{"id":"https://openalex.org/W2342014266","doi":"https://doi.org/10.1177/1094342015594519","title":"Application performance analysis and efficient execution on systems with multi-core CPUs, GPUs and MICs: a case study with microscopy image analysis","display_name":"Application performance analysis and efficient execution on systems with multi-core CPUs, GPUs and MICs: a case study with microscopy image analysis","publication_year":2015,"publication_date":"2015-07-29","ids":{"openalex":"https://openalex.org/W2342014266","doi":"https://doi.org/10.1177/1094342015594519","mag":"2342014266","pmid":"https://pubmed.ncbi.nlm.nih.gov/28239253"},"language":"en","primary_location":{"id":"doi:10.1177/1094342015594519","is_oa":false,"landing_page_url":"https://doi.org/10.1177/1094342015594519","pdf_url":null,"source":{"id":"https://openalex.org/S60606485","display_name":"The International Journal of High Performance Computing Applications","issn_l":"1094-3420","issn":["1094-3420","1741-2846"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The International Journal of High Performance Computing Applications","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5319667","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076465098","display_name":"George Teodoro","orcid":"https://orcid.org/0000-0001-6289-3914"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"George Teodoro","raw_affiliation_strings":["Department of Computer Science, University of Bras\u00edlia, Bras\u00edlia, DF, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Bras\u00edlia, Bras\u00edlia, DF, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037383891","display_name":"Tahsin Kur\u00e7","orcid":"https://orcid.org/0000-0001-9237-4306"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tahsin Kurc","raw_affiliation_strings":["Department of Biomedical Informatics, Stony Brook University, Stony Brook, NY, USA","Scientific Data Group, Oak Ridge National Laboratory, Oak Ridge, TN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Stony Brook University, Stony Brook, NY, USA","institution_ids":["https://openalex.org/I59553526"]},{"raw_affiliation_string":"Scientific Data Group, Oak Ridge National Laboratory, Oak Ridge, TN, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111010764","display_name":"Guilherme Andrade","orcid":"https://orcid.org/0000-0002-4551-5361"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Guilherme Andrade","raw_affiliation_strings":["Department of Computer Science, Federal University of Minas Gerais, Belo Horizonte, MG, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Federal University of Minas Gerais, Belo Horizonte, MG, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066949209","display_name":"Jun Kong","orcid":"https://orcid.org/0000-0001-8757-8339"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jun Kong","raw_affiliation_strings":["Department of Biomedical Informatics, Emory University, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Emory University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018179311","display_name":"Renato Ferreira","orcid":"https://orcid.org/0000-0002-4372-8996"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Renato Ferreira","raw_affiliation_strings":["Department of Computer Science, Federal University of Minas Gerais, Belo Horizonte, MG, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Federal University of Minas Gerais, Belo Horizonte, MG, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072946826","display_name":"Joel Saltz","orcid":"https://orcid.org/0000-0002-3451-2165"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joel Saltz","raw_affiliation_strings":["Department of Biomedical Informatics, Stony Brook University, Stony Brook, NY, USA","Scientific Data Group, Oak Ridge National Laboratory, Oak Ridge, TN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Stony Brook University, Stony Brook, NY, USA","institution_ids":["https://openalex.org/I59553526"]},{"raw_affiliation_string":"Scientific Data Group, Oak Ridge National Laboratory, Oak Ridge, TN, USA","institution_ids":["https://openalex.org/I1289243028"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5076465098"],"corresponding_institution_ids":["https://openalex.org/I150729083"],"apc_list":null,"apc_paid":null,"fwci":3.4031,"has_fulltext":false,"cited_by_count":24,"citation_normalized_percentile":{"value":0.93080944,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":93,"max":99},"biblio":{"volume":"31","issue":"1","first_page":"32","last_page":"51"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11992","display_name":"CCD and CMOS Imaging Sensors","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11992","display_name":"CCD and CMOS Imaging Sensors","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10502","display_name":"Advanced Memory and Neural Computing","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8632367849349976},{"id":"https://openalex.org/keywords/xeon","display_name":"Xeon","score":0.758872389793396},{"id":"https://openalex.org/keywords/xeon-phi","display_name":"Xeon Phi","score":0.7422648668289185},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.6843594312667847},{"id":"https://openalex.org/keywords/scheduling","display_name":"Scheduling (production processes)","score":0.5548202991485596},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5429707169532776},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.516326367855072},{"id":"https://openalex.org/keywords/performance-improvement","display_name":"Performance improvement","score":0.515140175819397},{"id":"https://openalex.org/keywords/multi-core-processor","display_name":"Multi-core processor","score":0.49040770530700684},{"id":"https://openalex.org/keywords/data-access","display_name":"Data access","score":0.4383270740509033},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.357852578163147},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.13466894626617432},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.11185777187347412}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8632367849349976},{"id":"https://openalex.org/C145108525","wikidata":"https://www.wikidata.org/wiki/Q656154","display_name":"Xeon","level":2,"score":0.758872389793396},{"id":"https://openalex.org/C96972482","wikidata":"https://www.wikidata.org/wiki/Q1049168","display_name":"Xeon