{"id":"https://openalex.org/W2078327455","doi":"https://doi.org/10.1162/artl_a_00066","title":"Evolution of Resistance to Quorum Quenching in Digital Organisms","display_name":"Evolution of Resistance to Quorum Quenching in Digital Organisms","publication_year":2012,"publication_date":"2012-06-05","ids":{"openalex":"https://openalex.org/W2078327455","doi":"https://doi.org/10.1162/artl_a_00066","mag":"2078327455","pmid":"https://pubmed.ncbi.nlm.nih.gov/22662911"},"language":"en","primary_location":{"id":"doi:10.1162/artl_a_00066","is_oa":false,"landing_page_url":"https://doi.org/10.1162/artl_a_00066","pdf_url":null,"source":{"id":"https://openalex.org/S2181302","display_name":"Artificial Life","issn_l":"1064-5462","issn":["1064-5462","1530-9185"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315718","host_organization_name":"The MIT Press","host_organization_lineage":["https://openalex.org/P4310315718"],"host_organization_lineage_names":["The MIT Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Life","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051547805","display_name":"Benjamin E. Beckmann","orcid":null},"institutions":[{"id":"https://openalex.org/I1332737386","display_name":"General Electric (United States)","ror":"https://ror.org/013msgt25","country_code":"US","type":"company","lineage":["https://openalex.org/I1332737386"]},{"id":"https://openalex.org/I4210092162","display_name":"General Electric (Israel)","ror":"https://ror.org/00fymn751","country_code":"IL","type":"company","lineage":["https://openalex.org/I1332737386","https://openalex.org/I4210092162"]}],"countries":["IL","US"],"is_corresponding":true,"raw_author_name":"Benjamin E. Beckmann","raw_affiliation_strings":["General Electric Global Research","General Electric - Global Research"],"affiliations":[{"raw_affiliation_string":"General Electric Global Research","institution_ids":["https://openalex.org/I4210092162"]},{"raw_affiliation_string":"General Electric - Global Research","institution_ids":["https://openalex.org/I1332737386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073100574","display_name":"David B. Knoester","orcid":null},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David B. Knoester","raw_affiliation_strings":["Michigan State University"],"affiliations":[{"raw_affiliation_string":"Michigan State University","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036003594","display_name":"Brian D. Connelly","orcid":"https://orcid.org/0000-0002-9948-0379"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian D. Connelly","raw_affiliation_strings":["Michigan State University"],"affiliations":[{"raw_affiliation_string":"Michigan State University","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091655483","display_name":"Christopher M. Waters","orcid":"https://orcid.org/0000-0003-2336-7836"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher M. Waters","raw_affiliation_strings":["Michigan State University"],"affiliations":[{"raw_affiliation_string":"Michigan State University","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017795809","display_name":"Philip K. McKinley","orcid":null},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Philip K. McKinley","raw_affiliation_strings":["Michigan State University"],"affiliations":[{"raw_affiliation_string":"Michigan State University","institution_ids":["https://openalex.org/I87216513"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5051547805"],"corresponding_institution_ids":["https://openalex.org/I1332737386","https://openalex.org/I4210092162"],"apc_list":null,"apc_paid":null,"fwci":0.6723,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.68870225,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"18","issue":"3","first_page":"291","last_page":"310"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/quorum-sensing","display_name":"Quorum sensing","score":0.9401223659515381},{"id":"https://openalex.org/keywords/quorum-quenching","display_name":"Quorum Quenching","score":0.8656193017959595},{"id":"https://openalex.org/keywords/biofilm","display_name":"Biofilm","score":0.7640246152877808},{"id":"https://openalex.org/keywords/evolvability","display_name":"Evolvability","score":0.7471351623535156},{"id":"https://openalex.org/keywords/virulence","display_name":"Virulence","score":0.682025671005249},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6563156843185425},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.578557014465332},{"id":"https://openalex.org/keywords/mutant","display_name":"Mutant","score":0.574907124042511},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.571165919303894},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.526166558265686},{"id":"https://openalex.org/keywords/experimental-evolution","display_name":"Experimental