{"id":"https://openalex.org/W2600072887","doi":"https://doi.org/10.1177/1094342017697471","title":"METADOCK: A parallel metaheuristic schema for virtual screening methods","display_name":"METADOCK: A parallel metaheuristic schema for virtual screening methods","publication_year":2017,"publication_date":"2017-03-26","ids":{"openalex":"https://openalex.org/W2600072887","doi":"https://doi.org/10.1177/1094342017697471","mag":"2600072887"},"language":"en","primary_location":{"id":"doi:10.1177/1094342017697471","is_oa":false,"landing_page_url":"https://doi.org/10.1177/1094342017697471","pdf_url":null,"source":{"id":"https://openalex.org/S60606485","display_name":"The International Journal of High Performance Computing Applications","issn_l":"1094-3420","issn":["1094-3420","1741-2846"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The International Journal of High Performance Computing Applications","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/10952/3085","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028232016","display_name":"Baldomero Imbern\u00f3n","orcid":"https://orcid.org/0000-0002-2758-8364"},"institutions":[{"id":"https://openalex.org/I68763199","display_name":"Universidad Cat\u00f3lica San Antonio de Murcia","ror":"https://ror.org/05b1rsv17","country_code":"ES","type":"education","lineage":["https://openalex.org/I68763199"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Baldomero Imbern\u00f3n","raw_affiliation_strings":["Bioinformatics and High Performance Computing Research Group (BIO-HPC), Universidad Cat\u00f3lica San Antonio of Murcia (UCAM), Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and High Performance Computing Research Group (BIO-HPC), Universidad Cat\u00f3lica San Antonio of Murcia (UCAM), Spain","institution_ids":["https://openalex.org/I68763199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088468258","display_name":"Jos\u00e9 M. Cecilia","orcid":"https://orcid.org/0000-0001-5648-214X"},"institutions":[{"id":"https://openalex.org/I68763199","display_name":"Universidad Cat\u00f3lica San Antonio de Murcia","ror":"https://ror.org/05b1rsv17","country_code":"ES","type":"education","lineage":["https://openalex.org/I68763199"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 M Cecilia","raw_affiliation_strings":["Bioinformatics and High Performance Computing Research Group (BIO-HPC), Universidad Cat\u00f3lica San Antonio of Murcia (UCAM), Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and High Performance Computing Research Group (BIO-HPC), Universidad Cat\u00f3lica San Antonio of Murcia (UCAM), Spain","institution_ids":["https://openalex.org/I68763199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037673215","display_name":"Horacio P\u00e9rez\u2010S\u00e1nchez","orcid":"https://orcid.org/0000-0003-4468-7898"},"institutions":[{"id":"https://openalex.org/I68763199","display_name":"Universidad Cat\u00f3lica San Antonio de Murcia","ror":"https://ror.org/05b1rsv17","country_code":"ES","type":"education","lineage":["https://openalex.org/I68763199"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Horacio P\u00e9rez-S\u00e1nchez","raw_affiliation_strings":["Bioinformatics and High Performance Computing Research Group (BIO-HPC), Universidad Cat\u00f3lica San Antonio of Murcia (UCAM), Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and High Performance Computing Research Group (BIO-HPC), Universidad Cat\u00f3lica San Antonio of Murcia (UCAM), Spain","institution_ids":["https://openalex.org/I68763199"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085561586","display_name":"Domingo Gim\u00e9nez","orcid":"https://orcid.org/0000-0003-4827-1320"},"institutions":[{"id":"https://openalex.org/I80180929","display_name":"Universidad de Murcia","ror":"https://ror.org/03p3aeb86","country_code":"ES","type":"education","lineage":["https://openalex.org/I80180929"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Domingo Gim\u00e9nez","raw_affiliation_strings":["Department of Computing and Systems, University of Murcia, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Computing and Systems, University of