{"id":"https://openalex.org/W2015399276","doi":"https://doi.org/10.1177/1094342009350469","title":"End-To-End Cache System for Grid Computing: Design and Efficiency Analysis of a High-Throughput Bioinformatic Docking Application","display_name":"End-To-End Cache System for Grid Computing: Design and Efficiency Analysis of a High-Throughput Bioinformatic Docking Application","publication_year":2009,"publication_date":"2009-11-02","ids":{"openalex":"https://openalex.org/W2015399276","doi":"https://doi.org/10.1177/1094342009350469","mag":"2015399276"},"language":"en","primary_location":{"id":"doi:10.1177/1094342009350469","is_oa":false,"landing_page_url":"https://doi.org/10.1177/1094342009350469","pdf_url":null,"source":{"id":"https://openalex.org/S60606485","display_name":"The International Journal of High Performance Computing Applications","issn_l":"1094-3420","issn":["1094-3420","1741-2846"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The International Journal of High Performance Computing Applications","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005566175","display_name":"Jos\u00e9 Ignacio Garz\u00f3n","orcid":null},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Jose Ignacio Garzon","raw_affiliation_strings":["CIB-CSIC. RAMIRO DE MAEZTU 9, MADRID 28040, SPAIN,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIB-CSIC. RAMIRO DE MAEZTU 9, MADRID 28040, SPAIN,","institution_ids":["https://openalex.org/I134820265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058545013","display_name":"Eduardo Huedo","orcid":"https://orcid.org/0000-0002-2227-2491"},"institutions":[{"id":"https://openalex.org/I4210117526","display_name":"Unidades Centrales Cient\u00edfico-T\u00e9cnicas","ror":"https://ror.org/01wdt4y78","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210117526","https://openalex.org/I4387152914"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Eduardo Huedo","raw_affiliation_strings":["FACULTAD DE INFORMATICA, UCM. PROF. JOSE GARCIA SANTESMASES S/N, MADRID 28040, SPAIN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"FACULTAD DE INFORMATICA, UCM. PROF. JOSE GARCIA SANTESMASES S/N, MADRID 28040, SPAIN","institution_ids":["https://openalex.org/I4210117526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068703026","display_name":"Rub\u00e9n Montero","orcid":"https://orcid.org/0000-0003-2591-1719"},"institutions":[{"id":"https://openalex.org/I4210117526","display_name":"Unidades Centrales Cient\u00edfico-T\u00e9cnicas","ror":"https://ror.org/01wdt4y78","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210117526","https://openalex.org/I4387152914"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ruben Santiago Montero","raw_affiliation_strings":["FACULTAD DE INFORMATICA, UCM. PROF. JOSE GARCIA SANTESMASES S/N, MADRID 28040, SPAIN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"FACULTAD DE INFORMATICA, UCM. PROF. JOSE GARCIA SANTESMASES S/N, MADRID 28040, SPAIN","institution_ids":["https://openalex.org/I4210117526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008797826","display_name":"Ignacio M. Ll\u00f3rente","orcid":"https://orcid.org/0000-0001-6230-8180"},"institutions":[{"id":"https://openalex.org/I4210117526","display_name":"Unidades Centrales Cient\u00edfico-T\u00e9cnicas","ror":"https://ror.org/01wdt4y78","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210117526","https://openalex.org/I4387152914"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ignacio Martin Llorente","raw_affiliation_strings":["FACULTAD DE INFORMATICA, UCM. PROF. JOSE GARCIA SANTESMASES S/N, MADRID 28040, SPAIN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"FACULTAD DE INFORMATICA, UCM. PROF. JOSE GARCIA SANTESMASES S/N, MADRID 28040, SPAIN","institution_ids":["https://openalex.org/I4210117526"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016204870","display_name":"Pablo Chac\u00f3n","orcid":"https://orcid.org/0000-0002-3168-4826"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Pablo Chacon","raw_affiliation_strings":["CIB-CSIC. RAMIRO DE MAEZTU 9, MADRID 