{"id":"https://openalex.org/W2166777378","doi":"https://doi.org/10.1177/1094342004041290","title":"The Virtual Instrument: Support for Grid-Enabled Mcell Simulations","display_name":"The Virtual Instrument: Support for Grid-Enabled Mcell Simulations","publication_year":2004,"publication_date":"2004-02-01","ids":{"openalex":"https://openalex.org/W2166777378","doi":"https://doi.org/10.1177/1094342004041290","mag":"2166777378","pmid":"https://pubmed.ncbi.nlm.nih.gov/20689618"},"language":"en","primary_location":{"id":"doi:10.1177/1094342004041290","is_oa":false,"landing_page_url":"https://doi.org/10.1177/1094342004041290","pdf_url":null,"source":{"id":"https://openalex.org/S60606485","display_name":"The International Journal of High Performance Computing Applications","issn_l":"1094-3420","issn":["1094-3420","1741-2846"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The International Journal of High Performance Computing Applications","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022674890","display_name":"Henri Casanova","orcid":"https://orcid.org/0000-0001-6310-0365"},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Henri Casanova","raw_affiliation_strings":["SAN DIEGO SUPERCOMPUTER CENTER AND DEPT. OF COMPUTER SCIENCE AND ENGINEERING, UNIVERSITY OF CALIFORNIA, SAN DIEGO"],"affiliations":[{"raw_affiliation_string":"SAN DIEGO SUPERCOMPUTER CENTER AND DEPT. OF COMPUTER SCIENCE AND ENGINEERING, UNIVERSITY OF CALIFORNIA, SAN DIEGO","institution_ids":["https://openalex.org/I181653535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046731611","display_name":"Francine Berman","orcid":"https://orcid.org/0000-0001-8505-1752"},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Francine Berman","raw_affiliation_strings":["SAN DIEGO SUPERCOMPUTER CENTER AND DEPT. OF COMPUTER SCIENCE AND ENGINEERING, UNIVERSITY OF CALIFORNIA, SAN DIEGO"],"affiliations":[{"raw_affiliation_string":"SAN DIEGO SUPERCOMPUTER CENTER AND DEPT. OF COMPUTER SCIENCE AND ENGINEERING, UNIVERSITY OF CALIFORNIA, SAN DIEGO","institution_ids":["https://openalex.org/I181653535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027860030","display_name":"Thomas M. Bartol","orcid":"https://orcid.org/0009-0002-2598-0052"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Thomas Bartol","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061762260","display_name":"Erhan G\u00f6k\u00e7ay","orcid":"https://orcid.org/0000-0002-4220-199X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Erhan Gokcay","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033003852","display_name":"Terry Sejnowski","orcid":null},"institutions":[{"id":"https://openalex.org/I1307098950","display_name":"Salk Institute for Biological Studies","ror":"https://ror.org/03xez1567","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1307098950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Terry Sejnowski","raw_affiliation_strings":["COMPUTATIONAL NEUROBIOLOGY LABORATORY, SALK INSTITUTE"],"affiliations":[{"raw_affiliation_string":"COMPUTATIONAL NEUROBIOLOGY LABORATORY, SALK INSTITUTE","institution_ids":["https://openalex.org/I1307098950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043009421","display_name":"Adam Birnbaum","orcid":null},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Birnbaum","raw_affiliation_strings":["SAN DIEGO SUPERCOMPUTER CENTER"],"affiliations":[{"raw_affiliation_string":"SAN DIEGO SUPERCOMPUTER CENTER","institution_ids":["https://openalex.org/I181653535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075517045","display_name":"Jack Dongarra","orcid":"https://orcid.org/0000-0003-3247-1782"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jack Dongarra","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101676213","display_name":"Michelle Miller","orcid":"https://orcid.org/0000-0001-8812-921X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Michelle Miller","raw_affiliation_strings":["DEPT. OF COMPUTER SCIENCE, UNIVERSITY OF TENNESSEE, KNOXVILLE"],"affiliations":[{"raw_affiliation_string":"DEPT. OF COMPUTER SCIENCE, UNIVERSITY OF TENNESSEE, KNOXVILLE","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051156147","display_name":"Mark H. Ellisman","orcid":"https://orcid.org/0000-0001-8893-8455"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mark Ellisman","raw_affiliation_strings":["NATIONAL CENTER FOR MICROSCOPY AND IMAGING RESEARCH, UNIVERSITY OF CALIFORNIA, SAN DIEGO"],"affiliations":[{"raw_affiliation_string":"NATIONAL CENTER FOR MICROSCOPY AND IMAGING RESEARCH, UNIVERSITY OF CALIFORNIA, SAN DIEGO","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018888500","display_name":"Marcio Faerman","orcid":"https://orcid.org/0000-0003-4838-8692"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marcio Faerman","raw_affiliation_strings":["DEPT. OF COMPUTER SCIENCE AND ENGINEERING, UNIVERSITY OF CALIFORNIA, SAN DIEGO"],"affiliations":[{"raw_affiliation_string":"DEPT. OF COMPUTER SCIENCE AND ENGINEERING, UNIVERSITY OF CALIFORNIA, SAN DIEGO","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039746809","display_name":"Graziano Obertelli","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Graziano Obertelli","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075011123","display_name":"Rich