{"id":"https://openalex.org/W2172053542","doi":"https://doi.org/10.1162/0899766054322973","title":"Analyzing Functional Connectivity Using a Network Likelihood Model of Ensemble Neural Spiking Activity","display_name":"Analyzing Functional Connectivity Using a Network Likelihood Model of Ensemble Neural Spiking Activity","publication_year":2005,"publication_date":"2005-07-02","ids":{"openalex":"https://openalex.org/W2172053542","doi":"https://doi.org/10.1162/0899766054322973","mag":"2172053542","pmid":"https://pubmed.ncbi.nlm.nih.gov/15992486"},"language":"en","primary_location":{"id":"doi:10.1162/0899766054322973","is_oa":false,"landing_page_url":"https://doi.org/10.1162/0899766054322973","pdf_url":null,"source":{"id":"https://openalex.org/S207023548","display_name":"Neural Computation","issn_l":"0899-7667","issn":["0899-7667","1530-888X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315718","host_organization_name":"The MIT Press","host_organization_lineage":["https://openalex.org/P4310315718"],"host_organization_lineage_names":["The MIT Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neural Computation","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048509636","display_name":"Murat Okatan","orcid":"https://orcid.org/0000-0002-0064-6747"},"institutions":[{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Murat Okatan","raw_affiliation_strings":["Neuroscience Statistics Research Laboratory, Department of Anesthesia and Critical Care, Massachusetts General Hospital, Boston, MA 02114-2698, U.S.A.,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neuroscience Statistics Research Laboratory, Department of Anesthesia and Critical Care, Massachusetts General Hospital, Boston, MA 02114-2698, U.S.A.,","institution_ids":["https://openalex.org/I4210087915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115594439","display_name":"Matthew A. Wilson","orcid":null},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Matthew A. Wilson","raw_affiliation_strings":["Picower Center for Learning and Memory, Riken-MIT Neuroscience Research Center, Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, U.S.A.,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Picower Center for Learning and Memory, Riken-MIT Neuroscience Research Center, Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, U.S.A.,","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030321614","display_name":"Emery N. Brown","orcid":"https://orcid.org/0000-0003-2668-7819"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Emery N. Brown","raw_affiliation_strings":["Neuroscience Statistics Research Laboratory, Department of Anesthesia and Critical Care, Massachusetts General Hospital, and Division of Health Sciences and Technology, Harvard Medical School/Massachusetts Institute of Technology, Boston, MA 02114-2698, U.S.A.,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neuroscience Statistics Research Laboratory, Department of Anesthesia and Critical Care, Massachusetts General Hospital, and Division of Health Sciences and Technology, Harvard Medical School/Massachusetts Institute of Technology, Boston, MA 02114-2698, U.S.A.,","institution_ids":["https://openalex.org/I136199984","https://openalex.org/I63966007","https://openalex.org/I4210087915"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5030321614","https://openalex.org/A5048509636","https://openalex.org/A5115594439"],"corresponding_institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I63966007"],"apc_list":null,"apc_paid":null,"fwci":6.0997,"has_fulltext":false,"cited_by_count":265,"citation_normalized_percentile":{"value":0.97090494,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"17","issue":"9","first_page":"1927","last_page":"1961"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10077","display_name":"Neuroscience and Neuropharmacology Research","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11513","display_name":"stochastic dynamics and bifurcation","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/spike","display_name":"Spike (software development)","score":0.6494489908218384},{"id":"https://openalex.org/keywords/multiplicative-function","display_name":"Multiplicative function","score":0.5878515839576721},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5605416297912598},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4872928857803345},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4615360200405121},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.45895299315452576},{"id":"https://openalex.org/keywords/spike-train","display_name":"Spike