{"id":"https://openalex.org/W2023779170","doi":"https://doi.org/10.1177/0037549711425180","title":"Data-parallel techniques for simulating a mega-scale agent-based model of systemic inflammatory response syndrome on graphics processing units","display_name":"Data-parallel techniques for simulating a mega-scale agent-based model of systemic inflammatory response syndrome on graphics processing units","publication_year":2011,"publication_date":"2011-11-17","ids":{"openalex":"https://openalex.org/W2023779170","doi":"https://doi.org/10.1177/0037549711425180","mag":"2023779170"},"language":"en","primary_location":{"id":"doi:10.1177/0037549711425180","is_oa":false,"landing_page_url":"https://doi.org/10.1177/0037549711425180","pdf_url":null,"source":{"id":"https://openalex.org/S32573412","display_name":"SIMULATION","issn_l":"0037-5497","issn":["0037-5497","1741-3133"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SIMULATION","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033111606","display_name":"Samuel Alberts","orcid":null},"institutions":[{"id":"https://openalex.org/I50702494","display_name":"Milwaukee School of Engineering","ror":"https://ror.org/04h7cfr36","country_code":"US","type":"education","lineage":["https://openalex.org/I50702494"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Samuel Alberts","raw_affiliation_strings":["Department of Mechanical Engineering, College of Engineering and Applied Science, Milwaukee, WI, USA","Department of Mechanical Engineering, College of Engineering and Applied Science, Milwaukee, WI, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering, College of Engineering and Applied Science, Milwaukee, WI, USA","institution_ids":["https://openalex.org/I50702494"]},{"raw_affiliation_string":"Department of Mechanical Engineering, College of Engineering and Applied Science, Milwaukee, WI, USA#TAB#","institution_ids":["https://openalex.org/I50702494"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045387179","display_name":"Michael Keenan","orcid":null},"institutions":[{"id":"https://openalex.org/I50702494","display_name":"Milwaukee School of Engineering","ror":"https://ror.org/04h7cfr36","country_code":"US","type":"education","lineage":["https://openalex.org/I50702494"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael K Keenan","raw_affiliation_strings":["Department of Mechanical Engineering, College of Engineering and Applied Science, Milwaukee, WI, USA","Department of Mechanical Engineering, College of Engineering and Applied Science, Milwaukee, WI, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering, College of Engineering and Applied Science, Milwaukee, WI, USA","institution_ids":["https://openalex.org/I50702494"]},{"raw_affiliation_string":"Department of Mechanical Engineering, College of Engineering and Applied Science, Milwaukee, WI, USA#TAB#","institution_ids":["https://openalex.org/I50702494"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101690002","display_name":"Roshan M. D\u2019Souza","orcid":"https://orcid.org/0000-0001-5598-7218"},"institutions":[{"id":"https://openalex.org/I50702494","display_name":"Milwaukee School of Engineering","ror":"https://ror.org/04h7cfr36","country_code":"US","type":"education","lineage":["https://openalex.org/I50702494"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Roshan M D\u2019Souza","raw_affiliation_strings":["Department of Mechanical Engineering, College of Engineering and Applied Science, Milwaukee, WI, USA","Department of Mechanical Engineering, College of Engineering and Applied Science, Milwaukee, WI, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering, College of Engineering and Applied Science, Milwaukee, WI, USA","institution_ids":["https://openalex.org/I50702494"]},{"raw_affiliation_string":"Department of Mechanical Engineering, College of Engineering and Applied Science, Milwaukee, WI, USA#TAB#","institution_ids":["https://openalex.org/I50702494"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042696510","display_name":"Gary An","orcid":"https://orcid.org/0000-0003-4549-9004"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gary An","raw_affiliation_strings":["Department of Surgery, University of Chicago, Pritzker School of Medicine, Chicago, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Surgery, University of Chicago, Pritzker School of Medicine, Chicago, IL, USA","institution_ids":["https://openalex.org/I40347166"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.9225,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.85824775,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"88","issue":"8","first_page":"895","last_page":"907"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10482","display_name":"Mathematical and Theoretical Epidemiology and Ecology Models","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10482","display_name":"Mathematical and Theoretical Epidemiology and Ecology Models","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11829","display_name":"Mathematical Biology Tumor Growth","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.7690366506576538},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.7576688528060913},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7537145614624023},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7510687112808228},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5684530138969421},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.5382798314094543},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics","score":0.4920289218425751},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4759378433227539},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.45590725541114807},{"id":"https://openalex.org/keywords/response-time","display_name":"Response