{"id":"https://openalex.org/W7141983576","doi":"https://doi.org/10.1155/int/7155544","title":"Uncovering Regulatory Networks Through Residual Graph Learning of circRNA\u2013miRNA Interactions","display_name":"Uncovering Regulatory Networks Through Residual Graph Learning of circRNA\u2013miRNA Interactions","publication_year":2026,"publication_date":"2026-01-01","ids":{"openalex":"https://openalex.org/W7141983576","doi":"https://doi.org/10.1155/int/7155544"},"language":"en","primary_location":{"id":"doi:10.1155/int/7155544","is_oa":true,"landing_page_url":"https://doi.org/10.1155/int/7155544","pdf_url":null,"source":{"id":"https://openalex.org/S57950554","display_name":"International Journal of Intelligent Systems","issn_l":"0884-8173","issn":["0884-8173","1098-111X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Intelligent Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1155/int/7155544","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5130854832","display_name":"Murtada K. Elbashir","orcid":null},"institutions":[{"id":"https://openalex.org/I199702508","display_name":"Jouf University","ror":"https://ror.org/02zsyt821","country_code":"SA","type":"education","lineage":["https://openalex.org/I199702508"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Murtada K. Elbashir","raw_affiliation_strings":["Department of Information Systems ,  College of Computer and Information Sciences ,  Jouf University ,  Sakaka ,  72441 ,  Saudi Arabia , ju.edu.sa"],"raw_orcid":"https://orcid.org/0000-0003-3431-6604","affiliations":[{"raw_affiliation_string":"Department of Information Systems ,  College of Computer and Information Sciences ,  Jouf University ,  Sakaka ,  72441 ,  Saudi Arabia , ju.edu.sa","institution_ids":["https://openalex.org/I199702508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5130865245","display_name":"Madallah Alruwaili","orcid":null},"institutions":[{"id":"https://openalex.org/I199702508","display_name":"Jouf University","ror":"https://ror.org/02zsyt821","country_code":"SA","type":"education","lineage":["https://openalex.org/I199702508"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Madallah Alruwaili","raw_affiliation_strings":["Department of Computer Engineering and Networks ,  College of Computer and Information Sciences ,  Jouf University ,  Sakaka , Aljouf,  Saudi Arabia , ju.edu.sa"],"raw_orcid":"https://orcid.org/0000-0002-5198-5730","affiliations":[{"raw_affiliation_string":"Department of Computer Engineering and Networks ,  College of Computer and Information Sciences ,  Jouf University ,  Sakaka , Aljouf,  Saudi Arabia , ju.edu.sa","institution_ids":["https://openalex.org/I199702508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021124183","display_name":"Mahmood Mohamed","orcid":"https://orcid.org/0000-0002-9658-0972"},"institutions":[{"id":"https://openalex.org/I145487455","display_name":"Cairo University","ror":"https://ror.org/03q21mh05","country_code":"EG","type":"education","lineage":["https://openalex.org/I145487455"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Mahmood Mohamed","raw_affiliation_strings":["Department of Information Systems and Technology ,  Faculty of Graduate Studies for Statistical Research ,  Cairo University ,  Giza ,  Egypt , cu.edu.eg"],"raw_orcid":"https://orcid.org/0000-0002-9658-0972","affiliations":[{"raw_affiliation_string":"Department of Information Systems and Technology ,  Faculty of Graduate Studies for Statistical Research ,  Cairo University ,  Giza ,  Egypt , cu.edu.eg","institution_ids":["https://openalex.org/I145487455"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5130865245"],"corresponding_institution_ids":["https://openalex.org/I199702508"],"apc_list":{"value":2700,"currency":"USD","value_usd":2700},"apc_paid":{"value":2700,"currency":"USD","value_usd":2700},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.24851403,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2026","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.33550000190734863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.33550000190734863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.26190000772476196,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.07010000199079514,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6344000101089478},{"id":"https://openalex.org/keywords/residual","display_name":"Residual","score":0.6277999877929688},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5989000201225281},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5911999940872192},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4359999895095825},{"id":"https://openalex.org/keywords/feature-learning","display_name":"Feature learning","score":0.37560001015663147}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8033999800682068},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6344000101089478},{"id":"https://openalex.org/C155512373","wikidata":"https://www.wikidata.org/wiki/Q287450","display_name":"Residual","level":2,"score":0.6277999877929688},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5989000201225281},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5911999940872192},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.578000009059906},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5672000050544739},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4359999895095825},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.37560001015663147},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3675999939441681},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34689998626708984},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.3418999910354614},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.3206000030040741},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.3156000077724457},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.29190000891685486},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.2773999869823456}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1155/int/7155544","is_oa":true,"landing_page_url":"https://doi.org/10.1155/int/7155544","pdf_url":null,"source":{"id":"https://openalex.org/S57950554","display_name":"International