Wolski","orcid":"https://orcid.org/0000-0003-3722-473X"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rich Wolski","raw_affiliation_strings":["DEPT. OF COMPUTER SCIENCE, UNIVERSITY OF CALIFORNIA, SANTA BARBARA"],"affiliations":[{"raw_affiliation_string":"DEPT. OF COMPUTER SCIENCE, UNIVERSITY OF CALIFORNIA, SANTA BARBARA","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090514346","display_name":"Stuart R. Pomerantz","orcid":"https://orcid.org/0000-0001-9588-4846"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stuart Pomerantz","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5007448715","display_name":"Joel R. Stiles","orcid":null},"institutions":[{"id":"https://openalex.org/I35765314","display_name":"Pittsburgh Supercomputing Center","ror":"https://ror.org/04tac1482","country_code":"US","type":"facility","lineage":["https://openalex.org/I35765314"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joel Stiles","raw_affiliation_strings":["PITTSBURGH SUPERCOMPUTER CENTER"],"affiliations":[{"raw_affiliation_string":"PITTSBURGH SUPERCOMPUTER CENTER","institution_ids":["https://openalex.org/I35765314"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5022674890"],"corresponding_institution_ids":["https://openalex.org/I181653535"],"apc_list":null,"apc_paid":null,"fwci":1.0086,"has_fulltext":false,"cited_by_count":31,"citation_normalized_percentile":{"value":0.82836208,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"18","issue":"1","first_page":"3","last_page":"17"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/testbed","display_name":"Testbed","score":0.8592195510864258},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7817237377166748},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.727083146572113},{"id":"https://openalex.org/keywords/interactivity","display_name":"Interactivity","score":0.6338249444961548},{"id":"https://openalex.org/keywords/grid-computing","display_name":"Grid computing","score":0.6090242266654968},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.509292721748352},{"id":"https://openalex.org/keywords/scheduling","display_name":"Scheduling (production processes)","score":0.5050554871559143},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.47389712929725647},{"id":"https://openalex.org/keywords/e-science","display_name":"e-Science","score":0.4548533260822296},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4324495792388916},{"id":"https://openalex.org/keywords/virtual-machine","display_name":"Virtual machine","score":0.42786169052124023},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.40136492252349854},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.3602901101112366},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.22232067584991455},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.13411074876785278},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10753363370895386}],"concepts":[{"id":"https://openalex.org/C31395832","wikidata":"https://www.wikidata.org/wiki/Q1318674","display_name":"Testbed","level":2,"score":0.8592195510864258},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7817237377166748},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.727083146572113},{"id":"https://openalex.org/C144430266","wikidata":"https://www.wikidata.org/wiki/Q839721","display_name":"Interactivity","level":2,"score":0.6338249444961548},{"id":"https://openalex.org/C70429105","wikidata":"https://www.wikidata.org/wiki/Q249999","display_name":"Grid computing","level":3,"score":0.6090242266654968},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.509292721748352},{"id":"https://openalex.org/C206729178","wikidata":"https://www.wikidata.org/wiki/Q2271896","display_name":"Scheduling (production processes)","level":2,"score":0.5050554871559143},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.47389712929725647},{"id":"https://openalex.org/C517757529","wikidata":"https://www.wikidata.org/wiki/Q1273268","display_name":"e-Science","level":3,"score":0.4548533260822296},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4324495792388916},{"id":"https://openalex.org/C25344961","wikidata":"https://www.wikidata.org/wiki/Q192726","display_name":"Virtual machine","level":2,"score":0.42786169052124023},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.40136492252349854},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.3602901101112366},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.22232067584991455},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.13411074876785278},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10753363370895386},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1177/1094342004041290","is_oa":false,"landing_page_url":"https://doi.org/10.1177/1094342004041290","pdf_url":null,"source":{"id":"https://openalex.org/S60606485","display_name":"The International Journal of High Performance Computing Applications","issn_l":"1094-3420","issn":["1094-3420","1741-2846"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The International Journal of High Performance Computing Applications","raw_type":"journal-article"},{"id":"pmid:20689618","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20689618","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The international journal of high performance computing applications","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.164.3095","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.164.3095","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://papers.cnl.salk.edu/PDFs/The%20Virtual%20Instrument_%20Support%20for%20Grid-Enabled%20MCell%20Simulations%202004-3748.