time","score":0.43072742223739624},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.3957974314689636},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.166070818901062},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.14495143294334412},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11177542805671692},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.09783443808555603},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.06575632095336914}],"concepts":[{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.7690366506576538},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.7576688528060913},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7537145614624023},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7510687112808228},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5684530138969421},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.5382798314094543},{"id":"https://openalex.org/C77660652","wikidata":"https://www.wikidata.org/wiki/Q150971","display_name":"Computer graphics","level":2,"score":0.4920289218425751},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4759378433227539},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.45590725541114807},{"id":"https://openalex.org/C19012869","wikidata":"https://www.wikidata.org/wiki/Q578372","display_name":"Response time","level":2,"score":0.43072742223739624},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.3957974314689636},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.166070818901062},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.14495143294334412},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11177542805671692},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.09783443808555603},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.06575632095336914},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1177/0037549711425180","is_oa":false,"landing_page_url":"https://doi.org/10.1177/0037549711425180","pdf_url":null,"source":{"id":"https://openalex.org/S32573412","display_name":"SIMULATION","issn_l":"0037-5497","issn":["0037-5497","1741-3133"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SIMULATION","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1575732703","https://openalex.org/W1762731526","https://openalex.org/W1973736961","https://openalex.org/W1979081194","https://openalex.org/W1992033406","https://openalex.org/W2002039787","https://openalex.org/W2020672656","https://openalex.org/W2024161345","https://openalex.org/W2056464330","https://openalex.org/W2056662119","https://openalex.org/W2066611395","https://openalex.org/W2130071305","https://openalex.org/W2136682506","https://openalex.org/W2139802217","https://openalex.org/W2147353351","https://openalex.org/W2151982028","https://openalex.org/W2398736067","https://openalex.org/W2763437374","https://openalex.org/W2765488235","https://openalex.org/W2912031620","https://openalex.org/W2914551013","https://openalex.org/W3121649590","https://openalex.org/W4244457258","https://openalex.org/W4250089307"],"related_works":["https://openalex.org/W2120447654","https://openalex.org/W2977179488","https://openalex.org/W2144453115","https://openalex.org/W2128223750","https://openalex.org/W4238532390","https://openalex.org/W2188872161","https://openalex.org/W2002978035","https://openalex.org/W2961779879","https://openalex.org/W2610007503","https://openalex.org/W2221819563"],"abstract_inverted_index":{"Agent-based":[0],"modeling":[1],"is":[2,17],"increasingly":[3],"being":[4],"used":[5],"for":[6,112],"computer":[7],"simulation":[8,20,76,108],"of":[9,25,33,44,54,62,102,143,154],"complex":[10],"biological":[11,88],"systems.":[12],"An":[13],"agent-based":[14],"model":[15,27,56],"(ABM)":[16],"a":[18,123,164,181,187],"bottom-up":[19],"where":[21,90],"the":[22,26,30,52,55,60,75,79,140,155],"bulk":[23,46],"dynamics":[24],"result":[28],"from":[29,122],"local":[31],"interactions":[32],"its":[34],"individual":[35,103],"constituents":[36],"or":[37,99],"agents.":[38],"However,":[39],"due":[40],"to":[41,51,72,138,167],"emergent":[42],"qualities":[43],"ABMs,":[45],"behaviors":[47],"may":[48,69,83],"be":[49,70,84],"sensitive":[50],"size":[53,77],"as":[57],"determined":[58],"by":[59],"population":[61],"individuals.":[63],"Therefore,":[64],"in":[65,87,184,189],"certain":[66],"circumstances":[67],"it":[68],"critical":[71],"closely":[73],"match":[74],"with":[78],"actual":[80],"system.":[81],"This":[82],"particularly":[85],"true":[86],"systems,":[89],"multiple":[91],"large-scale":[92],"heterogeneous":[93],"populations":[94],"can":[95],"range":[96],"into":[97],"millions":[98],"even":[100],"billions":[101],"cells/agents.":[104],"Most":[105],"existing":[106],"ABM":[107,132],"toolkits":[109],"are":[110],"designed":[111],"serial":[113,165],"computing":[114],"and":[115],"canno*t":[116],"effectively":[117],"simulate":[118],"such":[119],"mega-scale":[120],"systems":[121],"run-time":[124],"standpoint.":[125],"In":[126],"this":[127],"paper,":[128],"we":[129,148],"investigate":[130],"data-parallel":[131],"implementations":[133],"on":[134,176],"graphics":[135,177],"processing":[136,178],"units":[137,179],"address":[139],"scalability":[141],"issue":[142],"ABMs.":[144],"As":[145],"an":[146,151],"example,":[147],"have":[149],"implemented":[150,163],"abstracted":[152],"version":[153,166],"Systemic":[156],"Inflammatory":[157],"Response":[158],"Syndrome":[159],"ABM.":[160],"We":[161],"also":[162],"confirm":[168],"statistical":[169],"accuracy.":[170,190],"Our":[171],"results":[172],"show":[173],"that":[174],"parallelization":[175],"offers":[180],"substantial":[182],"gain":[183],"performance":[185],"without":[186],"loss":[188]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}