{"id":"https://openalex.org/W2591529598","doi":"https://doi.org/10.1155/2017/8721612","title":"Implementation of an Agent-Based Parallel Tissue Modelling Framework for the Intel MIC Architecture","display_name":"Implementation of an Agent-Based Parallel Tissue Modelling Framework for the Intel MIC Architecture","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2591529598","doi":"https://doi.org/10.1155/2017/8721612","mag":"2591529598"},"language":"en","primary_location":{"id":"doi:10.1155/2017/8721612","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2017/8721612","pdf_url":"http://downloads.hindawi.com/journals/sp/2017/8721612.pdf","source":{"id":"https://openalex.org/S166774750","display_name":"Scientific Programming","issn_l":"1058-9244","issn":["1058-9244","1875-919X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869","https://openalex.org/P4310320595"],"host_organization_lineage_names":["Hindawi Publishing Corporation","Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Scientific Programming","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"http://downloads.hindawi.com/journals/sp/2017/8721612.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068171102","display_name":"Maciej Cytowski","orcid":"https://orcid.org/0000-0002-0007-0979"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Maciej Cytowski","raw_affiliation_strings":["ICM, University of Warsaw, Pawi\u0144skiego 5a, Warszawa, Poland"],"raw_orcid":"https://orcid.org/0000-0002-0007-0979","affiliations":[{"raw_affiliation_string":"ICM, University of Warsaw, Pawi\u0144skiego 5a, Warszawa, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010973768","display_name":"Zuzanna Szyma\u0144ska","orcid":"https://orcid.org/0000-0002-2968-5627"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Zuzanna Szyma\u0144ska","raw_affiliation_strings":["ICM, University of Warsaw, Pawi\u0144skiego 5a, Warszawa, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICM, University of Warsaw, Pawi\u0144skiego 5a, Warszawa, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057784865","display_name":"Piotr W. Umi\u0144ski","orcid":null},"institutions":[{"id":"https://openalex.org/I4210155185","display_name":"Intel (Poland)","ror":"https://ror.org/05bx22c71","country_code":"PL","type":"company","lineage":["https://openalex.org/I1343180700","https://openalex.org/I4210155185"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Piotr Umi\u0144ski","raw_affiliation_strings":["Intel Technology Poland, S\u0142owackiego 173, Gda\u0144sk, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Intel Technology Poland, S\u0142owackiego 173, Gda\u0144sk, Poland","institution_ids":["https://openalex.org/I4210155185"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000265494","display_name":"Grzegorz Andrejczuk","orcid":null},"institutions":[{"id":"https://openalex.org/I4210155185","display_name":"Intel (Poland)","ror":"https://ror.org/05bx22c71","country_code":"PL","type":"company","lineage":["https://openalex.org/I1343180700","https://openalex.org/I4210155185"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Grzegorz Andrejczuk","raw_affiliation_strings":["Intel Technology Poland, S\u0142owackiego 173, Gda\u0144sk, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Intel Technology Poland, S\u0142owackiego 173, Gda\u0144sk, Poland","institution_ids":["https://openalex.org/I4210155185"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036274749","display_name":"Krzysztof Raszkowski","orcid":null},"institutions":[{"id":"https://openalex.org/I4210155185","display_name":"Intel (Poland)","ror":"https://ror.org/05bx22c71","country_code":"PL","type":"company","lineage":["https://openalex.org/I1343180700","https://openalex.org/I4210155185"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Krzysztof Raszkowski","raw_affiliation_strings":["Intel Technology Poland, S\u0142owackiego 173, Gda\u0144sk, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Intel Technology Poland, S\u0142owackiego 173, Gda\u0144sk, Poland","institution_ids":["https://openalex.org/I4210155185"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5068171102"],"corresponding_institution_ids":["https://openalex.org/I4654613"],"apc_list":{"value":2000,"currency":"USD","value_usd":2000},"apc_paid":{"value":2000,"currency":"USD","value_usd":2000},"fwci":1.0337,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.73859822,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"2017","issue":null,"first_page":"1","last_page":"11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11829","display_name":"Mathematical