{"id":"https://openalex.org/W2461189691","doi":"https://doi.org/10.1177/1094342016658110","title":"High-performance epistasis detection in quantitative trait GWAS","display_name":"High-performance epistasis detection in quantitative trait GWAS","publication_year":2016,"publication_date":"2016-07-12","ids":{"openalex":"https://openalex.org/W2461189691","doi":"https://doi.org/10.1177/1094342016658110","mag":"2461189691"},"language":"en","primary_location":{"id":"doi:10.1177/1094342016658110","is_oa":false,"landing_page_url":"https://doi.org/10.1177/1094342016658110","pdf_url":null,"source":{"id":"https://openalex.org/S60606485","display_name":"The International Journal of High Performance Computing Applications","issn_l":"1094-3420","issn":["1094-3420","1741-2846"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The International Journal of High Performance Computing Applications","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.osti.gov/servlets/purl/1544015","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071816450","display_name":"Nathan T. Weeks","orcid":"https://orcid.org/0000-0002-4085-6028"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Nathan T Weeks","raw_affiliation_strings":["Department of Mathematics, Iowa State University, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Iowa State University, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046033530","display_name":"Glenn R. Luecke","orcid":null},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Glenn R Luecke","raw_affiliation_strings":["Department of Mathematics, Iowa State University, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Iowa State University, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059451603","display_name":"Brandon M. Groth","orcid":null},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brandon M Groth","raw_affiliation_strings":["Department of Mathematics, Iowa State University, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Iowa State University, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039225362","display_name":"Marina Kraeva","orcid":null},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marina Kraeva","raw_affiliation_strings":["IT Services Academic Technologies, Iowa State University, USA"],"affiliations":[{"raw_affiliation_string":"IT Services Academic Technologies, Iowa State University, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052832321","display_name":"Li Ma","orcid":"https://orcid.org/0000-0002-0159-3296"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Li Ma","raw_affiliation_strings":["Department of Animal Science, Iowa State University, USA"],"affiliations":[{"raw_affiliation_string":"Department of Animal Science, Iowa State University, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063331370","display_name":"Luke Kramer","orcid":"https://orcid.org/0000-0001-7357-8899"},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Luke M Kramer","raw_affiliation_strings":["Department of Animal and Avian Sciences, University of Maryland, USA"],"affiliations":[{"raw_affiliation_string":"Department of Animal and Avian Sciences, University of Maryland, USA","institution_ids":["https://openalex.org/I66946132"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067290345","display_name":"James E. Koltes","orcid":"https://orcid.org/0000-0003-1897-5685"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"James E Koltes","raw_affiliation_strings":["Department of Animal Science, University of Arkansas, USA"],"affiliations":[{"raw_affiliation_string":"Department of Animal Science, University of Arkansas, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037000551","display_name":"James M. Reecy","orcid":"https://orcid.org/0000-0003-4602-0990"},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James M Reecy","raw_affiliation_strings":["Department of Animal and Avian Sciences, University of Maryland, USA"],"affiliations":[{"raw_affiliation_string":"Department of Animal and Avian Sciences, University of Maryland, USA","institution_ids":["https://openalex.org/I66946132"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5071816450"],"corresponding_institution_ids":["https://openalex.org/I173911158"],"apc_list":null,"apc_paid":null,"fwci":2.7036,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.90352256,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"32","issue":"3","first_page":"321","last_page":"336"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.983299970626831,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9765999913215637,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8166141510009766},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.8163011074066162},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.7710996866226196},{"id":"https://openalex.org/keywords/xeon-phi","display_name":"Xeon Phi","score":0.7692368626594543},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.6441171169281006},{"id":"https://openalex.org/keywords/partitioned-global-address-space","display_name":"Partitioned