{"id":"https://openalex.org/W4293768469","doi":"https://doi.org/10.1162/dint_a_00136","title":"Galaxy: A Decade of Realising CWFR Concepts","display_name":"Galaxy: A Decade of Realising CWFR Concepts","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4293768469","doi":"https://doi.org/10.1162/dint_a_00136"},"language":"en","primary_location":{"id":"doi:10.1162/dint_a_00136","is_oa":true,"landing_page_url":"https://doi.org/10.1162/dint_a_00136","pdf_url":"https://direct.mit.edu/dint/article-pdf/4/2/358/2012360/dint_a_00136.pdf","source":{"id":"https://openalex.org/S4210186383","display_name":"Data Intelligence","issn_l":"2096-7004","issn":["2096-7004","2641-435X"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315718","host_organization_name":"The MIT Press","host_organization_lineage":["https://openalex.org/P4310315718"],"host_organization_lineage_names":["The MIT Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://direct.mit.edu/dint/article-pdf/4/2/358/2012360/dint_a_00136.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040875640","display_name":"Beatriz Serrano\u2010Solano","orcid":"https://orcid.org/0000-0002-5862-6132"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Beatriz Serrano-Solano","raw_affiliation_strings":["Bioinformatics Group, University of Freiburg, Baden-W\u00fcrttemberg 79098, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, University of Freiburg, Baden-W\u00fcrttemberg 79098, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062293799","display_name":"Anne Fouilloux","orcid":"https://orcid.org/0000-0002-1784-2920"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Anne Fouilloux","raw_affiliation_strings":["Department of Geosciences, University of Oslo, Oslo 0316, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Geosciences, University of Oslo, Oslo 0316, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060114066","display_name":"Ignacio Eguinoa","orcid":"https://orcid.org/0000-0002-6190-122X"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Ignacio Eguinoa","raw_affiliation_strings":["Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium","VIB, Gent, Oost-Vlaanderen 9052, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"VIB, Gent, Oost-Vlaanderen 9052, Belgium","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007975575","display_name":"Mat\u00fa\u0161 Kala\u0161","orcid":"https://orcid.org/0000-0002-1509-4981"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Mat\u00fa\u0161 Kala\u0161","raw_affiliation_strings":["Department of Informatics, University of Bergen Ringgold standard institution, University of Bergen, Bergen, Hordaland 5008, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, University of Bergen Ringgold standard institution, University of Bergen, Bergen, Hordaland 5008, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006559585","display_name":"Bj\u00f6rn Gr\u00fcning","orcid":"https://orcid.org/0000-0002-3079-6586"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bj\u00f6rn Gr\u00fcning","raw_affiliation_strings":["Bioinformatics Group, University of Freiburg, Baden-W\u00fcrttemberg 79098, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, University of Freiburg, Baden-W\u00fcrttemberg 79098, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034617878","display_name":"Frederik Coppens","orcid":"https://orcid.org/0000-0001-6565-5145"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Frederik Coppens","raw_affiliation_strings":["Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium","VIB, Gent, Oost-Vlaanderen 9052, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"VIB, Gent, Oost-Vlaanderen 9052, Belgium","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5040875640","https://openalex.org/A5062293799"],"corresponding_institution_ids":["https://openalex.org/I161046081","https://openalex.org/I184942183"],"apc_list":null,"apc_paid":null,"fwci":5.1281,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.95499603,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"4","issue":"2","first_page":"358","last_page":"371"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8613225221633911},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6011605262756348},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.557037353515625},{"id":"https://openalex.org/keywords/best-practice","display_name":"Best practice","score":0.5028166174888611},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4945964515209198},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4766034483909607},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.13353532552719116},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.09368616342544556}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8613225221633911},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6011605262756348},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.557037353515625},{"id":"https://openalex.org/C184356942","wikidata":"https://www.wikidata.org/wiki/Q830382","display_name":"Best practice","level":2,"score":0.5028166174888611},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4945964515209198},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4766034483909607},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.13353532552719116},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.09368616342544556},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1162/dint_a_00136","is_oa":true,"landing_page_url":"https://doi.org/10.1162/dint_a_00136","pdf_url":"https://direct.mit.edu/dint/article-pdf/4/2/358/2012360/dint_a_00136.pdf","source":{"id":"https://openalex.org/S4210186383","display_name":"Data Intelligence","issn_l":"2096-7004","issn":["2096-7004","2641-435X"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315718","host_organization_name":"The MIT Press","host_organization_lineage":["https://openalex.org/P4310315718"],"host_organization_lineage_names":["The MIT Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data Intelligence","raw_type":"journal-article"},{"id":"pmh:oai:archive.ugent.be:01HPPE6T53G4VWSYQN8MYXXZT6","is_oa":true,"landing_page_url":"https://biblio.ugent.be/publication/01HPPE6T53G4VWSYQN8MYXXZT6","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 2641-435X","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:bora.uib.no:11250/3054760","is_oa":true,"landing_page_url":"https://hdl.handle.net/11250/3054760","pdf_url":null,"source":{"id":"https://openalex.org/S4306401716","display_name":"Duo