Biology Tumor Growth","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11829","display_name":"Mathematical Biology Tumor Growth","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9776999950408936,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12162","display_name":"Cellular Automata and Applications","score":0.9581999778747559,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/xeon-phi","display_name":"Xeon Phi","score":0.922982931137085},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8181349039077759},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7484156489372253},{"id":"https://openalex.org/keywords/massively-parallel","display_name":"Massively parallel","score":0.712933361530304},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.699989914894104},{"id":"https://openalex.org/keywords/xeon","display_name":"Xeon","score":0.6761199235916138},{"id":"https://openalex.org/keywords/coprocessor","display_name":"Coprocessor","score":0.6079770922660828},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.5970938205718994},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.49472519755363464},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.3953883647918701},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.35636988282203674},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.19682443141937256}],"concepts":[{"id":"https://openalex.org/C96972482","wikidata":"https://www.wikidata.org/wiki/Q1049168","display_name":"Xeon Phi","level":2,"score":0.922982931137085},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8181349039077759},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7484156489372253},{"id":"https://openalex.org/C190475519","wikidata":"https://www.wikidata.org/wiki/Q544384","display_name":"Massively parallel","level":2,"score":0.712933361530304},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.699989914894104},{"id":"https://openalex.org/C145108525","wikidata":"https://www.wikidata.org/wiki/Q656154","display_name":"Xeon","level":2,"score":0.6761199235916138},{"id":"https://openalex.org/C86111242","wikidata":"https://www.wikidata.org/wiki/Q859595","display_name":"Coprocessor","level":2,"score":0.6079770922660828},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.5970938205718994},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.49472519755363464},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.3953883647918701},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.35636988282203674},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.19682443141937256}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1155/2017/8721612","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2017/8721612","pdf_url":"http://downloads.hindawi.com/journals/sp/2017/8721612.pdf","source":{"id":"https://openalex.org/S166774750","display_name":"Scientific Programming","issn_l":"1058-9244","issn":["1058-9244","1875-919X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869","https://openalex.org/P4310320595"],"host_organization_lineage_names":["Hindawi Publishing Corporation","Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Scientific Programming","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:7ed816b046964112bf7acd5c94c2b092","is_oa":true,"landing_page_url":"https://doaj.org/article/7ed816b046964112bf7acd5c94c2b092","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scientific Programming, Vol 2017 (2017)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1155/2017/8721612","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2017/8721612","pdf_url":"http://downloads.hindawi.com/journals/sp/2017/8721612.pdf","source":{"id":"https://openalex.org/S166774750","display_name":"Scientific Programming","issn_l":"1058-9244","issn":["1058-9244","1875-919X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869","https://openalex.org/P4310320595"],"host_organization_lineage_names":["Hindawi Publishing Corporation","Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Scientific