evolution","score":0.4206054210662842},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3212663531303406},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1705460548400879}],"concepts":[{"id":"https://openalex.org/C118687296","wikidata":"https://www.wikidata.org/wiki/Q905754","display_name":"Quorum sensing","level":4,"score":0.9401223659515381},{"id":"https://openalex.org/C2908737351","wikidata":"https://www.wikidata.org/wiki/Q905754","display_name":"Quorum Quenching","level":5,"score":0.8656193017959595},{"id":"https://openalex.org/C58123911","wikidata":"https://www.wikidata.org/wiki/Q467410","display_name":"Biofilm","level":3,"score":0.7640246152877808},{"id":"https://openalex.org/C176147130","wikidata":"https://www.wikidata.org/wiki/Q909622","display_name":"Evolvability","level":2,"score":0.7471351623535156},{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.682025671005249},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6563156843185425},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.578557014465332},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.574907124042511},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.571165919303894},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.526166558265686},{"id":"https://openalex.org/C87590526","wikidata":"https://www.wikidata.org/wiki/Q3592884","display_name":"Experimental evolution","level":3,"score":0.4206054210662842},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3212663531303406},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1705460548400879},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053038","descriptor_name":"Quorum Sensing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053038","descriptor_name":"Quorum Sensing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053038","descriptor_name":"Quorum Sensing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053038","descriptor_name":"Quorum Sensing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1162/artl_a_00066","is_oa":false,"landing_page_url":"https://doi.org/10.1162/artl_a_00066","pdf_url":null,"source":{"id":"https://openalex.org/S2181302","display_name":"Artificial Life","issn_l":"1064-5462","issn":["1064-5462","1530-9185"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315718","host_organization_name":"The MIT Press","host_organization_lineage":["https://openalex.org/P4310315718"],"host_organization_lineage_names":["The MIT Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Life","raw_type":"journal-article"},{"id":"pmid:22662911","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22662911","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial life","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.660.2324","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.660.2324","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bconnelly.net/wp-content/papercite-data/pdf/beckmann2012evolution.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:3107139","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4138831","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320307758","display_name":"Eli Lilly and Company","ror":"https://ror.org/01qat3289"},{"id":"https://openalex.org/F4320310016","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993"},{"id":"https://openalex.org/F4320337398","display_name":"Division of Biological Infrastructure","ror":"https://ror.org/04qn9mx93"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":68,"referenced_works":["https://openalex.org/W170259030","https://openalex.org/W1509816200","https://openalex.org/W1607589803","https://openalex.org/W1895584462","https://openalex.org/W1927570869","https://openalex.org/W1934181521","https://openalex.org/W1980352067","https://openalex.org/W1982269466","https://openalex.org/W1983153145","https://openalex.org/W1983920923","https://openalex.org/W1984529935","https://openalex.org/W1995340407","https://openalex.org/W2002276562","https://openalex.org/W2005946215","https://openalex.org/W2013664532","https://openalex.org/W2017925150","https://openalex.org/W2018917527","https://openalex.org/W2022056695","https://openalex.org/W2022515934","https://openalex.org/W2026873843","https://openalex.org/W2032090023","https://openalex.org/W2044927170","https://openalex.org/W2046050098","https://openalex.org/W2049242968","https://openalex.org/W2054949696","https://openalex.org/W2058454385","https://openalex.org/W2058571049","https://openalex.org/W2059226812","https://openalex.org/W2059685380","https://openalex.org/W2060816