{"id":"https://openalex.org/W2169054892","doi":"https://doi.org/10.1177/0037549706075479","title":"Cost-based Partitioning for Distributed and Parallel Simulation of Decomposable Multiscale Constructive Models","display_name":"Cost-based Partitioning for Distributed and Parallel Simulation of Decomposable Multiscale Constructive Models","publication_year":2006,"publication_date":"2006-12-01","ids":{"openalex":"https://openalex.org/W2169054892","doi":"https://doi.org/10.1177/0037549706075479","mag":"2169054892"},"language":"en","primary_location":{"id":"doi:10.1177/0037549706075479","is_oa":false,"landing_page_url":"https://doi.org/10.1177/0037549706075479","pdf_url":null,"source":{"id":"https://openalex.org/S32573412","display_name":"SIMULATION","issn_l":"0037-5497","issn":["0037-5497","1741-3133"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SIMULATION","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Sunwoo Park","orcid":null},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]},{"id":"https://openalex.org/I4210121250","display_name":"NGM Biopharmaceuticals (United States)","ror":"https://ror.org/01x8fkj71","country_code":"US","type":"company","lineage":["https://openalex.org/I4210121250"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sunwoo Park","raw_affiliation_strings":["BioSystems Group, Department of Biopharmaceutical Sciences University of                         California, San Francisco 513 Parnassus Ave, San Francisco CA 94143-0446, USA","BioSystems Group, Department of Biopharmaceutical Sciences University of California, San Francisco 513 Parnassus Ave, San Francisco CA 94143-0446, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioSystems Group, Department of Biopharmaceutical Sciences University of                         California, San Francisco 513 Parnassus Ave, San Francisco CA 94143-0446, USA","institution_ids":["https://openalex.org/I4210121250"]},{"raw_affiliation_string":"BioSystems Group, Department of Biopharmaceutical Sciences University of California, San Francisco 513 Parnassus Ave, San Francisco CA 94143-0446, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001335754","display_name":"C. Anthony Hunt","orcid":"https://orcid.org/0000-0001-9372-6860"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"C. Anthony Hunt","raw_affiliation_strings":["BioSystems Group, Department of Biopharmaceutical Sciences, and Joint                         Graduate Group in Bioengineering University of California, Berkeley and San                         Francisco 513 Parnassus Ave, San Francisco CA 94143-0446, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioSystems Group, Department of Biopharmaceutical Sciences, and Joint                         Graduate Group in Bioengineering University of California, Berkeley and San                         Francisco 513 Parnassus Ave, San Francisco CA 94143-0446, USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084087393","display_name":"Bernard P. Zeigler","orcid":"https://orcid.org/0000-0003-0636-1352"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bernard P. Zeigler","raw_affiliation_strings":["Department of Electrical and Computer Engineering University of Arizona,                         1230 E. Speedway Blvd Tucson, AZ 85721, USA","Department of Electrical and Computer Engineering University of Arizona, 1230 E. Speedway Blvd Tucson, AZ 85721, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering University of Arizona,                         1230 E. Speedway Blvd Tucson, AZ 85721, USA","institution_ids":["https://openalex.org/I138006243"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering University of Arizona, 1230 E. Speedway Blvd Tucson, AZ 85721, USA","institution_ids":["https://openalex.org/I138006243"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5001335754"],"corresponding_institution_ids":["https://openalex.org/I95457486"],"apc_list":null,"apc_paid":null,"fwci":0.2808,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.59502848,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"82","issue":"12","first_page":"809","last_page":"826"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10904","display_name":"Embedded Systems Design Techniques","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10904","display_name":"Embedded Systems Design Techniques","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11522","display_name":"VLSI and FPGA Design Techniques","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7000948786735535},{"id":"https://openalex.org/keywords/partition","display_name":"Partition (number theory)","score":0.644973635673523},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.6391786932945251},{"id":"https://openalex.org/keywords/space-partitioning","display_name":"Space partitioning","score":0.5076733827590942},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5073561072349548},{"id":"https://openalex.org/keywords/set-partitioning-in-hierarchical-trees","display_name":"Set partitioning in hierarchical trees","score":0.49784398078918457},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4419425427913666},{"id":"https://openalex.org/keywords/constructive","display_name":"Constructive","score":0.43972456455230713},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3957839608192444},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.35834911465644836},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.33336567878723145},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21701064705848694},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14755865931510925}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7000948786735535},{"id":"https://openalex.org/C42812","wikidata":"https://www.wikidata.org/wiki/Q1082910","display_name":"Partition (number theory)","level":2,"score":0.644973635673523},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.6391786932945251},{"id":"https://openalex.org/C13670688","wikidata":"https://www.wikidata.org/wiki/Q3500548","display_name":"Space partitioning","level":2,"score":0.5076733827590942},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5073561072349548},{"id":"https://openalex.org/C136968285","wikidata":"https://www.wikidata.org/wiki/Q3246374","display_name":"Set partitioning in hierarchical