28040, SPAIN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIB-CSIC. RAMIRO DE MAEZTU 9, MADRID 28040, SPAIN","institution_ids":["https://openalex.org/I134820265"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5005566175"],"corresponding_institution_ids":["https://openalex.org/I134820265"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.11766871,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"24","issue":"3","first_page":"243","last_page":"264"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.974399983882904,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8638902902603149},{"id":"https://openalex.org/keywords/cache","display_name":"Cache","score":0.8609640598297119},{"id":"https://openalex.org/keywords/cache-algorithms","display_name":"Cache algorithms","score":0.6882476806640625},{"id":"https://openalex.org/keywords/cache-coloring","display_name":"Cache coloring","score":0.658685564994812},{"id":"https://openalex.org/keywords/page-cache","display_name":"Page cache","score":0.5846875905990601},{"id":"https://openalex.org/keywords/cache-invalidation","display_name":"Cache invalidation","score":0.5751359462738037},{"id":"https://openalex.org/keywords/grid-computing","display_name":"Grid computing","score":0.5723904371261597},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.5669604539871216},{"id":"https://openalex.org/keywords/cache-pollution","display_name":"Cache pollution","score":0.5656980276107788},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.5374349355697632},{"id":"https://openalex.org/keywords/cache-oblivious-algorithm","display_name":"Cache-oblivious algorithm","score":0.5253661870956421},{"id":"https://openalex.org/keywords/smart-cache","display_name":"Smart Cache","score":0.5080990791320801},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.4689449965953827},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.44729241728782654},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4387347102165222},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.34320521354675293},{"id":"https://openalex.org/keywords/cpu-cache","display_name":"CPU cache","score":0.3253398835659027}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8638902902603149},{"id":"https://openalex.org/C115537543","wikidata":"https://www.wikidata.org/wiki/Q165596","display_name":"Cache","level":2,"score":0.8609640598297119},{"id":"https://openalex.org/C38556500","wikidata":"https://www.wikidata.org/wiki/Q13404475","display_name":"Cache algorithms","level":4,"score":0.6882476806640625},{"id":"https://openalex.org/C201148951","wikidata":"https://www.wikidata.org/wiki/Q5015976","display_name":"Cache coloring","level":4,"score":0.658685564994812},{"id":"https://openalex.org/C36340418","wikidata":"https://www.wikidata.org/wiki/Q7124288","display_name":"Page cache","level":5,"score":0.5846875905990601},{"id":"https://openalex.org/C25536678","wikidata":"https://www.wikidata.org/wiki/Q5015977","display_name":"Cache invalidation","level":5,"score":0.5751359462738037},{"id":"https://openalex.org/C70429105","wikidata":"https://www.wikidata.org/wiki/Q249999","display_name":"Grid computing","level":3,"score":0.5723904371261597},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.5669604539871216},{"id":"https://openalex.org/C113166858","wikidata":"https://www.wikidata.org/wiki/Q5015981","display_name":"Cache pollution","level":5,"score":0.5656980276107788},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.5374349355697632},{"id":"https://openalex.org/C59687516","wikidata":"https://www.wikidata.org/wiki/Q5015938","display_name":"Cache-oblivious algorithm","level":5,"score":0.5253661870956421},{"id":"https://openalex.org/C167713795","wikidata":"https://www.wikidata.org/wiki/Q352090","display_name":"Smart Cache","level":5,"score":0.5080990791320801},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.4689449965953827},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.44729241728782654},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4387347102165222},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.34320521354675293},{"id":"https://openalex.org/C189783530","wikidata":"https://www.wikidata.org/wiki/Q352090","display_name":"CPU