{"id":"https://openalex.org/W2289970606","doi":"https://doi.org/10.1162/artl_a_00196","title":"Exploring the Space of Viable Configurations in a Model of Metabolism\u2013Boundary Co-construction","display_name":"Exploring the Space of Viable Configurations in a Model of Metabolism\u2013Boundary Co-construction","publication_year":2016,"publication_date":"2016-03-02","ids":{"openalex":"https://openalex.org/W2289970606","doi":"https://doi.org/10.1162/artl_a_00196","mag":"2289970606","pmid":"https://pubmed.ncbi.nlm.nih.gov/26934090"},"language":"en","primary_location":{"id":"doi:10.1162/artl_a_00196","is_oa":false,"landing_page_url":"https://doi.org/10.1162/artl_a_00196","pdf_url":null,"source":{"id":"https://openalex.org/S2181302","display_name":"Artificial Life","issn_l":"1064-5462","issn":["1064-5462","1530-9185"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315718","host_organization_name":"The MIT Press","host_organization_lineage":["https://openalex.org/P4310315718"],"host_organization_lineage_names":["The MIT Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Life","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036760070","display_name":"Eran Agmon","orcid":"https://orcid.org/0000-0003-1279-2474"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Eran Agmon","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047198701","display_name":"Alexander J. Gates","orcid":"https://orcid.org/0000-0003-0099-7480"},"institutions":[{"id":"https://openalex.org/I592451","display_name":"Indiana University","ror":"https://ror.org/01kg8sb98","country_code":"US","type":"education","lineage":["https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander J. Gates","raw_affiliation_strings":["Indiana University"],"affiliations":[{"raw_affiliation_string":"Indiana University","institution_ids":["https://openalex.org/I592451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056426837","display_name":"Valentin Churavy","orcid":"https://orcid.org/0000-0002-9033-165X"},"institutions":[{"id":"https://openalex.org/I142637625","display_name":"Okinawa Institute of Science and Technology Graduate University","ror":"https://ror.org/02qg15b79","country_code":"JP","type":"education","lineage":["https://openalex.org/I142637625"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Valentin Churavy","raw_affiliation_strings":["Okinawa Institute of Science and Technology"],"affiliations":[{"raw_affiliation_string":"Okinawa Institute of Science and Technology","institution_ids":["https://openalex.org/I142637625"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014235111","display_name":"Randall D. Beer","orcid":"https://orcid.org/0000-0001-7279-3028"},"institutions":[{"id":"https://openalex.org/I592451","display_name":"Indiana University","ror":"https://ror.org/01kg8sb98","country_code":"US","type":"education","lineage":["https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Randall D. Beer","raw_affiliation_strings":["Indiana University"],"affiliations":[{"raw_affiliation_string":"Indiana University","institution_ids":["https://openalex.org/I592451"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5036760070"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":4.5017,"has_fulltext":false,"cited_by_count":33,"citation_normalized_percentile":{"value":0.94943943,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"22","issue":"2","first_page":"153","last_page":"171"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11252","display_name":"Evolutionary Game Theory and Cooperation","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/3312","display_name":"Sociology and Political Science"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11445","display_name":"Origins and Evolution of Life","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/3103","display_name":"Astronomy and Astrophysics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.8886023759841919},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.6650505661964417},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6088747978210449},{"id":"https://openalex.org/keywords/perturbation","display_name":"Perturbation (astronomy)","score":0.5617844462394714},{"id":"https://openalex.org/keywords/boundary","display_name":"Boundary (topology)","score":0.42592161893844604},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.36655718088150024},{"id":"https://openalex.org/keywords/biochemical-engineering","display_name":"Biochemical engineering","score":0.3231278955936432},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.24409088492393494},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2243313193321228},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.219041109085083},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09699550271034241},{"id":"https://openalex.org/keywords/mathematical-analysis","display_name":"Mathematical analysis","score":0.0892343521118164}],"concepts":[{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.8886023759841919},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.6650505661964417},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6088747978210449},{"id":"https://openalex.org/C177918212","wikidata":"https://www.wikidata.org/wiki/Q803623","display_name":"Perturbation (astronomy)","level":2,"score":0.5617844462394714},{"id":"https://openalex.org/C62354387","wikidata":"https://www.wikidata.org/wiki/Q875399","display_name":"Boundary (topology)","level":2,"score":0.42592161893844604},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.36655718088150024},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.3231278955936432},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.24409088492393494},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2243313193321228},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.219041109085083},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09699550271034241},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0892343521118164},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019369","descriptor_name":"Life","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019369","descriptor_name":"Life","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019369","descriptor_name":"Life","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1162/artl_a_00196","is_oa":false,"landing_page_url":"https://doi.org/10.1162/artl_a_00196","pdf_url":null,"source":{"id":"https://openalex.org/S2181302","display_name":"Artificial Life","issn_l":"1064-5462","issn":["1064-5462","1530-9185"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315718","host_organization_name":"The MIT Press","host_organization_lineage":["https://openalex.org/P4310315718"],"host_organization_lineage_names":["The MIT Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Life","raw_type":"journal-article"},{"id":"pmid:26934090","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26934090","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial life","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":41,"referenced_works":["https://openalex.org/W38625580","https://openalex.org/W234963275","https://openalex.org/W619321909","https://openalex.org/W1532738038","https://openalex.org/W1535686834","https://openalex.org/W1540898082","https://openalex.org/W1564141531","https://openalex.org/W1637936532","https://openalex.org/W1788939232","https://openalex.org/W1976324910","https://openalex.org/W2001828104","https://openalex.org/W2005345311","https://openalex.org/W2010069344","https://openalex.org/W2011214280","https://openalex.org/W2020454825","https://openalex.org/W2021114157","https://openalex.org/W2021767817","https://openalex.org/W2028932074","https://openalex.org/W2040525210","https://openalex.org/W2068178385","https://openalex.org/W2068670723","https://openalex.org/W2093020640","https://openalex.org/W2098884957","https://openalex.org/W2113753474","https://openalex.org/W2117453669","https://openalex.org/W2129280699","https://openalex.org/W2141327539","https://openalex.org/W2148546709","https://openalex.org/W2151525702","https://openalex.org/W2158186004","https://openalex.org/W2162385874","https://openalex.org/W2163874939","https://openalex.org/W2296679604","https://openalex.org/W2321824324","https://openalex.org/W2380395886","https://openalex.org/W2751555667","https://openalex.org/W2919661847","https://openalex.org/W3099329607","https://openalex.org/W3102310679","https://openalex.org/W4211017114","https://openalex.org/W6605160798"],"related_works":["https://openalex.org/W2770593030","https://openalex.org/W4281727072","https://openalex.org/W4312219546","https://openalex.org/W3154990682","https://openalex.org/W2171975302","https://openalex.org/W2142809053","https://openalex.org/W1532073221","https://openalex.org/W2156260160","https://openalex.org/W4306842392","https://openalex.org/W1969033266"],"abstract_inverted_index":{"We":[0,33],"introduce":[1],"a":[2,37,54,77,91],"spatial":[3],"model":[4,127,142],"of":[5,12,79,93,124,143],"concentration":[6],"dynamics":[7],"that":[8,15,146,152],"supports":[9],"the":[10,71,96,114,125,148],"emergence":[11],"spatiotemporal":[13],"inhomogeneities":[14],"engage":[16],"in":[17,29,47,70,139],"metabolism-boundary":[18],"co-construction.":[19],"These":[20,64],"configurations":[21,81],"exhibit":[22],"disintegration":[23],"following":[24],"some":[25],"perturbations,":[26,50],"and":[27,51,68,82,88,104,130,137],"self-repair":[28],"response":[30,48],"to":[31,41,43,49,58,60,75,107],"others.":[32],"define":[34],"robustness":[35,87],"as":[36,53,95,113],"viable":[38,55,62,80],"configuration's":[39,56],"tendency":[40,57],"return":[42],"its":[44],"prior":[45],"configuration":[46,115],"plasticity":[52,89],"change":[59],"other":[61],"configurations.":[63],"properties":[65],"are":[66],"demonstrated":[67],"quantified":[69],"model,":[72],"allowing":[73],"us":[74,106],"map":[76],"space":[78],"their":[83],"possible":[84],"transitions.":[85,117],"Combining":[86],"provides":[90],"measure":[92,108],"viability":[94,110,138,151],"average":[97],"expected":[98],"survival":[99],"time":[100],"under":[101],"ongoing":[102],"perturbation,":[103],"allows":[105],"how":[109],"is":[111,122,131],"affected":[112],"undergoes":[116],"The":[118],"framework":[119],"introduced":[120],"here":[121],"independent":[123],"specific":[126],"we":[128,153],"used,":[129],"applicable":[132],"for":[133,150],"quantifying":[134],"robustness,":[135],"plasticity,":[136],"any":[140],"computational":[141],"artificial":[144],"life":[145],"demonstrates":[147],"conditions":[149],"promote.":[154]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":18},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