global address space","score":0.47529590129852295},{"id":"https://openalex.org/keywords/load-balancing","display_name":"Load balancing (electrical power)","score":0.4656639099121094},{"id":"https://openalex.org/keywords/genome-wide-association-study","display_name":"Genome-wide association study","score":0.423475980758667},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.3416483700275421},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1694505512714386},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.15960386395454407},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13115885853767395},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09124428033828735},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.09109553694725037}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8166141510009766},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.8163011074066162},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.7710996866226196},{"id":"https://openalex.org/C96972482","wikidata":"https://www.wikidata.org/wiki/Q1049168","display_name":"Xeon Phi","level":2,"score":0.7692368626594543},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.6441171169281006},{"id":"https://openalex.org/C60832428","wikidata":"https://www.wikidata.org/wiki/Q945818","display_name":"Partitioned global address space","level":3,"score":0.47529590129852295},{"id":"https://openalex.org/C138959212","wikidata":"https://www.wikidata.org/wiki/Q1806783","display_name":"Load balancing (electrical power)","level":3,"score":0.4656639099121094},{"id":"https://openalex.org/C106208931","wikidata":"https://www.wikidata.org/wiki/Q1098876","display_name":"Genome-wide association study","level":5,"score":0.423475980758667},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.3416483700275421},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1694505512714386},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.15960386395454407},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13115885853767395},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09124428033828735},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.09109553694725037},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1177/1094342016658110","is_oa":false,"landing_page_url":"https://doi.org/10.1177/1094342016658110","pdf_url":null,"source":{"id":"https://openalex.org/S60606485","display_name":"The International Journal of High Performance Computing Applications","issn_l":"1094-3420","issn":["1094-3420","1741-2846"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The International Journal of High Performance Computing Applications","raw_type":"journal-article"},{"id":"pmh:oai:osti.gov:1544015","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1544015","pdf_url":"https://www.osti.gov/servlets/purl/1544015","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:lib.dr.iastate.edu:ans_pubs-1448","is_oa":false,"landing_page_url":"https://lib.dr.iastate.edu/ans_pubs/448","pdf_url":null,"source":{"id":"https://openalex.org/S4377196104","display_name":"Iowa State University Digital Repository (Iowa State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173911158","host_organization_name":"Iowa State University","host_organization_lineage":["https://openalex.org/I173911158"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Animal Science Publications","raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:osti.gov:1544015","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1544015","pdf_url":"https://www.osti.gov/servlets/purl/1544015","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1683691965","display_name":null,"funder_award_id":"1229081","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3091778834","display_name":null,"funder_award_id":"1205413","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3944918260","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G425189044","display_name":null,"funder_award_id":"DE-AC02-05CH","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4345379830","display_name":null,"funder_award_id":"735191","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4565140552","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4841871747","display_name":null,"funder_award_id":"DE_AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5315912995","display_name":null,"funder_award_id":"11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5802748842","display_name":null,"funder_award_id":"DE-AC02-05CH112","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5921281487","display_name":null,"funder_award_id":"number","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6124298671","display_name":null,"funder_award_id":"0735191","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6330738325","display_name":null,"funder_award_id":"DE_AC02_05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6348972864","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6429026066","display_name":null,"funder_award_id":"DE-AC02-05CH112","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6693667033","display_name":null,"funder_award_id":"CNS 