidata.org/wiki/Q1385229","display_name":"Metaheuristic","level":2,"score":0.679923415184021},{"id":"https://openalex.org/C2779851693","wikidata":"https://www.wikidata.org/wiki/Q183484","display_name":"Graphics processing unit","level":2,"score":0.6159102916717529},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.6052864789962769},{"id":"https://openalex.org/C78766204","wikidata":"https://www.wikidata.org/wiki/Q555032","display_name":"Multi-core processor","level":2,"score":0.5801188349723816},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.5546410083770752},{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.5119203329086304},{"id":"https://openalex.org/C52146309","wikidata":"https://www.wikidata.org/wiki/Q7431116","display_name":"Schema (genetic algorithms)","level":2,"score":0.5101414322853088},{"id":"https://openalex.org/C61483411","wikidata":"https://www.wikidata.org/wiki/Q3124522","display_name":"Data parallelism","level":3,"score":0.4723561704158783},{"id":"https://openalex.org/C49154492","wikidata":"https://www.wikidata.org/wiki/Q5300","display_name":"Central processing unit","level":2,"score":0.44444209337234497},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.15395206212997437},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.10100361704826355},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.07940888404846191},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1177/1094342019847732","is_oa":true,"landing_page_url":"https://doi.org/10.1177/1094342019847732","pdf_url":"https://journals.sagepub.com/doi/pdf/10.1177/1094342019847732","source":{"id":"https://openalex.org/S60606485","display_name":"The International Journal of High Performance Computing Applications","issn_l":"1094-3420","issn":["1094-3420","1741-2846"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The International Journal of High Performance Computing Applications","raw_type":"journal-article"},{"id":"pmh:oai:repositorio.ucam.edu:10952/8811","is_oa":true,"landing_page_url":"http://hdl.handle.net/10952/8811","pdf_url":null,"source":{"id":"https://openalex.org/S7407055189","display_name":"RIUCAM","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1177/1094342019847732","is_oa":true,"landing_page_url":"https://doi.org/10.1177/1094342019847732","pdf_url":"https://journals.sagepub.com/doi/pdf/10.1177/1094342019847732","source":{"id":"https://openalex.org/S60606485","display_name":"The International Journal of High Performance Computing Applications","issn_l":"1094-3420","issn":["1094-3420","1741-2846"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The International Journal of High Performance Computing Applications","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G991631816","display_name":null,"funder_award_id":"20813/PI/18","funder_id":"https://openalex.org/F4320310087","funder_display_name":"Fundaci\u00f3n S\u00e9neca"}],"funders":[{"id":"https://openalex.org/F4320310087","display_name":"Fundaci\u00f3n S\u00e9neca","ror":"https://ror.org/03q68pf65"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2945562209.pdf","grobid_xml":"https://content.openalex.org/works/W2945562209.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W74826915","https://openalex.org/W1592950931","https://openalex.org/W1963723282","https://openalex.org/W1985588649","https://openalex.org/W1997676637","https://openalex.org/W2014654032","https://openalex.org/W2016047921","https://openalex.org/W2035216220","https://openalex.org/W2060110839","https://openalex.org/W2073041046","https://openalex.org/W2096553377","https://openalex.org/W2105269030","https://openalex.org/W2141119792","https://openalex.org/W2158534713","https://openalex.org/W2159427933","https://openalex.org/W2295952321","https://openalex.org/W2600072887","https://openalex.org/W2754773169","https://openalex.org/W2887848938","https://openalex.org/W2950680102"],"related_works":["https://openalex.org/W2020279179","https://openalex.org/W2503137108","https://openalex.org/W2119534391","https://openalex.org/W1966576946","https://openalex.org/W2950520577","https://openalex.org/W2023770367","https://openalex.org/W1554644772","https://openalex.org/W2003935582","https://openalex.org/W2494130044","https://openalex.org/W2062253548"],"abstract_inverted_index":{"Virtual":[0],"screening":[1],"(VS)":[2],"methods":[3],"aid":[4],"clinical":[5],"research":[6],"by":[7,74,123],"predicting":[8],"the":[9,23,26,29,39,66,82,92,99,120],"interaction":[10],"of":[11,19,25,31,41,48,76,81,85,101,113,127,135],"ligands":[12],"with":[13,22],"pharmacological":[14],"targets.":[15],"The":[16,110,132],"computational":[17,124],"requirements":[18],"VS,":[20],"along":[21],"size":[24],"databases,":[27],"propitiate":[28],"use":[30],"high-performance":[32],"computing.":[33],"METADOCK":[34,102],"is":[35,71,94],"a":[36,63],"tool":[37],"for":[38,68],"application":[40],"metaheuristics":[42,70,88],"to":[43,118,140],"VS":[44],"in":[45],"heterogeneous":[46],"clusters":[47],"computers":[49],"based":[50],"on":[51,79],"central":[52],"processing":[53,58],"unit":[54,59],"(CPU)":[55],"and":[56,103],"graphics":[57],"(GPU).":[60],"HYPERDOCK":[61,97,139],"represents":[62],"step":[64],"forward;":[65],"exploration":[67],"satisfactory":[69],"systematically":[72],"approached":[73],"means":[75],"hyperheuristics":[77],"working":[78],"top":[80],"metaheuristic":[83],"schema":[84],"METADOCK.":[86],"Multiple":[87],"are":[89],"explored,":[90],"so":[91],"process":[93],"computationally":[95],"demanding.":[96],"exploits":[98],"parallelism":[100,105,114,121],"includes":[104],"at":[106],"its":[107],"own":[108],"level.":[109],"different":[111],"levels":[112],"can":[115],"be":[116],"used":[117],"exploit":[119],"offered":[122],"systems":[125,137],"composed":[126],"multicore":[128],"CPU":[129],"+":[130],"multi-GPUs.":[131],"efficient":[133],"exploitation":[134],"these":[136],"enables":[138],"improve":[141],"ligand\u2013receptor":[142],"binding.":[143]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2026-03-02T08:37:19.008085","created_date":"2025-10-10T00:00:00"}