Murcia, Spain","institution_ids":["https://openalex.org/I80180929"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5028232016"],"corresponding_institution_ids":["https://openalex.org/I68763199"],"apc_list":null,"apc_paid":null,"fwci":5.6523,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.96519437,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"32","issue":"6","first_page":"789","last_page":"803"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metaheuristic","display_name":"Metaheuristic","score":0.7770131230354309},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7712679505348206},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.6424975395202637},{"id":"https://openalex.org/keywords/parameterized-complexity","display_name":"Parameterized complexity","score":0.5758910775184631},{"id":"https://openalex.org/keywords/workload","display_name":"Workload","score":0.47511419653892517},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.4616061747074127},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.4561369717121124},{"id":"https://openalex.org/keywords/schema","display_name":"Schema (genetic algorithms)","score":0.43729424476623535},{"id":"https://openalex.org/keywords/scheduling","display_name":"Scheduling (production processes)","score":0.43469446897506714},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3770105540752411},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.2950412631034851},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2837926745414734},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2447141408920288},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.17780372500419617},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.12838292121887207},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.12444701790809631}],"concepts":[{"id":"https://openalex.org/C109718341","wikidata":"https://www.wikidata.org/wiki/Q1385229","display_name":"Metaheuristic","level":2,"score":0.7770131230354309},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7712679505348206},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.6424975395202637},{"id":"https://openalex.org/C165464430","wikidata":"https://www.wikidata.org/wiki/Q1570441","display_name":"Parameterized complexity","level":2,"score":0.5758910775184631},{"id":"https://openalex.org/C2778476105","wikidata":"https://www.wikidata.org/wiki/Q628539","display_name":"Workload","level":2,"score":0.47511419653892517},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.4616061747074127},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.4561369717121124},{"id":"https://openalex.org/C52146309","wikidata":"https://www.wikidata.org/wiki/Q7431116","display_name":"Schema (genetic algorithms)","level":2,"score":0.43729424476623535},{"id":"https://openalex.org/C206729178","wikidata":"https://www.wikidata.org/wiki/Q2271896","display_name":"Scheduling (production processes)","level":2,"score":0.43469446897506714},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3770105540752411},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.2950412631034851},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2837926745414734},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2447141408920288},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.17780372500419617},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.12838292121887207},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.12444701790809631},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1177/1094342017697471","is_oa":false,"landing_page_url":"https://doi.org/10.1177/1094342017697471","pdf_url":null,"source":{"id":"https://openalex.org/S60606485","display_name":"The International Journal of High Performance Computing Applications","issn_l":"1094-3420","issn":["1094-3420","1741-2846"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The International Journal of High Performance Computing Applications","raw_type":"journal-article"},{"id":"pmh:oai:dnet:riucam______::3fb17b667a31db8714384c60b747f75f","is_oa":true,"landing_page_url":"http://hdl.handle.net/10952/3085","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:dnet:riucam______::3fb17b667a31db8714384c60b747f75f","is_oa":true,"landing_page_url":"http://hdl.handle.net/10952/3085","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.5299999713897705}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309480","display_name":"Nvidia","ror":"https://ror.org/03jdj4y14"},{"id":"https://openalex.org/F4320311699","display_name":"Manchester Metropolitan University","ror":"https://ror.org/02hstj355"},{"id":"https://openalex.org/F4320317579","display_name":"HiPEAC Network","ror":null},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320322069","display_name":"National Evidence-based Healthcare