{"id":"https://openalex.org/W2963743515","doi":"https://doi.org/10.1162/isal_a_00161","title":"Investigating the Origins of Cancer in the Intestinal Crypt with a Gene Network Agent Based Hybrid Model","display_name":"Investigating the Origins of Cancer in the Intestinal Crypt with a Gene Network Agent Based Hybrid Model","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2963743515","doi":"https://doi.org/10.1162/isal_a_00161","mag":"2963743515"},"language":"en","primary_location":{"id":"doi:10.1162/isal_a_00161","is_oa":true,"landing_page_url":"https://doi.org/10.1162/isal_a_00161","pdf_url":"https://www.mitpressjournals.org/doi/pdf/10.1162/isal_a_00161","source":{"id":"https://openalex.org/S4363608301","display_name":"The 2019 Conference on Artificial Life","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The 2019 Conference on Artificial Life","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://www.mitpressjournals.org/doi/pdf/10.1162/isal_a_00161","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009606518","display_name":"Arturo Araujo","orcid":"https://orcid.org/0000-0002-0269-2819"},"institutions":[{"id":"https://openalex.org/I4210134494","display_name":"Braintree Community Hospital","ror":"https://ror.org/03m3n7e70","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I4210113937","https://openalex.org/I4210134494"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Arturo Araujo","raw_affiliation_strings":["Braintree Ltd, London, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Braintree Ltd, London, United Kingdom","institution_ids":["https://openalex.org/I4210134494"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103190188","display_name":"Hanxiao Zhang","orcid":"https://orcid.org/0000-0002-8800-8693"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Hanxiao Zhang","raw_affiliation_strings":["CoMPLEX, UCL, London, United Kingdom"],"affiliations":[{"raw_affiliation_string":"CoMPLEX, UCL, London, United Kingdom","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041518866","display_name":"Albert R\u00fcbben","orcid":"https://orcid.org/0000-0002-2704-4754"},"institutions":[{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Albert R\u00fcbben","raw_affiliation_strings":["Euregio Skin Cancer Center, Department of Dermatology, University Hospital RWTH, Aachen, Germany"],"affiliations":[{"raw_affiliation_string":"Euregio Skin Cancer Center, Department of Dermatology, University Hospital RWTH, Aachen, Germany","institution_ids":["https://openalex.org/I887968799"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017277682","display_name":"Peter J. Bentley","orcid":"https://orcid.org/0000-0001-6744-9302"},"institutions":[{"id":"https://openalex.org/I4210134494","display_name":"Braintree Community Hospital","ror":"https://ror.org/03m3n7e70","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I4210113937","https://openalex.org/I4210134494"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Peter J Bentley","raw_affiliation_strings":["Braintree Ltd, London, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Braintree Ltd, London, United Kingdom","institution_ids":["https://openalex.org/I4210134494"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5009606518"],"corresponding_institution_ids":["https://openalex.org/I4210134494"],"apc_list":null,"apc_paid":null,"fwci":3.1525,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.91304348,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"195","last_page":"202"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9783999919891357,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9783999919891357,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9269000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/crypt","display_name":"Crypt","score":0.8686134815216064},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5404402613639832},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5087488293647766},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4609556496143341},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43717411160469055},{"id":"https://openalex.org/keywords/intestinal-cancer","display_name":"Intestinal Cancer","score":0.428882896900177},{"id":"https://openalex.org/keywords/colorectal-cancer","display_name":"Colorectal cancer","score":0.32807475328445435},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30275875329971313},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22343146800994873},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.06948861479759216}],"concepts":[{"id":"https://openalex.org/C66090201","wikidata":"https://www.wikidata.org/wiki/Q15995009","display_name":"Crypt","level":2,"score":0.8686134815216064},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5404402613639832},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5087488293647766},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4609556496143341},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43717411160469055},{"id":"https://openalex.org/C2910187823","wikidata":"https://www.wikidata.org/wiki/Q188874","display_name":"Intestinal