trees","level":5,"score":0.49784398078918457},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4419425427913666},{"id":"https://openalex.org/C2778701210","wikidata":"https://www.wikidata.org/wiki/Q28130034","display_name":"Constructive","level":3,"score":0.43972456455230713},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3957839608192444},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.35834911465644836},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.33336567878723145},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21701064705848694},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14755865931510925},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C13481523","wikidata":"https://www.wikidata.org/wiki/Q412438","display_name":"Image compression","level":4,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1177/0037549706075479","is_oa":false,"landing_page_url":"https://doi.org/10.1177/0037549706075479","pdf_url":null,"source":{"id":"https://openalex.org/S32573412","display_name":"SIMULATION","issn_l":"0037-5497","issn":["0037-5497","1741-3133"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320017","host_organization_name":"SAGE Publishing","host_organization_lineage":["https://openalex.org/P4310320017"],"host_organization_lineage_names":["SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SIMULATION","raw_type":"journal-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.117.3685","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.117.3685","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://sim.sagepub.com/cgi/reprint/82/12/809.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.302.4290","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.302.4290","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://cell-devs.sce.carleton.ca/citations/809.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.302.6923","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.302.6923","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://cell-devs.sce.carleton.ca/citations/GMPv4.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W320627270","https://openalex.org/W1515691539","https://openalex.org/W1532006000","https://openalex.org/W1538070674","https://openalex.org/W1966461475","https://openalex.org/W1977596634","https://openalex.org/W1981893977","https://openalex.org/W1984283136","https://openalex.org/W1998762510","https://openalex.org/W2001598892","https://openalex.org/W2002482371","https://openalex.org/W2015925158","https://openalex.org/W2024571181","https://openalex.org/W2034706203","https://openalex.org/W2035409768","https://openalex.org/W2042901985","https://openalex.org/W2046238609","https://openalex.org/W2049400214","https://openalex.org/W2070232376","https://openalex.org/W2072687349","https://openalex.org/W2073890622","https://openalex.org/W2095117703","https://openalex.org/W2095721262","https://openalex.org/W2096159022","https://openalex.org/W2102164878","https://openalex.org/W2105748885","https://openalex.org/W2108723074","https://openalex.org/W2111516947","https://openalex.org/W2114030927","https://openalex.org/W2128193809","https://openalex.org/W2131126403","https://openalex.org/W2132596444","https://openalex.org/W2134085311","https://openalex.org/W2136372004","https://openalex.org/W2143784594","https://openalex.org/W2145499077","https://openalex.org/W2150423768","https://openalex.org/W2154805642","https://openalex.org/W2156916299","https://openalex.org/W2161455936","https://openalex.org/W2163013360","https://openalex.org/W2169647400","https://openalex.org/W2403488764","https://openalex.org/W2611896081","https://openalex.org/W2786884778","https://openalex.org/W2913176804","https://openalex.org/W2914203482","https://openalex.org/W2998022228","https://openalex.org/W4213135654","https://openalex.org/W4236940317","https://openalex.org/W4245266864"],"related_works":["https://openalex.org/W2510361549","https://openalex.org/W1586415854","https://openalex.org/W3008857645","https://openalex.org/W2073947114","https://openalex.org/W1895366714","https://openalex.org/W2061980994","https://openalex.org/W2090617251","https://openalex.org/W4389304954","https://openalex.org/W109757404","https://openalex.org/W1540431531"],"abstract_inverted_index":{"We":[0],"present":[1],"a":[2,25,30,37,85,116,139],"concise,":[3],"generic,":[4],"and":[5,12,40,50,63,70,77,89,126,128,151,163],"configurable":[6],"partitioning":[7,21,54,58,91,106,124,130,142],"approach":[8],"for":[9],"decomposable,":[10],"modular,":[11],"multiscale":[13,27,171],"(or":[14],"hierarchical)":[15],"constructive":[16],"models.":[17,174],"A":[18],"generic":[19,129],"model":[20,28,48],"(GMP)":[22],"algorithm":[23,98,134,159],"decomposes":[24],"given":[26],"to":[29,74,84,102,138],"set":[31],"of":[32,111,118,141,165,169],"partition":[33],"blocks":[34],"based":[35],"on":[36],"cost":[38,61,79,87],"modeling":[39,62],"analysis":[41,64],"method":[42,65],"in":[43,144,166],"polynomial":[44],"time.":[45],"It":[46,154],"minimizes":[47],"decompositions":[49],"constructs":[51],"monotonically":[52],"improved":[53],"outcomes":[55],"during":[56],"the":[57,94,96,104,132,158],"process.":[59],"The":[60],"enables":[66],"translating":[67,82],"subjective,":[68],"domain-specific,":[69],"heterogeneous":[71],"resource":[72],"information":[73],"objective,":[75],"domain-independent,":[76],"homogeneous":[78,86],"information.":[80],"By":[81],"models":[83],"space":[88],"describing":[90],"logics":[92],"over":[93],"space,":[95],"proposed":[97,133],"utilizes":[99],"domain-specific":[100,123],"knowledge":[101],"produce":[103],"best":[105],"results":[107],"without":[108],"any":[109],"modification":[110],"its":[112,119],"programming":[113],"logics.":[114],"As":[115],"consequence":[117],"clean":[120],"separation":[121],"between":[122],"requirements":[125],"goals,":[127],"logic,":[131],"can":[135],"be":[136],"applied":[137],"variety":[140],"problems":[143],"large-scale":[145],"systems":[146],"biology":[147],"research":[148],"utilizing":[149],"distributed":[150],"parallel":[152],"simulation.":[153],"is":[155],"expected":[156],"that":[157],"improves":[160],"overall":[161],"performance":[162],"efficiency":[164],"silico":[167],"experimentation":[168],"complex":[170],"biological":[172],"system":[173]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