398","https://openalex.org/W2067064614","https://openalex.org/W2072590703","https://openalex.org/W2080936059","https://openalex.org/W2087506438","https://openalex.org/W2098626852","https://openalex.org/W2098906108","https://openalex.org/W2104537952","https://openalex.org/W2110302495","https://openalex.org/W2111008262","https://openalex.org/W2118833985","https://openalex.org/W2122836009","https://openalex.org/W2125002041","https://openalex.org/W2126922170","https://openalex.org/W2131036374","https://openalex.org/W2131869707","https://openalex.org/W2136294927","https://openalex.org/W2136665929","https://openalex.org/W2137092408","https://openalex.org/W2144640625","https://openalex.org/W2147276070","https://openalex.org/W2148456801","https://openalex.org/W2151154410","https://openalex.org/W2164211912","https://openalex.org/W2165762396","https://openalex.org/W2167637231","https://openalex.org/W2169415577","https://openalex.org/W2169696772","https://openalex.org/W2170784505","https://openalex.org/W2171616025","https://openalex.org/W2195226892","https://openalex.org/W2260926450","https://openalex.org/W2517585024","https://openalex.org/W2541518681","https://openalex.org/W2810173704","https://openalex.org/W4246022028","https://openalex.org/W4248819957","https://openalex.org/W4254239544","https://openalex.org/W6888962595"],"related_works":["https://openalex.org/W2056086916","https://openalex.org/W2381115305","https://openalex.org/W1965088110","https://openalex.org/W4210894823","https://openalex.org/W2375157673","https://openalex.org/W4310809262","https://openalex.org/W2752831188","https://openalex.org/W2058965595","https://openalex.org/W2087735873","https://openalex.org/W2136376928"],"abstract_inverted_index":{"Quorum":[0],"sensing":[1],"(QS)":[2],"is":[3],"a":[4,66,115,164,229],"collective":[5],"behavior":[6],"whereby":[7],"actions":[8],"of":[9,15,25,31,37,41,48,61,112,117,125,170,175,207,214,237],"individuals":[10],"depend":[11],"on":[12,101,128],"the":[13,16,35,123,134,147,155,168,173,201,205,212,233],"density":[14],"surrounding":[17],"population.":[18],"Bacteria":[19],"use":[20],"QS":[21,109,148,171,178],"to":[22,56,69,145,185,231],"trigger":[23],"secretion":[24],"digestive":[26],"enzymes,":[27],"formation":[28],"and":[29,95,121,172,235],"destruction":[30],"biofilms,":[32],"and,":[33],"in":[34,110,142],"case":[36],"pathogenic":[38],"organisms,":[39,114],"expression":[40],"virulence":[42],"factors":[43],"that":[44,50,87,139,154,223],"cause":[45],"disease.":[46],"Investigations":[47],"mechanisms":[49],"prevent":[51],"or":[52,80],"disrupt":[53,146],"QS,":[54,238],"referred":[55],"as":[57,228],"quorum":[58,93,126,186,194],"quenching,":[59],"are":[60,161],"interest":[62],"because":[63],"they":[64],"provide":[65],"new":[67],"alternative":[68],"antibiotics":[70,76],"for":[71,247],"treating":[72],"bacterial":[73],"infections.":[74],"Traditional":[75],"either":[77],"kill":[78],"bacteria":[79],"inhibit":[81],"their":[82],"growth,":[83],"producing":[84],"selective":[85],"pressures":[86],"promote":[88],"resistant":[89],"strains.":[90],"In":[91,104],"contrast,":[92],"quenching":[94,127],"other":[96],"so-called":[97],"anti-infective":[98,248],"strategies":[99],"focus":[100],"altering":[102],"behavior.":[103,179],"this":[105],"article":[106],"we":[107,132,181],"evolve":[108],"populations":[111,135,189],"digital":[113,224],"type":[116],"self-replicating":[118],"computer":[119],"program,":[120],"investigate":[122],"effects":[124],"these":[129,159],"populations.":[130],"Specifically,":[131],"injected":[133],"with":[136],"mutant":[137,215],"organisms":[138,225],"were":[140],"impaired":[141],"selected":[143],"ways":[144],"process.":[149],"The":[150],"experimental":[151],"results":[152,221],"indicate":[153],"rate":[156,213],"at":[157,195,244],"which":[158],"mutants":[160],"introduced":[162],"into":[163],"population":[165],"influences":[166],"both":[167],"evolvability":[169],"persistence":[174],"an":[176],"existing":[177],"Surprisingly,":[180],"also":[182],"observed":[183],"resistance":[184,191,208],"quenching.":[187],"Effectively,":[188],"evolved":[190],"by":[192],"reaching":[193],"lower":[196],"cell":[197],"densities":[198],"than":[199],"did":[200],"parent":[202],"strain.":[203],"Moreover,":[204],"level":[206],"was":[209],"highest":[210],"when":[211],"introduction":[216],"increased":[217],"over":[218],"time.":[219],"These":[220],"show":[222],"can":[226],"serve":[227],"model":[230],"study":[232],"evolution":[234],"disruption":[236],"potentially":[239],"informing":[240],"wet-lab":[241],"studies":[242],"aimed":[243],"identifying":[245],"targets":[246],"development.":[249]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