1229081","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6734632886","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320311090","funder_display_name":"Iowa State University"},{"id":"https://openalex.org/G694679094","display_name":null,"funder_award_id":"DBI-0735191","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7233692708","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7340683655","display_name":null,"funder_award_id":"E-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7406122311","display_name":null,"funder_award_id":"AC02-05CH1123","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7664691372","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G7825954517","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8414908677","display_name":null,"funder_award_id":"DE-AC0","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G897164627","display_name":null,"funder_award_id":"DE-AC02_05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320310344","display_name":"South Dakota State University","ror":"https://ror.org/015jmes13"},{"id":"https://openalex.org/F4320310620","display_name":"University of Texas at Austin","ror":"https://ror.org/00hj54h04"},{"id":"https://openalex.org/F4320311090","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320332414","display_name":"Department of Mechanical Engineering, University of Texas at Austin","ror":"https://ror.org/00hj54h04"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2461189691.pdf"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1507039213","https://openalex.org/W1983694168","https://openalex.org/W1990587696","https://openalex.org/W1997751006","https://openalex.org/W2058322567","https://openalex.org/W2090436138","https://openalex.org/W2104549677","https://openalex.org/W2120888506","https://openalex.org/W2156064982","https://openalex.org/W2162112335","https://openalex.org/W2184365323","https://openalex.org/W2295760680","https://openalex.org/W4237278029"],"related_works":["https://openalex.org/W2494227547","https://openalex.org/W2133695315","https://openalex.org/W2058965144","https://openalex.org/W947442053","https://openalex.org/W2481121049","https://openalex.org/W3127234594","https://openalex.org/W2610996097","https://openalex.org/W92289447","https://openalex.org/W2233281717","https://openalex.org/W2782761385"],"abstract_inverted_index":{"epiSNP":[0,77],"is":[1],"a":[2,69,127,135,153],"program":[3],"for":[4,78,165,196],"identifying":[5],"pairwise":[6],"single":[7],"nucleotide":[8],"polymorphism":[9],"(SNP)":[10],"interactions":[11],"(epistasis)":[12],"in":[13,26,68],"quantitative-trait":[14],"genome-wide":[15],"association":[16],"studies":[17],"(GWAS).":[18],"A":[19],"parallel":[20,83],"MPI":[21,181],"version":[22,157,176,182],"(EPISNPmpi)":[23],"was":[24],"created":[25],"2008":[27],"to":[28,53,65,86,111],"address":[29],"this":[30,168,197],"computationally":[31],"expensive":[32],"analysis":[33],"on":[34,119,140,146,183,199],"large":[35,90,128],"data":[36,59,91,130],"sets":[37,60],"with":[38,109,167,179],"many":[39],"quantitative":[40],"traits":[41],"and":[42,81,106,116],"SNP":[43],"markers.":[44],"However,":[45],"the":[46,96,120,160,174,180,184,191],"falling":[47],"cost":[48],"of":[49,56,72,162,194],"genotyping":[50],"has":[51],"led":[52],"an":[54],"explosion":[55],"large-scale":[57],"GWAS":[58,129],"that":[61,158,173],"challenge":[62],"EPISNPmpi\u2019s":[63],"ability":[64],"compute":[66],"results":[67],"reasonable":[70],"amount":[71],"time.":[73],"Therefore,":[74],"we":[75],"optimized":[76],"modern":[79],"multi-core":[80],"highly":[82],"many-core":[84],"processors":[85],"efficiently":[87],"handle":[88],"these":[89],"sets.":[92],"This":[93],"paper":[94],"describes":[95],"serial":[97],"optimizations,":[98],"dynamic":[99],"load":[100,114],"balancing":[101,115],"using":[102,143],"MPI-3":[103],"RMA":[104],"operations,":[105],"shared-memory":[107],"parallelization":[108],"OpenMP":[110],"further":[112],"enhance":[113],"allow":[117],"execution":[118],"Intel":[121],"Xeon":[122],"Phi":[123],"coprocessor":[124],"(MIC).":[125],"For":[126],"set,":[131],"our":[132],"optimizations":[133],"provided":[134],"38.43\u00d7":[136],"speedup":[137],"over":[138],"EPISNPmpi":[139],"126":[141],"nodes":[142],"2":[144],"MICs":[145],"TACC\u2019s":[147],"Stampede":[148],"Supercomputer.":[149],"We":[150,171],"also":[151],"describe":[152],"Coarray":[154,175],"Fortran":[155],"(CAF)":[156],"demonstrates":[159],"suitability":[161],"PGAS":[163],"languages":[164],"problems":[166],"computational":[169],"pattern.":[170],"show":[172],"performs":[177],"competitively":[178],"NERSC":[185],"Edison":[186,200],"Cray":[187],"XC30":[188],"supercomputer.":[189],"Finally,":[190],"performance":[192],"benefits":[193],"hyper-threading":[195],"application":[198],"(average":[201],"1.35\u00d7":[202],"speedup)":[203],"are":[204],"demonstrated.":[205]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-19T08:26:33.389920","created_date":"2025-10-10T00:00:00"}