Collaborating Agency","ror":"https://ror.org/04f097438"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W16662180","https://openalex.org/W19471559","https://openalex.org/W74826915","https://openalex.org/W97681402","https://openalex.org/W1512801428","https://openalex.org/W1592950931","https://openalex.org/W1600301286","https://openalex.org/W1762731526","https://openalex.org/W1963723282","https://openalex.org/W1969017960","https://openalex.org/W1985588649","https://openalex.org/W1986240377","https://openalex.org/W1995089537","https://openalex.org/W2001368885","https://openalex.org/W2004617458","https://openalex.org/W2005817231","https://openalex.org/W2013085020","https://openalex.org/W2014654032","https://openalex.org/W2016047921","https://openalex.org/W2031390939","https://openalex.org/W2033528237","https://openalex.org/W2039568841","https://openalex.org/W2046609661","https://openalex.org/W2050273205","https://openalex.org/W2058985264","https://openalex.org/W2060110839","https://openalex.org/W2071828883","https://openalex.org/W2073041046","https://openalex.org/W2087594839","https://openalex.org/W2096553377","https://openalex.org/W2105269030","https://openalex.org/W2112101018","https://openalex.org/W2112213938","https://openalex.org/W2121082877","https://openalex.org/W2123262342","https://openalex.org/W2126716286","https://openalex.org/W2145126338","https://openalex.org/W2148948822","https://openalex.org/W2158534713","https://openalex.org/W2159427933","https://openalex.org/W2160205549","https://openalex.org/W2160916136","https://openalex.org/W2168497347","https://openalex.org/W2176516200","https://openalex.org/W2295952321","https://openalex.org/W2318478115","https://openalex.org/W2323020055","https://openalex.org/W2340076492","https://openalex.org/W4230781079","https://openalex.org/W4231878220","https://openalex.org/W4233935884"],"related_works":["https://openalex.org/W2051058708","https://openalex.org/W154868527","https://openalex.org/W1494268238","https://openalex.org/W1983207144","https://openalex.org/W2035216220","https://openalex.org/W2773493604","https://openalex.org/W2269591907","https://openalex.org/W2027065525","https://openalex.org/W2057846043","https://openalex.org/W2336040088"],"abstract_inverted_index":{"Virtual":[0],"screening":[1,158],"through":[2],"molecular":[3,64,121],"docking":[4,65],"can":[5,13],"be":[6,14],"translated":[7],"into":[8],"an":[9],"optimization":[10,87],"problem,":[11],"which":[12,113],"tackled":[15],"with":[16],"metaheuristic":[17,116],"methods.":[18],"The":[19,83],"interaction":[20],"between":[21],"two":[22],"chemical":[23],"compounds":[24],"(typically":[25],"a":[26,32,62,94,101,150],"protein,":[27],"enzyme":[28],"or":[29,35],"receptor,":[30],"and":[31,70,73,141],"small":[33],"molecule,":[34],"ligand)":[36],"is":[37],"calculated":[38],"by":[39,92,124],"using":[40],"highly":[41],"computationally":[42],"demanding":[43],"scoring":[44,126],"functions":[45,127],"that":[46],"are":[47],"computed":[48],"at":[49,89],"several":[50],"binding":[51],"spots":[52],"located":[53],"throughout":[54],"the":[55,86,125,136,139,142,146],"protein":[56],"surface.":[57],"This":[58],"paper":[59],"introduces":[60],"METADOCK,":[61],"novel":[63],"methodology":[66],"based":[67,79],"on":[68,80,160],"parameterized":[69],"parallel":[71],"metaheuristics":[72],"designed":[74],"to":[75,110],"leverage":[76],"heterogeneous":[77,81,111,163],"computers":[78],"architectures.":[82],"application":[84],"decides":[85],"technique":[88],"running":[90],"time":[91],"setting":[93],"configuration":[95],"schema.":[96],"Our":[97],"proposed":[98],"solution":[99,140],"finds":[100],"good":[102],"workload":[103],"balance":[104],"via":[105],"dynamic":[106],"assignment":[107],"of":[108,133,138,145,156],"jobs":[109,134],"resources":[112],"perform":[114],"independent":[115],"executions":[117],"when":[118],"computing":[119],"different":[120],"interactions":[122],"required":[123],"in":[128],"use.":[129],"A":[130],"cooperative":[131],"scheduling":[132],"optimizes":[135],"quality":[137],"overall":[143],"performance":[144],"simulation,":[147],"so":[148],"opening":[149],"new":[151],"path":[152],"for":[153],"further":[154],"developments":[155],"virtual":[157],"methods":[159],"high-performance":[161],"contemporary":[162],"platforms.":[164]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":12},{"year":2017,"cited_by_count":2}],"updated_date":"2026-03-07T16:01:11.037858","created_date":"2025-10-10T00:00:00"}
