{"id":"https://openalex.org/W2147276070","doi":"https://doi.org/10.1162/106454604773563612","title":"Avida: A Software Platform for Research in Computational Evolutionary Biology","display_name":"Avida: A Software Platform for Research in Computational Evolutionary Biology","publication_year":2004,"publication_date":"2004-03-01","ids":{"openalex":"https://openalex.org/W2147276070","doi":"https://doi.org/10.1162/106454604773563612","mag":"2147276070","pmid":"https://pubmed.ncbi.nlm.nih.gov/15107231"},"language":"en","primary_location":{"id":"doi:10.1162/106454604773563612","is_oa":false,"landing_page_url":"https://doi.org/10.1162/106454604773563612","pdf_url":null,"source":{"id":"https://openalex.org/S2181302","display_name":"Artificial Life","issn_l":"1064-5462","issn":["1064-5462","1530-9185"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315718","host_organization_name":"The MIT Press","host_organization_lineage":["https://openalex.org/P4310315718"],"host_organization_lineage_names":["The MIT Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Life","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026353119","display_name":"Charles Ofria","orcid":"https://orcid.org/0000-0003-2924-1732"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Charles Ofria","raw_affiliation_strings":["Department of Computer Science and Engineering Michigan State University East Lansing, MI 48824"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering Michigan State University East Lansing, MI 48824","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070411498","display_name":"Claus O. Wilke","orcid":"https://orcid.org/0000-0002-7470-9261"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Claus O. Wilke","raw_affiliation_strings":["Digital Life Laboratory 136-93 California Institute of Technology, Pasadena, CA 91125","Digital Life Laboratory 136-93, California Institute of Technology, Pasadena, CA#TAB#"],"affiliations":[{"raw_affiliation_string":"Digital Life Laboratory 136-93 California Institute of Technology, Pasadena, CA 91125","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Digital Life Laboratory 136-93, California Institute of Technology, Pasadena, CA#TAB#","institution_ids":["https://openalex.org/I122411786"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5026353119"],"corresponding_institution_ids":["https://openalex.org/I87216513"],"apc_list":null,"apc_paid":null,"fwci":7.7762,"has_fulltext":false,"cited_by_count":366,"citation_normalized_percentile":{"value":0.9787707,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"10","issue":"2","first_page":"191","last_page":"229"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11252","display_name":"Evolutionary Game Theory and Cooperation","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/3312","display_name":"Sociology and Political Science"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9796000123023987,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7572567462921143},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6602804064750671},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5969082117080688},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5666799545288086},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.5192013382911682},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.34257346391677856},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.20843341946601868}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7572567462921143},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6602804064750671},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5969082117080688},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5666799545288086},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5192013382911682},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.34257346391677856},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.20843341946601868}],"mesh":[{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1162/106454604773563612","is_oa":false,"landing_page_url":"https://doi.org/10.1162/106454604773563612","pdf_url":null,"source":{"id":"https://openalex.org/S2181302","display_name":"Artificial Life","issn_l":"1064-5462","issn":["1064-5462","1530-9185"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315718","host_organization_name":"The MIT Press","host_organization_lineage":["https://openalex.org/P4310315718"],"host_organization_lineage_names":["The MIT Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Life","raw_type":"journal-article"},{"id":"pmid:15107231","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15107231","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial life","raw_type":null},{"id":"pmh:oai:authors.library.caltech.edu:13705","is_oa":false,"landing_page_url":"https://authors.library.caltech.edu/13705/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.136.7943","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.136.7943","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cse.msu.edu/~ofria/home/pubs/papers/AvidaIntro-ALife.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.211.8981","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.211.8981","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://wexler.free.fr/library/files/ofria%20(2004)%20avida.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.561.2684","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.561.2684","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://authors.library.caltech.edu/13705/1/OFRal04.pdf","raw_type":"text"},{"id":"mag:3186293301","is_oa":false,"landing_page_url":"https://europepmc.org/article/PMC/PMC7115006","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W26772505","https://openalex.org/W1493919779","https://openalex.org/W1532223965","https://openalex.org/W1540564203","https://openalex.org/W1542298354","https://openalex.org/W1566107011","https://openalex.org/W1568906816","https://openalex.org/W1583030352","https://openalex.org/W1584428002","https://openalex.org/W1585581436","https://openalex.org/W1602132379","https://openalex.org/W1712683603","https://openalex.org/W1749356670","https://openalex.org/W1847861803","https://openalex.org/W1925508000","https://openalex.org/W1979757593","https://openalex.org/W1982394538","https://openalex.org/W1983138148","https://openalex.org/W1983153145","https://openalex.org/W1996458622","https://openalex.org/W2005946215","https://openalex.org/W2021764551","https://openalex.org/W2046050098","https://openalex.org/W2049489115","https://openalex.org/W2056066754","https://openalex.org/W2057919862","https://openalex.org/W2061700929","https://openalex.org/W2078007789","https://openalex.org/W2078347845","https://openalex.org/W2089307705","https://openalex.org/W2095131015","https://openalex.org/W2096624534","https://openalex.org/W2098158317","https://openalex.org/W2104554704","https://openalex.org/W2112945902","https://openalex.org/W2114890821","https://openalex.org/W2144669098","https://openalex.org/W2145274841","https://openalex.org/W2146397496","https://openalex.org/W2147123807","https://openalex.org/W2153585895","https://openalex.org/W2155810228","https://openalex.org/W2158501510","https://openalex.org/W2159830634","https://openalex.org/W2161854763","https://openalex.org/W2162170584","https://openalex.org/W2167053763","https://openalex.org/W2170169166","https://openalex.org/W2180641318","https://openalex.org/W2953138968","https://openalex.org/W3025136633","https://openalex.org/W3106045900","https://openalex.org/W4248257527"],"related_works":["https://openalex.org/W1513606646","https://openalex.org/W2385151830","https://openalex.org/W2115083410","https://openalex.org/W2387508864","https://openalex.org/W1622341139","https://openalex.org/W2380805646","https://openalex.org/W3003915767","https://openalex.org/W3194228230","https://openalex.org/W2015462925","https://openalex.org/W1869907491"],"abstract_inverted_index":{"Avida":[0,44],"is":[1,45],"a":[2,22],"software":[3],"platform":[4],"for":[5],"experiments":[6,60],"with":[7],"self-replicating":[8],"and":[9,20,28,33,53,66],"evolving":[10],"computer":[11],"programs.":[12],"It":[13],"provides":[14],"detailed":[15],"control":[16],"over":[17],"experimental":[18,35],"settings":[19],"protocols,":[21],"large":[23],"array":[24],"of":[25],"measurement":[26],"tools,":[27],"sophisticated":[29],"methods":[30],"to":[31],"analyze":[32],"post-process":[34],"data.":[36],"We":[37,56],"explain":[38,58],"the":[39],"general":[40],"principles":[41],"on":[42],"which":[43],"built,":[46],"as":[47,49],"well":[48],"its":[50],"main":[51],"components":[52],"their":[54],"interactions.":[55],"also":[57],"how":[59],"are":[61],"set":[62],"up,":[63],"carried":[64],"out,":[65],"analyzed.":[67]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":18},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":23},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":14},{"year":2018,"cited_by_count":16},{"year":2017,"cited_by_count":27},{"year":2016,"cited_by_count":17},{"year":2015,"cited_by_count":13},{"year":2014,"cited_by_count":29},{"year":2013,"cited_by_count":26},{"year":2012,"cited_by_count":32}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