Cancer","level":4,"score":0.428882896900177},{"id":"https://openalex.org/C526805850","wikidata":"https://www.wikidata.org/wiki/Q188874","display_name":"Colorectal cancer","level":3,"score":0.32807475328445435},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30275875329971313},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22343146800994873},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.06948861479759216}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1162/isal_a_00161","is_oa":true,"landing_page_url":"https://doi.org/10.1162/isal_a_00161","pdf_url":"https://www.mitpressjournals.org/doi/pdf/10.1162/isal_a_00161","source":{"id":"https://openalex.org/S4363608301","display_name":"The 2019 Conference on Artificial Life","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The 2019 Conference on Artificial Life","raw_type":"proceedings-article"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:10090012","is_oa":false,"landing_page_url":"https://discovery.ucl.ac.uk/id/eprint/10090012/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"     In: Fellermann, H and Bacardit, J and Go\u00f1i-Moreno, \u00c1 and F\u00fcchslin, RM, (eds.) ALIFE 2019: The 2019 Conference on Artificial Life.  (pp. pp. 195-202).  The MIT Press: Newcastle, UK. (2019)     ","raw_type":"Proceedings paper"}],"best_oa_location":{"id":"doi:10.1162/isal_a_00161","is_oa":true,"landing_page_url":"https://doi.org/10.1162/isal_a_00161","pdf_url":"https://www.mitpressjournals.org/doi/pdf/10.1162/isal_a_00161","source":{"id":"https://openalex.org/S4363608301","display_name":"The 2019 Conference on Artificial Life","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The 2019 Conference on Artificial Life","raw_type":"proceedings-article"},"sustainable_development_goals":[{"score":0.8700000047683716,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":true},"content_urls":{"grobid_xml":"https://content.openalex.org/works/W2963743515.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2013320174","https://openalex.org/W1992711930","https://openalex.org/W2113905655","https://openalex.org/W200423708","https://openalex.org/W2049303898","https://openalex.org/W2974141030","https://openalex.org/W293487057","https://openalex.org/W2317361310","https://openalex.org/W4236469769","https://openalex.org/W4242282445"],"abstract_inverted_index":{"Colorectal":[0],"cancer":[1],"(CRC)":[2],"is":[3,65,72,77],"the":[4,10,34,51,85,98,107,111,120,135,154,168,173,188,201,213],"second":[5],"most":[6,52],"common":[7],"tumour":[8],"in":[9,33,84,97,128,134,148,197,212],"world":[11],"(Bray,":[12],"2018).":[13],"It":[14],"has":[15],"been":[16],"proposed":[17],"that":[18,28,55,70,76,101],"morbidity":[19],"and":[20,59,113,137,143,158,180,190],"mortality":[21],"could":[22],"be":[23,81,209],"mitigated":[24],"by":[25],"screening":[26],"methods":[27],"identify":[29],"key":[30,145,178],"genetic":[31,195],"mutations":[32,54,196],"DNA":[35],"of":[36,50,95,119,156,160,172,175,183,193],"a":[37,47,73,123,205],"patient\u2019s":[38],"biosample":[39],"(Traverso,":[40],"2002).":[41],"However,":[42],"for":[43],"this":[44,164,184],"to":[45,80,166,200,208],"work,":[46],"theoretical":[48],"understanding":[49,182],"likely":[53,79,206],"initiate":[56],"malignant":[57],"transformation,":[58],"how":[60],"they":[61],"affect":[62],"subsequent":[63],"microevolution,":[64],"needed.":[66],"Specifically,":[67],"we":[68,90],"hypothesise":[69],"there":[71],"CRC-proliferative":[74],"mutation":[75,207],"more":[78],"initially":[82,210],"fixated":[83],"crypt.":[86,214],"To":[87],"investigate":[88],"this,":[89],"developed":[91],"an":[92],"agent-based":[93],"model":[94,165],"cells":[96,121],"colon":[99],"crypt":[100,136],"shows":[102],"emergent":[103],"biological":[104,169],"homeostasis":[105,133],"at":[106],"tissue":[108],"level":[109],"from":[110],"cellular":[112],"molecular":[114,124],"interactions.":[115],"We":[116,141,162,186],"equipped":[117],"each":[118],"with":[122],"gene":[125,203],"network":[126],"which,":[127,150],"their":[129],"wildtype":[130],"state,":[131],"regulates":[132],"recapitulates":[138],"known":[139],"behaviour.":[140],"identified":[142],"modelled":[144],"genes":[146],"implicated":[147],"CRC":[149],"when":[151],"mutated,":[152],"alter":[153],"rate":[155],"death":[157],"division":[159],"cells.":[161],"used":[163],"study":[167],"first":[170],"principles":[171],"fixation":[174],"mutations,":[176],"offering":[177],"spatial":[179],"temporal":[181],"process.":[185],"discuss":[187],"impact":[189],"clinical":[191],"relevance":[192],"proliferative":[194],"isolation,":[198],"pointing":[199],"KRAS":[202],"as":[204],"fixed":[211]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