Phi","level":2,"score":0.7422648668289185},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.6843594312667847},{"id":"https://openalex.org/C206729178","wikidata":"https://www.wikidata.org/wiki/Q2271896","display_name":"Scheduling (production processes)","level":2,"score":0.5548202991485596},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5429707169532776},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.516326367855072},{"id":"https://openalex.org/C2778915421","wikidata":"https://www.wikidata.org/wiki/Q3643177","display_name":"Performance improvement","level":2,"score":0.515140175819397},{"id":"https://openalex.org/C78766204","wikidata":"https://www.wikidata.org/wiki/Q555032","display_name":"Multi-core processor","level":2,"score":0.49040770530700684},{"id":"https://openalex.org/C47487241","wikidata":"https://www.wikidata.org/wiki/Q5227230","display_name":"Data access","level":2,"score":0.4383270740509033},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.357852578163147},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.13466894626617432},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.11185777187347412},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1177/1094342015594519","is_oa":false,"landing_page_url":"https://doi.org/10.1177/1094342015594519","pdf_url":null,"source":{"id":"https://openalex.org/S60606485","display_name":"The International Journal of High Performance Computing Applications","issn_l":"1094-3420","issn":["1094-3420","1741-2846"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The International Journal of High Performance Computing Applications","raw_type":"journal-article"},{"id":"pmid:28239253","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28239253","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The international journal of high performance computing applications","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5319667","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5319667","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Int J High Perform Comput Appl","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:5319667","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5319667","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Int J High Perform Comput Appl","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7","score":0.6100000143051147}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":48,"referenced_works":["https://openalex.org/W190927549","https://openalex.org/W299073999","https://openalex.org/W1487635616","https://openalex.org/W1502558273","https://openalex.org/W1597336200","https://openalex.org/W1966899997","https://openalex.org/W1986022261","https://openalex.org/W1994995855","https://openalex.org/W1998138403","https://openalex.org/W2002555321","https://openalex.org/W2003987120","https://openalex.org/W2011804442","https://openalex.org/W2018642708","https://openalex.org/W2032613563","https://openalex.org/W2040285774","https://openalex.org/W2044213522","https://openalex.org/W2053803547","https://openalex.org/W2065392434","https://openalex.org/W2067636775","https://openalex.org/W2073943895","https://openalex.org/W2088658319","https://openalex.org/W2090212574","https://openalex.org/W2092571383","https://openalex.org/W2095911025","https://openalex.org/W2104008467","https://openalex.org/W2109426995","https://openalex.org/W2110404638","https://openalex.org/W2112340065","https://openalex.org/W2113933145","https://openalex.org/W2121508706","https://openalex.org/W2129817042","https://openalex.org/W2133889665","https://openalex.org/W2137086253","https://openalex.org/W2145494871","https://openalex.org/W2146492971","https://openalex.org/W2150476673","https://openalex.org/W2153375074","https://openalex.org/W2156023062","https://openalex.org/W2157840858","https://openalex.org/W2169278316","https://openalex.org/W2170996201","https://openalex.org/W2173213060","https://openalex.org/W2269751313","https://openalex.org/W2607189868","https://openalex.org/W3187688612","https://openalex.org/W3210232381","https://openalex.org/W4248655967","https://openalex.org/W4256084543"],"related_works":["https://openalex.org/W2981664121","https://openalex.org/W3118514815","https://openalex.org/W2170268965","https://openalex.org/W2266989290","https://openalex.org/W2077672232","https://openalex.org/W2205865923","https://openalex.org/W3012536488","https://openalex.org/W2109964611","https://openalex.org/W3175030460","https://openalex.org/W2575711770"],"abstract_inverted_index":{"We":[0,24,38,123],"carry":[1],"out":[2],"a":[3,19,64,92,97],"comparative":[4],"performance":[5,28,42,69,141],"study":[6],"of":[7,29,35,46,58,70,80,112,116],"multi-core":[8],"CPUs,":[9],"GPUs":[10,99],"and":[11,49,55],"Intel":[12],"Xeon":[13],"Phi":[14],"(Many":[15],"Integrated":[16],"Core-MIC)":[17],"with":[18,43,72,82],"microscopy":[20],"image":[21],"analysis":[22],"application.":[23,37],"experimentally":[25],"evaluate":[26],"the":[27,36,40,44,59,68,75,113,117],"computing":[30,47],"devices":[31,48],"on":[32,91,96],"core":[33],"operations":[34,71,81,106],"correlate":[39],"observed":[41],"characteristics":[45],"data":[50,84,109,121],"access":[51,85,108],"patterns,":[52],"computation":[53],"complexities,":[54],"parallelization":[56],"forms":[57],"operations.":[60],"The":[61,78],"results":[62],"show":[63],"significant":[65],"variability":[66],"in":[67,132,146],"respect":[73],"to":[74,143],"device":[76],"used.":[77],"performances":[79],"regular":[83],"are":[86,100],"comparable":[87],"or":[88],"sometimes":[89],"better":[90],"MIC":[93,118],"than":[94,103],"that":[95,107,129],"GPU.":[98],"more":[101],"efficient":[102],"MICs":[104],"for":[105,119],"irregularly,":[110],"because":[111],"lower":[114],"bandwidth":[115],"random":[120],"accesses.":[122],"propose":[124],"new":[125],"performance-aware":[126],"scheduling":[127,136],"strategies":[128,137,145],"consider":[130],"variabilities":[131],"operation":[133],"speedups.":[134],"Our":[135],"significantly":[138],"improve":[139],"application":[140],"compared":[142],"classic":[144],"hybrid":[147],"configurations.":[148]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