Research Archive (University of Oslo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184942183","host_organization_name":"University of Oslo","host_organization_lineage":["https://openalex.org/I184942183"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Data Intelligence","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:7de016208dc34860bc3c0ffe1102281e","is_oa":false,"landing_page_url":"https://doaj.org/article/7de016208dc34860bc3c0ffe1102281e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Data Intelligence, Vol 4, Iss 2 (2022)","raw_type":"article"},{"id":"pmh:oai:www.duo.uio.no:10852/99834","is_oa":true,"landing_page_url":"http://hdl.handle.net/10852/99834","pdf_url":null,"source":{"id":"https://openalex.org/S4306401717","display_name":"Duo Research Archive (University of Oslo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184942183","host_organization_name":"University of Oslo","host_organization_lineage":["https://openalex.org/I184942183"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2096-7004","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1162/dint_a_00136","is_oa":true,"landing_page_url":"https://doi.org/10.1162/dint_a_00136","pdf_url":"https://direct.mit.edu/dint/article-pdf/4/2/358/2012360/dint_a_00136.pdf","source":{"id":"https://openalex.org/S4210186383","display_name":"Data Intelligence","issn_l":"2096-7004","issn":["2096-7004","2641-435X"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315718","host_organization_name":"The MIT Press","host_organization_lineage":["https://openalex.org/P4310315718"],"host_organization_lineage_names":["The MIT Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data Intelligence","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5}],"awards":[{"id":"https://openalex.org/G2431772652","display_name":null,"funder_award_id":"031 A538A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G2520997384","display_name":null,"funder_award_id":"031 A538A/A538C","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G2687563341","display_name":null,"funder_award_id":"824087","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3353223441","display_name":"EOSC-Nordic","funder_award_id":"857652","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4771246982","display_name":null,"funder_award_id":"101017501","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4878633263","display_name":null,"funder_award_id":"031L0101C","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G5933564417","display_name":null,"funder_award_id":"824087","funder_id":"https://openalex.org/F4320319638","funder_display_name":"EOSC-Life"},{"id":"https://openalex.org/G6735483382","display_name":null,"funder_award_id":"270068","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G7842005466","display_name":null,"funder_award_id":"Horizon 2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8594859193","display_name":null,"funder_award_id":"I002819N","funder_id":"https://openalex.org/F4320321730","funder_display_name":"Fonds Wetenschappelijk Onderzoek"}],"funders":[{"id":"https://openalex.org/F4320319638","display_name":"EOSC-Life","ror":null},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320321730","display_name":"Fonds Wetenschappelijk Onderzoek","ror":"https://ror.org/03qtxy027"},{"id":"https://openalex.org/F4320323299","display_name":"Norges Forskningsr\u00e5d","ror":"https://ror.org/00epmv149"},{"id":"https://openalex.org/F4320327336","display_name":"Vlaamse regering","ror":null},{"id":"https://openalex.org/F4320330124","display_name":"German Network for Bioinformatics Infrastructure","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4293768469.pdf","grobid_xml":"https://content.openalex.org/works/W4293768469.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W2136482257","https://openalex.org/W2567253780","https://openalex.org/W2604622795","https://openalex.org/W2613409207","https://openalex.org/W2618602062","https://openalex.org/W2765426977","https://openalex.org/W2777476837","https://openalex.org/W2914118134","https://openalex.org/W2917207851","https://openalex.org/W2952157594","https://openalex.org/W2967150655","https://openalex.org/W2981131276","https://openalex.org/W3119340592","https://openalex.org/W3126032218","https://openalex.org/W3160782513","https://openalex.org/W3183441567","https://openalex.org/W4205738517"],"related_works":["https://openalex.org/W2002383399","https://openalex.org/W644644594","https://openalex.org/W2506073049","https://openalex.org/W642180557","https://openalex.org/W2780591772","https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W3122105723","https://openalex.org/W45233828","https://openalex.org/W2964988449"],"abstract_inverted_index":{"Abstract":[0],"Despite":[1],"recent":[2],"encouragement":[3],"to":[4,18,25,30,57,96,115],"follow":[5],"the":[6,9,22,32,48,54,79,86,97],"FAIR":[7,62],"principles,":[8],"day-to-day":[10],"research":[11,60,123],"practices":[12,98],"have":[13],"not":[14],"changed":[15],"substantially.":[16],"Due":[17],"new":[19],"developments":[20],"and":[21,34,53,118,124],"increasing":[23],"pressure":[24],"apply":[26],"best":[27],"practices,":[28],"initiatives":[29],"improve":[31],"efficiency":[33],"reproducibility":[35],"of":[36,50,99],"scientific":[37,100],"workflows":[38],"are":[39,82],"becoming":[40],"more":[41],"prevalent.":[42],"In":[43],"this":[44,111],"article,":[45],"we":[46,103],"discuss":[47],"importance":[49],"well-annotated":[51],"tools":[52],"specific":[55],"requirements":[56],"ensure":[58],"reproducible":[59],"with":[61,73],"outputs.":[63],"We":[64],"detail":[65],"how":[66],"Galaxy,":[67],"an":[68],"open-source":[69],"workflow":[70],"management":[71],"system":[72],"a":[74],"web-based":[75],"interface,":[76],"has":[77],"implemented":[78],"concepts":[80],"that":[81],"put":[83],"forward":[84],"by":[85],"Canonical":[87],"Workflow":[88],"Framework":[89],"for":[90],"Research":[91],"(CWFR),":[92],"whilst":[93],"minimising":[94],"changes":[95],"communities.":[101],"Although":[102],"showcase":[104],"concrete":[105],"applications":[106],"from":[107],"two":[108],"different":[109],"domains,":[110],"approach":[112],"is":[113],"generalisable":[114],"any":[116],"domain":[117],"particularly":[119],"useful":[120],"in":[121],"interdisciplinary":[122],"science-based":[125],"applications.":[126]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":2}],"updated_date":"2026-05-15T08:27:34.491423","created_date":"2025-10-10T00:00:00"}