train","score":0.456729918718338},{"id":"https://openalex.org/keywords/spiking-neural-network","display_name":"Spiking neural network","score":0.4255954623222351},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.40197068452835083},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21818813681602478}],"concepts":[{"id":"https://openalex.org/C2781390188","wikidata":"https://www.wikidata.org/wiki/Q25203449","display_name":"Spike (software development)","level":2,"score":0.6494489908218384},{"id":"https://openalex.org/C42747912","wikidata":"https://www.wikidata.org/wiki/Q1048447","display_name":"Multiplicative function","level":2,"score":0.5878515839576721},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5605416297912598},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4872928857803345},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4615360200405121},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.45895299315452576},{"id":"https://openalex.org/C2909946758","wikidata":"https://www.wikidata.org/wiki/Q194277","display_name":"Spike train","level":3,"score":0.456729918718338},{"id":"https://openalex.org/C11731999","wikidata":"https://www.wikidata.org/wiki/Q9067355","display_name":"Spiking neural network","level":3,"score":0.4255954623222351},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.40197068452835083},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21818813681602478},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000200","descriptor_name":"Action Potentials","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000200","descriptor_name":"Action Potentials","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000200","descriptor_name":"Action Potentials","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006624","descriptor_name":"Hippocampus","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006624","descriptor_name":"Hippocampus","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006624","descriptor_name":"Hippocampus","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009415","descriptor_name":"Nerve Net","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009415","descriptor_name":"Nerve Net","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009415","descriptor_name":"Nerve Net","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1162/0899766054322973","is_oa":false,"landing_page_url":"https://doi.org/10.1162/0899766054322973","pdf_url":null,"source":{"id":"https://openalex.org/S207023548","display_name":"Neural Computation","issn_l":"0899-7667","issn":["0899-7667","1530-888X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315718","host_organization_name":"The MIT Press","host_organization_lineage":["https://openalex.org/P4310315718"],"host_organization_lineage_names":["The MIT Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neural Computation","raw_type":"journal-article"},{"id":"pmid:15992486","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15992486","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neural computation","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5565534203","display_name":null,"funder_award_id":"MH-61637","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G5639204248","display_name":null,"funder_award_id":"MH-59733","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G6078818810","display_name":null,"funder_award_id":"DA-015644","funder_id":"https://openalex.org/F4320337347","funder_display_name":"National Institute on Drug Abuse"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"},{"id":"https://openalex.org/F4320337347","display_name":"National Institute on Drug Abuse","ror":"https://ror.org/00fq5cm18"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":72,"referenced_works":["https://openalex.org/W1490229695","https://openalex.org/W1501652345","https://openalex.org/W1544729927","https://openalex.org/W1567636909","https://openalex.org/W1580530921","https://openalex.org/W1586180564","https://openalex.org/W1586810339","https://openalex.org/W1605645356","https://openalex.org/W1630370318","https://openalex.org/W1826201647","https://openalex.org/W1945974928","https://openalex.org/W1965499003","https://openalex.org/W1966246587","https://openalex.org/W1969769253","https://openalex.org/W1982993690","https://openalex.org/W1991266025","https://openalex.org/W1999599673","https://openalex.org/W1999703861","https://openalex.org/W2000775105","https://openalex.org/W2004060876","https://openalex