Journal of Intelligent Systems","issn_l":"0884-8173","issn":["0884-8173","1098-111X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Intelligent Systems","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1155/int/7155544","is_oa":true,"landing_page_url":"https://doi.org/10.1155/int/7155544","pdf_url":null,"source":{"id":"https://openalex.org/S57950554","display_name":"International Journal of Intelligent Systems","issn_l":"0884-8173","issn":["0884-8173","1098-111X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Intelligent Systems","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W2017919052","https://openalex.org/W2021969955","https://openalex.org/W2024248021","https://openalex.org/W2034305079","https://openalex.org/W2058835062","https://openalex.org/W2064165694","https://openalex.org/W2105686255","https://openalex.org/W2158698691","https://openalex.org/W2170505850","https://openalex.org/W2302185643","https://openalex.org/W2600581473","https://openalex.org/W2942409680","https://openalex.org/W2962756421","https://openalex.org/W2967043226","https://openalex.org/W2991094260","https://openalex.org/W2999309192","https://openalex.org/W3020855961","https://openalex.org/W3040043284","https://openalex.org/W3127238141","https://openalex.org/W3179572443","https://openalex.org/W3209048883","https://openalex.org/W4289860439","https://openalex.org/W4291825018","https://openalex.org/W4294908374","https://openalex.org/W4295814154","https://openalex.org/W4296394114","https://openalex.org/W4307432689","https://openalex.org/W4307502334","https://openalex.org/W4309366575","https://openalex.org/W4317951595","https://openalex.org/W4361017398","https://openalex.org/W4385288569","https://openalex.org/W4385564848","https://openalex.org/W4386248120","https://openalex.org/W4387576868","https://openalex.org/W4392453298","https://openalex.org/W4393380917","https://openalex.org/W4396808576","https://openalex.org/W4399691365","https://openalex.org/W4400390698","https://openalex.org/W4401482646","https://openalex.org/W4401485218","https://openalex.org/W4403733295","https://openalex.org/W4403809881","https://openalex.org/W4404219622","https://openalex.org/W4404260628","https://openalex.org/W4409783356","https://openalex.org/W4411246317","https://openalex.org/W4412638823","https://openalex.org/W4413557428","https://openalex.org/W4415221476","https://openalex.org/W6948116018"],"related_works":[],"abstract_inverted_index":{"Circular":[0],"RNAs":[1],"(circRNAs)":[2],"and":[3,12,21,36,73,91,111,143,151,157,176,180,191,198],"microRNAs":[4],"(miRNAs)":[5],"are":[6,15,43,80],"key":[7],"regulators":[8],"of":[9,27,89,121,172,184],"gene":[10],"expression,":[11],"their":[13],"interactions":[14,29],"involved":[16],"in":[17,82,99,130],"many":[18],"biological":[19,133,207],"processes":[20],"diseases.":[22],"Nevertheless,":[23],"the":[24,100,137,149,163,168,181,185],"experimental":[25,119],"validation":[26],"circRNA\u2013miRNA":[28],"(CMIs)":[30],"remains":[31],"challenging":[32],"due":[33],"to":[34,84],"resource":[35],"technical":[37],"constraints;":[38],"therefore,":[39],"robust":[40,110],"computational":[41],"models":[42,139],"essential":[44],"for":[45,59,115,205],"accurate":[46],"CMI":[47,116],"prediction.":[48,117],"This":[49],"paper":[50],"proposes":[51],"a":[52,202],"new":[53],"residual":[54,101],"graph":[55,64,102],"learning":[56,114],"framework":[57],"(RGLRE)":[58],"CMIs":[60],"prediction":[61,209],"using":[62],"role\u2010aware":[63,86],"embeddings.":[65],"RGLRE":[66,83,126,145],"combines":[67],"attention\u2010based":[68],"message":[69],"transmission,":[70],"DropEdge":[71],"regularization,":[72],"similarity\u2010based":[74],"hard":[75],"negative":[76],"sampling.":[77],"Role2Vec":[78],"embeddings":[79],"employed":[81],"provide":[85],"structural":[87],"representations":[88],"circRNA":[90],"miRNA":[92],"nodes,":[93],"which":[94],"support":[95],"stable":[96],"information":[97],"propagation":[98],"neural":[103],"network.":[104],"These":[105],"design":[106,197],"choices":[107],"enable":[108],"more":[109,128],"generalizable":[112],"feature":[113],"The":[118,194],"analysis":[120],"various":[122],"datasets":[123,153],"reveals":[124],"that":[125],"is":[127],"effective":[129],"capturing":[131],"complicated":[132],"dependencies":[134],"compared":[135],"with":[136,154],"existing":[138],"like":[140],"CMAGN,":[141],"BEROLECMI,":[142],"GAT.":[144],"was":[146],"evaluated":[147],"on":[148,174,178],"CMI\u20109905":[150,175],"CMI\u20109589":[152],"5\u2010fold":[155],"cross\u2010validation,":[156],"it":[158,201],"showed":[159,170],"better":[160],"results":[161],"than":[162],"current":[164],"techniques.":[165],"More":[166],"precisely,":[167],"model":[169,186],"accuracy":[171],"0.9115":[173],"0.9161":[177],"CMI\u20109589,":[179],"overall":[182],"score":[183],"consistently":[187],"obtained":[188],"high":[189],"AUROC":[190],"AUPR":[192],"values.":[193],"framework\u2019s":[195],"modular":[196],"scalability":[199],"make":[200],"promising":[203],"tool":[204],"broader":[206],"interaction":[208],"tasks.":[210]},"counts_by_year":[],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2026-03-29T00:00:00"}
