{"id":"https://openalex.org/W4403583705","doi":"https://doi.org/10.1155/2024/7914178","title":"Extreme Gradient Boosting Beats In\u2010Silico Identification of Proteins Potentially Associated With Alzheimer\u2019s","display_name":"Extreme Gradient Boosting Beats In\u2010Silico Identification of Proteins Potentially Associated With Alzheimer\u2019s","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4403583705","doi":"https://doi.org/10.1155/2024/7914178"},"language":"en","primary_location":{"id":"doi:10.1155/2024/7914178","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2024/7914178","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1155/2024/7914178","source":{"id":"https://openalex.org/S30680879","display_name":"Applied Computational Intelligence and Soft Computing","issn_l":"1687-9724","issn":["1687-9724","1687-9732"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Computational Intelligence and Soft Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1155/2024/7914178","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103951338","display_name":"Sadia Khalil","orcid":"https://orcid.org/0000-0001-8630-8046"},"institutions":[{"id":"https://openalex.org/I146840658","display_name":"University of Azad Jammu and Kashmir","ror":"https://ror.org/015566d55","country_code":"PK","type":"education","lineage":["https://openalex.org/I146840658"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Sadia Khalil","raw_affiliation_strings":["Computational Biology and Data Analysis Laboratory ,  Department of Computer Sciences & Information Technology ,  King Abdullah Campus ,  University of Azad Jammu & Kashmir ,  Muzaffarabad ,  13100 , Azad Jammu and Kashmir,  Pakistan ,  ajku.edu.pk"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology and Data Analysis Laboratory ,  Department of Computer Sciences & Information Technology ,  King Abdullah Campus ,  University of Azad Jammu & Kashmir ,  Muzaffarabad ,  13100 , Azad Jammu and Kashmir,  Pakistan ,  ajku.edu.pk","institution_ids":["https://openalex.org/I146840658"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012765005","display_name":"Wajid Arshad Abbasi","orcid":"https://orcid.org/0000-0001-7691-5715"},"institutions":[{"id":"https://openalex.org/I146840658","display_name":"University of Azad Jammu and Kashmir","ror":"https://ror.org/015566d55","country_code":"PK","type":"education","lineage":["https://openalex.org/I146840658"]}],"countries":["PK"],"is_corresponding":true,"raw_author_name":"Wajid Arshad Abbasi","raw_affiliation_strings":["Computational Biology and Data Analysis Laboratory ,  Department of Computer Sciences & Information Technology ,  King Abdullah Campus ,  University of Azad Jammu & Kashmir ,  Muzaffarabad ,  13100 , Azad Jammu and Kashmir,  Pakistan ,  ajku.edu.pk"],"raw_orcid":"https://orcid.org/0000-0001-7691-5715","affiliations":[{"raw_affiliation_string":"Computational Biology and Data Analysis Laboratory ,  Department of Computer Sciences & Information Technology ,  King Abdullah Campus ,  University of Azad Jammu & Kashmir ,  Muzaffarabad ,  13100 , Azad Jammu and Kashmir,  Pakistan ,  ajku.edu.pk","institution_ids":["https://openalex.org/I146840658"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101428833","display_name":"Syed Ali Abbas","orcid":null},"institutions":[{"id":"https://openalex.org/I146840658","display_name":"University of Azad Jammu and Kashmir","ror":"https://ror.org/015566d55","country_code":"PK","type":"education","lineage":["https://openalex.org/I146840658"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Syed Ali Abbas","raw_affiliation_strings":["Computational Biology and Data Analysis Laboratory ,  Department of Computer Sciences & Information Technology ,  King Abdullah Campus ,  University of Azad Jammu & Kashmir ,  Muzaffarabad ,  13100 , Azad Jammu and Kashmir,  Pakistan ,  ajku.edu.pk"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology and Data Analysis Laboratory ,  Department of Computer Sciences & Information Technology ,  King Abdullah Campus ,  University of Azad Jammu & Kashmir ,  Muzaffarabad ,  13100 , Azad Jammu and Kashmir,  Pakistan ,  ajku.edu.pk","institution_ids":["https://openalex.org/I146840658"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003144783","display_name":"Maryum Bibi","orcid":"https://orcid.org/0000-0001-9619-8565"},"institutions":[{"id":"https://openalex.org/I146840658","display_name":"University of Azad Jammu and Kashmir","ror":"https://ror.org/015566d55","country_code":"PK","type":"education","lineage":["https://openalex.org/I146840658"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Maryum Bibi","raw_affiliation_strings":["Computational Biology and Data Analysis Laboratory ,  Department of Computer Sciences & Information Technology ,  King Abdullah Campus ,  University of Azad Jammu & Kashmir ,  Muzaffarabad ,  13100 , Azad Jammu and Kashmir,  Pakistan ,  ajku.edu.pk"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology and Data Analysis Laboratory ,  Department of Computer Sciences & Information Technology ,  King Abdullah Campus ,  University of Azad Jammu & Kashmir ,  Muzaffarabad ,  13100 , Azad Jammu and Kashmir,  Pakistan ,  ajku.edu.pk","institution_ids":["https://openalex.org/I146840658"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077224800","display_name":"Saiqa Andleeb","orcid":"https://orcid.org/0000-0001-7888-6444"},"institutions":[{"id":"https://openalex.org/I146840658","display_name":"University of Azad Jammu and Kashmir","ror":"https://ror.org/015566d55","country_code":"PK","type":"education","lineage":["https://openalex.org/I146840658"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Saiqa Andleeb","raw_affiliation_strings":["Biotechnology Laboratory ,  Department of Zoology ,  King Abdullah Campus ,  University of Azad Jammu & Kashmir ,  Muzaffarabad ,  13100 ,  Pakistan ,  ajku.edu.pk"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Laboratory ,  Department of Zoology ,  King Abdullah Campus ,  University of Azad Jammu & Kashmir ,  Muzaffarabad ,  13100 ,  Pakistan ,  ajku.edu.pk","institution_ids":["https://openalex.org/I146840658"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5114340542","display_name":"Amsa Shabir","orcid":null},"institutions":[{"id":"https://openalex.org/I4210088086","display_name":"Capital University of Science and Technology","ror":"https://ror.org/004776246","country_code":"PK","type":"education","lineage":["https://openalex.org/I4210088086"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Amsa Shabir","raw_affiliation_strings":["Department of Software Engineering ,  Capital University of Science & Technology (CUST) ,  Islamabad ,  Pakistan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Software Engineering ,  Capital University of Science & Technology (CUST) ,  Islamabad ,  Pakistan","institution_ids":["https://openalex.org/I4210088086"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5012765005"],"corresponding_institution_ids":["https://openalex.org/I146840658"],"apc_list":{"value":900,"currency":"USD","value_usd":900},"apc_paid":{"value":900,"currency":"USD","value_usd":900},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.16213554,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2024","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7466368675231934},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.6994112133979797},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6000226736068726},{"id":"https://openalex.org/keywords/boosting","display_name":"Boosting (machine learning)","score":0.5938804745674133},{"id":"https://openalex.org/keywords/gradient-boosting","display_name":"Gradient boosting","score":0.518267810344696},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5158423781394958},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3834056854248047},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.36722153425216675},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.34670090675354004},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16770729422569275},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08746650815010071},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.06626719236373901}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7466368675231934},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6994112133979797},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6000226736068726},{"id":"https://openalex.org/C46686674","wikidata":"https://www.wikidata.org/wiki/Q466303","display_name":"Boosting (machine learning)","level":2,"score":0.5938804745674133},{"id":"https://openalex.org/C70153297","wikidata":"https://www.wikidata.org/wiki/Q5591907","display_name":"Gradient boosting","level":3,"score":0.518267810344696},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5158423781394958},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3834056854248047},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.36722153425216675},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.34670090675354004},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16770729422569275},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08746650815010071},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.06626719236373901},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1155/2024/7914178","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2024/7914178","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1155/2024/7914178","source":{"id":"https://openalex.org/S30680879","display_name":"Applied Computational Intelligence and Soft Computing","issn_l":"1687-9724","issn":["1687-9724","1687-9732"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Computational Intelligence and Soft Computing","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:fd5d4f4e7bf1422c8ab30fdd41b9372d","is_oa":true,"landing_page_url":"https://doaj.org/article/fd5d4f4e7bf1422c8ab30fdd41b9372d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Applied Computational Intelligence and Soft Computing, Vol 2024 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1155/2024/7914178","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2024/7914178","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1155/2024/7914178","source":{"id":"https://openalex.org/S30680879","display_name":"Applied Computational Intelligence and Soft Computing","issn_l":"1687-9724","issn":["1687-9724","1687-9732"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Computational Intelligence and Soft Computing","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4403583705.pdf","grobid_xml":"https://content.openalex.org/works/W4403583705.