cache","level":3,"score":0.3253398835659027},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1177/1094342009350469","is_oa":false,"landing_page_url":"https://doi.org/10.1177/1094342009350469","pdf_url":null,"source":{"id":"https://openalex.org/S60606485","display_name":"The International Journal of High Performance Computing Applications","issn_l":"1094-3420","issn":["1094-3420","1741-2846"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The International Journal of High Performance Computing Applications","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W26289711","https://openalex.org/W1487903418","https://openalex.org/W1537072175","https://openalex.org/W1597892502","https://openalex.org/W1598698901","https://openalex.org/W1974949232","https://openalex.org/W1989983666","https://openalex.org/W1991204070","https://openalex.org/W2000383223","https://openalex.org/W2001372508","https://openalex.org/W2006062966","https://openalex.org/W2014744153","https://openalex.org/W2032930624","https://openalex.org/W2069542456","https://openalex.org/W2091257550","https://openalex.org/W2095157453","https://openalex.org/W2099907934","https://openalex.org/W2105609237","https://openalex.org/W2107752092","https://openalex.org/W2109738489","https://openalex.org/W2110585060","https://openalex.org/W2111971626","https://openalex.org/W2111996486","https://openalex.org/W2112087820","https://openalex.org/W2114012459","https://openalex.org/W2123449096","https://openalex.org/W2126436545","https://openalex.org/W2133712572","https://openalex.org/W2167834834","https://openalex.org/W2177551934","https://openalex.org/W2912202162","https://openalex.org/W3110378792","https://openalex.org/W3196112465","https://openalex.org/W4241399133","https://openalex.org/W4254093784"],"related_works":["https://openalex.org/W2098406302","https://openalex.org/W2535115842","https://openalex.org/W2546991807","https://openalex.org/W2734782074","https://openalex.org/W2020176098","https://openalex.org/W2076114130","https://openalex.org/W2116323004","https://openalex.org/W2121191383","https://openalex.org/W1584415117","https://openalex.org/W4252570104"],"abstract_inverted_index":{"Cache":[0],"techniques":[1],"are":[2],"an":[3,42],"efficient":[4],"tool":[5],"to":[6,19,111],"reduce":[7],"latency":[8],"times":[9],"in":[10,58,67,98],"transfer":[11],"operations":[12],"through":[13],"Grid":[14,24,35,60,69,72],"systems.":[15],"Although":[16],"different":[17],"approximations":[18],"introduce":[20],"cache":[21,44,53,91,122,138],"facilities":[22],"into":[23],"computing":[25,77],"have":[26],"already":[27],"been":[28],"studied,":[29],"they":[30],"require":[31],"intrusive":[32],"modifications":[33],"of":[34,64,74,95,101,107,119,147],"software":[36,61,66],"and":[37,141],"hardware.":[38],"Here,":[39],"we":[40,124],"propose":[41],"end-to-end":[43,121],"system":[45,54],"that":[46,79],"is":[47],"implemented":[48],"over":[49],"scheduling":[50],"services.":[51],"This":[52],"requires":[55],"neither":[56],"changes":[57],"the":[59,68,81,99,112,117],"nor":[62],"introduction":[63],"new":[65,129],"resources.":[70,114],"Parallel":[71],"adaptation":[73],"many":[75],"high-throughput":[76,148],"applications":[78],"use":[80],"same":[82,113],"data":[83,97],"intensively":[84],"could":[85],"enjoy":[86],"great":[87],"benefits":[88],"from":[89],"our":[90,120,137],"system.":[92],"The":[93,133],"maintenance":[94],"cacheable":[96],"resources":[100],"already-executed":[102],"tasks":[103,109],"allows":[104],"faster":[105],"executions":[106],"future":[108],"assigned":[110],"To":[115],"analyze":[116],"performance":[118],"system,":[123],"tested":[125],"it":[126],"with":[127],"a":[128],"protein\u2014protein":[130],"docking":[131],"application.":[132,149],"obtained":[134],"results":[135],"confirm":[136],"system\u2019s":[139],"robustness":[140],"efficiency":[142],"gain":[143],"for":[144],"this":[145],"kind":[146]},"counts_by_year":[{"year":2013,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