.org/W2004191028","https://openalex.org/W2004725045","https://openalex.org/W2009556964","https://openalex.org/W2010825647","https://openalex.org/W2014744085","https://openalex.org/W2021336609","https://openalex.org/W2021816442","https://openalex.org/W2030368794","https://openalex.org/W2030686597","https://openalex.org/W2032161966","https://openalex.org/W2052515926","https://openalex.org/W2055382415","https://openalex.org/W2059184835","https://openalex.org/W2060899536","https://openalex.org/W2069606193","https://openalex.org/W2071290167","https://openalex.org/W2074810004","https://openalex.org/W2075618168","https://openalex.org/W2076735150","https://openalex.org/W2084793648","https://openalex.org/W2086374092","https://openalex.org/W2087618221","https://openalex.org/W2087886757","https://openalex.org/W2088256340","https://openalex.org/W2095504054","https://openalex.org/W2097145786","https://openalex.org/W2098487713","https://openalex.org/W2105756523","https://openalex.org/W2110242299","https://openalex.org/W2115920155","https://openalex.org/W2118458514","https://openalex.org/W2118925328","https://openalex.org/W2119565218","https://openalex.org/W2119624849","https://openalex.org/W2120525066","https://openalex.org/W2121428423","https://openalex.org/W2142373488","https://openalex.org/W2148694408","https://openalex.org/W2151297684","https://openalex.org/W2153836149","https://openalex.org/W2164960199","https://openalex.org/W2169183612","https://openalex.org/W2211742962","https://openalex.org/W2266946488","https://openalex.org/W2313953460","https://openalex.org/W2398741376","https://openalex.org/W2401175449","https://openalex.org/W2441711436","https://openalex.org/W2797177778","https://openalex.org/W2904376496","https://openalex.org/W3083591227","https://openalex.org/W4235452191"],"related_works":["https://openalex.org/W2383615955","https://openalex.org/W4306175885","https://openalex.org/W4312604567","https://openalex.org/W2329992713","https://openalex.org/W2062974934","https://openalex.org/W2187212244","https://openalex.org/W1558157446","https://openalex.org/W4297619707","https://openalex.org/W2542565870","https://openalex.org/W2583316550"],"abstract_inverted_index":{"Analyzing":[0],"the":[1,45,120,123,131,144,155,162,165,174,184],"dependencies":[2],"between":[3],"spike":[4,113,134],"trains":[5,114,135],"is":[6,23,61],"an":[7,53,62,108,137,180],"important":[8],"step":[9],"in":[10,15,73],"understanding":[11],"how":[12],"neurons":[13,28],"work":[14],"concert":[16],"to":[17,98],"represent":[18],"biological":[19],"signals.":[20],"Usually":[21],"this":[22,86],"done":[24],"for":[25,44,67,183],"pairs":[26],"of":[27,48,55,58,75,85,110,117,133,139,157,164,186],"at":[29],"a":[30,68,82,90,95,103,147],"time":[31],"using":[32],"correlation-based":[33],"techniques.":[34],"Chornoboy,":[35],"Schramm,":[36],"and":[37,102,127,150],"Karr":[38],"(1988)":[39],"proposed":[40],"maximum":[41],"likelihood":[42,70,176],"methods":[43,60],"simultaneous":[46],"analysis":[47,109,132,185],"multiple":[49],"pair-wise":[50],"interactions":[51],"among":[52],"ensemble":[54,138,187],"neurons.":[56],"One":[57],"these":[59],"iterative,":[63],"continuous-time":[64],"estimation":[65],"algorithm":[66,87,121,145],"network":[69,175],"model":[71,177],"formulated":[72],"terms":[74],"multiplicative":[76],"conditional":[77],"intensity":[78],"functions.":[79],"We":[80],"devised":[81],"discrete-time":[83],"version":[84],"that":[88,173],"includes":[89],"new,":[91],"efficient":[92,181],"computational":[93],"strategy,":[94],"principled":[96,104],"method":[97],"compute":[99],"starting":[100],"values,":[101],"stopping":[105],"criterion.":[106],"In":[107,130],"simulated":[111],"neural":[112],"from":[115,136],"ensembles":[116],"interacting":[118],"neurons,":[119],"recovered":[122],"correct":[124],"connectivity":[125,148],"matrices":[126],"interaction":[128,151],"parameters.":[129],"rat":[140],"hippocampal":[141],"place":[142],"cells,":[143],"identified":[146],"matrix":[149],"parameters":[152],"consistent":[153],"with":[154],"pattern":[156],"conjoined":[158],"firing":[159],"predicted":[160],"by":[161],"overlap":[163],"neurons'":[166],"spatial":[167],"receptive":[168],"fields.":[169],"These":[170],"results":[171],"suggest":[172],"can":[178],"be":[179],"tool":[182],"spiking":[188],"activity.":[189]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":16},{"year":2015,"cited_by_count":16},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":14},{"year":2012,"cited_by_count":18}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