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1678356000","https://openalex.org/W1751995720","https://openalex.org/W1950993160","https://openalex.org/W1976526581","https://openalex.org/W1981409633","https://openalex.org/W2020816856","https://openalex.org/W2038963685","https://openalex.org/W2044757858","https://openalex.org/W2049349724","https://openalex.org/W2079219702","https://openalex.org/W2086320398","https://openalex.org/W2097532544","https://openalex.org/W2097606916","https://openalex.org/W2101676003","https://openalex.org/W2103017472","https://openalex.org/W2116240218","https://openalex.org/W2117540545","https://openalex.org/W2119821739","https://openalex.org/W2148512505","https://openalex.org/W2149450071","https://openalex.org/W2152592639","https://openalex.org/W2152830137","https://openalex.org/W2159126118","https://openalex.org/W2160257187","https://openalex.org/W2170283814","https://openalex.org/W2236655132","https://openalex.org/W2252523470","https://openalex.org/W2324728706","https://openalex.org/W2762906948","https://openalex.org/W2783889312","https://openalex.org/W2790630733","https://openalex.org/W2795419334","https://openalex.org/W2888964760","https://openalex.org/W2911964244","https://openalex.org/W2913334238","https://openalex.org/W2914546793","https://openalex.org/W2918556752","https://openalex.org/W2968912020","https://openalex.org/W3007853567","https://openalex.org/W3136918052","https://openalex.org/W3159663509","https://openalex.org/W4238843899","https://openalex.org/W4285132881","https://openalex.org/W4290603534","https://openalex.org/W4293512910","https://openalex.org/W4382397550","https://openalex.org/W4391946239"],"related_works":["https://openalex.org/W2967733078","https://openalex.org/W3204430031","https://openalex.org/W3137904399","https://openalex.org/W4310492845","https://openalex.org/W2885778889","https://openalex.org/W4310224730","https://openalex.org/W2766514146","https://openalex.org/W4289703016","https://openalex.org/W2885516856","https://openalex.org/W3094138326"],"abstract_inverted_index":{"Alzheimer\u2019s":[0,50,99],"disease":[1,9,28,56],"(AD)":[2],"is":[3,29,51,210],"a":[4,104,117,131],"chronic,":[5],"advanced":[6],"brain":[7,42],"sickness":[8],"that":[10,139],"slowly":[11],"destroys":[12],"memory":[13],"and":[14,57,60,78,83,101,166,170,201],"thinking":[15],"skills":[16],"and,":[17],"in":[18,49,98,128,175,192],"the":[19,21,32,41,55,62,93,157,186,208,213],"end,":[20],"ability":[22],"to":[23,53,58,123,184],"perform":[24],"routine":[25],"tasks.":[26],"This":[27],"caused":[30],"by":[31,91,143],"abnormal":[33],"clumping":[34],"of":[35,46,133,160,188],"proteins":[36,47,96,125],"such":[37,193],"as":[38],"amyloids":[39],"around":[40],"cells.":[43],"The":[44],"identification":[45],"involved":[48,97,127],"essential":[52],"understand":[54],"discover":[59],"design":[61],"drugs.":[63],"Experimental":[64],"processes":[65],"involving":[66],"in\u2010vitro":[67],"or":[68],"in\u2010vivo":[69],"experiments":[70],"for":[71,197],"this":[72,112,176],"purpose":[73],"are":[74],"very":[75],"time\u2010consuming,":[76],"laborious,":[77],"highly":[79],"costly.":[80],"However,":[81],"costly":[82],"tedious":[84],"experimental":[85],"procedures":[86],"can":[87],"be":[88],"performed":[89,181],"efficiently":[90],"targeting":[92],"most":[94],"probable":[95],"predicted":[100],"ranked":[102],"through":[103,163],"computational":[105],"method":[106],"with":[107,153,207],"better":[108],"generalization":[109,151],"accuracy.":[110],"In":[111],"study,":[113,177],"we":[114,136,178],"have":[115,137,179],"proposed":[116,141,204],"machine":[118],"learning":[119],"(ML)\u2013based":[120],"predictive":[121],"model":[122,142],"identify":[124,185],"potentially":[126],"Alzheimer\u2019s.":[129],"Through":[130,172],"series":[132],"simulation":[134],"studies,":[135],"shown":[138],"our":[140,203],"using":[144],"protein":[145],"sequence":[146],"information":[147],"only":[148],"gives":[149],"state\u2010of\u2010the\u2010art":[150],"performance":[152],"an":[154],"area":[155],"under":[156],"precision\u2010recall":[158],"curve":[159],"0.93":[161],"verified":[162],"various":[164],"ML\u2010centric":[165],"biologically":[167],"relevant":[168],"techniques":[169],"metrics.":[171],"data":[173],"mining":[174],"also":[180],"feature":[182,198],"analysis":[183],"role":[187],"individual":[189],"amino":[190],"acids":[191],"proteins.":[194],"Python":[195],"code":[196],"extraction,":[199],"training,":[200],"evaluating":[202],"models":[205],"together":[206],"dataset":[209],"available":[211],"at":[212],"URL:":[214],"https://sourceforge.net/projects/alzheimer-associated-proteins/files/":[215],".":[216]},"counts_by_year":[],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