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2304371","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2916200","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.5199999809265137,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332603","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":60,"referenced_works":["https://openalex.org/W1884086","https://openalex.org/W74322794","https://openalex.org/W74971858","https://openalex.org/W656531464","https://openalex.org/W1488061622","https://openalex.org/W1489252188","https://openalex.org/W1492040731","https://openalex.org/W1492522106","https://openalex.org/W1498674203","https://openalex.org/W1514217898","https://openalex.org/W1549518189","https://openalex.org/W1581446642","https://openalex.org/W1597154064","https://openalex.org/W1819660368","https://openalex.org/W1898830902","https://openalex.org/W1923643168","https://openalex.org/W1943674727","https://openalex.org/W1968526517","https://openalex.org/W1969524198","https://openalex.org/W1977153665","https://openalex.org/W1992178984","https://openalex.org/W2006312525","https://openalex.org/W2006523031","https://openalex.org/W2010268137","https://openalex.org/W2016219012","https://openalex.org/W2018867131","https://openalex.org/W2024048296","https://openalex.org/W2025828073","https://openalex.org/W2045182523","https://openalex.org/W2057298723","https://openalex.org/W2057392949","https://openalex.org/W2071075503","https://openalex.org/W2071203884","https://openalex.org/W2077783617","https://openalex.org/W2086400577","https://openalex.org/W2091257550","https://openalex.org/W2094186309","https://openalex.org/W2097863660","https://openalex.org/W2103440606","https://openalex.org/W2111374036","https://openalex.org/W2117540160","https://openalex.org/W2117567886","https://openalex.org/W2120961828","https://openalex.org/W2126831426","https://openalex.org/W2142590813","https://openalex.org/W2146438496","https://openalex.org/W2147740236","https://openalex.org/W2154010459","https://openalex.org/W2155925515","https://openalex.org/W2163479342","https://openalex.org/W2163488242","https://openalex.org/W2164230281","https://openalex.org/W2164286031","https://openalex.org/W2166777378","https://openalex.org/W2187867568","https://openalex.org/W2396699058","https://openalex.org/W2439240014","https://openalex.org/W2911607583","https://openalex.org/W4235381807","https://openalex.org/W6600077372"],"related_works":["https://openalex.org/W2081453257","https://openalex.org/W2135747230","https://openalex.org/W1941357482","https://openalex.org/W2618482181","https://openalex.org/W2674586960","https://openalex.org/W2535148927","https://openalex.org/W2139772441","https://openalex.org/W2067473969","https://openalex.org/W1552442813","https://openalex.org/W166945183"],"abstract_inverted_index":{"Ensembles":[0],"of":[1,54,75,131,139],"widely":[2],"distributed,":[3],"heterogeneous":[4],"resources,":[5],"or":[6],"Grids,":[7],"have":[8],"emerged":[9],"as":[10],"popular":[11],"platforms":[12],"for":[13,65,88],"large-scale":[14],"scientific":[15,42,89,97],"applications.":[16],"In":[17,118],"this":[18,119],"paper":[19],"we":[20,121],"present":[21],"the":[22,51,63,123,137,155],"Virtual":[23,124],"Instrument":[24,125],"project,":[25],"which":[26],"provides":[27,62],"an":[28],"integrated":[29],"application":[30,144],"execution":[31],"environment":[32],"that":[33,85],"enables":[34],"end-users":[35],"to":[36,94,106,114],"run":[37],"and":[38,78,127,134,143,152,160],"interact":[39],"with":[40,166],"running":[41,66,116],"simulations":[43],"on":[44,154,168],"Grids.":[45],"This":[46],"work":[47],"is":[48,93],"performed":[49],"in":[50,73,136],"specific":[52],"context":[53],"MCell,":[55],"a":[56,96,129,169],"computational":[57],"biology":[58],"application.":[59],"While":[60],"MCell":[61,101,167],"basis":[64],"simulations,":[67],"its":[68,104],"capabilities":[69],"are":[70,86],"currently":[71],"limited":[72],"terms":[74],"scale,":[76],"ease-of-use,":[77],"interactivity.":[79],"These":[80],"limitations":[81],"preclude":[82],"usage":[83],"scenarios":[84],"critical":[87],"advances.":[90],"Our":[91],"goal":[92],"create":[95],"\"Virtual":[98],"Instrument\"":[99],"from":[100],"by":[102],"allowing":[103],"users":[105],"transparently":[107],"access":[108],"Grid":[109,140,171],"resources":[110],"while":[111],"being":[112],"able":[113],"steer":[115],"simulations.":[117],"paper,":[120],"motivate":[122],"project":[126],"discuss":[128],"number":[130],"relevant":[132],"issues":[133],"accomplishments":[135],"area":[138],"software":[141,150],"development":[142],"scheduling.":[145],"We":[146,158],"then":[147],"describe":[148],"our":[149,162],"design":[151,163],"report":[153],"current":[156],"implementation.":[157],"verify":[159],"evaluate":[161],"via":[164],"experiments":[165],"real-world":[170],"testbed.":[172]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":4}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