Programming","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1446169879","display_name":null,"funder_award_id":"#2014/15/B/ST6/05082","funder_id":"https://openalex.org/F4320322511","funder_display_name":"Narodowe Centrum Nauki"},{"id":"https://openalex.org/G3244438289","display_name":null,"funder_award_id":"2014/15/B/ST6/05082","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G5355706864","display_name":"Nowatorskie metody in\u017cynierii tkankowej wspomagaj\u0105ce gojenie i regeneracj\u0119 \u015bciegien i wi\u0119zade\u0142.","funder_award_id":"STRATEGMED1/233224/10/NCBR/2014","funder_id":"https://openalex.org/F4320335039","funder_display_name":"Narodowe Centrum Bada\u0144 i Rozwoju"},{"id":"https://openalex.org/G7165784318","display_name":null,"funder_award_id":"POIG.02.03.00.24-093/13","funder_id":"https://openalex.org/F4320335039","funder_display_name":"Narodowe Centrum Bada\u0144 i Rozwoju"},{"id":"https://openalex.org/G725046941","display_name":null,"funder_award_id":"2014/15/B/ST6/05082","funder_id":"https://openalex.org/F4320335039","funder_display_name":"Narodowe Centrum Bada\u0144 i Rozwoju"},{"id":"https://openalex.org/G7460129246","display_name":null,"funder_award_id":"STRATEGMED1/233224/10/NCBR/2014","funder_id":"https://openalex.org/F4320322511","funder_display_name":"Narodowe Centrum Nauki"},{"id":"https://openalex.org/G7498234186","display_name":null,"funder_award_id":"POIG.02.03.00.24-093/13","funder_id":"https://openalex.org/F4320322511","funder_display_name":"Narodowe Centrum Nauki"},{"id":"https://openalex.org/G771553913","display_name":null,"funder_award_id":"POIG.02.03.00.24-093/13","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G8595032133","display_name":null,"funder_award_id":"STRATEGMED1/233224/10/NCBR/2014","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"}],"funders":[{"id":"https://openalex.org/F4320322511","display_name":"Narodowe Centrum Nauki","ror":"https://ror.org/03ha2q922"},{"id":"https://openalex.org/F4320335039","display_name":"Narodowe Centrum Bada\u0144 i Rozwoju","ror":"https://ror.org/05pwfyy15"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2591529598.pdf","grobid_xml":"https://content.openalex.org/works/W2591529598.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W73153831","https://openalex.org/W115452890","https://openalex.org/W348433680","https://openalex.org/W761179351","https://openalex.org/W1485442037","https://openalex.org/W1893942944","https://openalex.org/W1967961367","https://openalex.org/W2014449669","https://openalex.org/W2058324879","https://openalex.org/W2075022716","https://openalex.org/W2086611351","https://openalex.org/W2100345558","https://openalex.org/W2127225632","https://openalex.org/W2138388932","https://openalex.org/W2160135160","https://openalex.org/W2163415630","https://openalex.org/W2187933120","https://openalex.org/W2209299333","https://openalex.org/W2272546316","https://openalex.org/W2508492666","https://openalex.org/W2793433781","https://openalex.org/W6965207771"],"related_works":["https://openalex.org/W2213533160","https://openalex.org/W2467043670","https://openalex.org/W4252450863","https://openalex.org/W2022867993","https://openalex.org/W2085105049","https://openalex.org/W3203561460","https://openalex.org/W3009624197","https://openalex.org/W4251138667","https://openalex.org/W2682544458","https://openalex.org/W1969709731"],"abstract_inverted_index":{"Timothy":[0,24,74],"is":[1,101],"a":[2,102],"novel":[3],"large":[4],"scale":[5],"modelling":[6],"framework":[7],"that":[8],"allows":[9,44],"simulating":[10],"of":[11,41,47,60,72,93,109,120,130,132],"biological":[12,111],"processes":[13],"involving":[14],"different":[15],"cellular":[16],"colonies":[17],"growing":[18],"and":[19,161],"interacting":[20],"with":[21],"variable":[22],"environment.":[23],"was":[25],"designed":[26],"for":[27,45],"execution":[28],"on":[29,85,142,147,154],"massively":[30],"parallel":[31,39],"High":[32],"Performance":[33],"Computing":[34],"(HPC)":[35],"systems.":[36],"The":[37],"high":[38,139],"scalability":[40],"the":[42,69,73,91,99,117,121,128,133,155,162],"implementation":[43],"simulations":[46,55,108],"up":[48,61],"to":[49,62,80,98,137],"10":[50],"9":[51],"individual":[52],"cells":[53],"(i.e.,":[54],"at":[56],"tissue":[57,100],"spatial":[58],"scales":[59],"1":[63],"cm":[64],"3":[65],"in":[66,135],"size).":[67],"With":[68],"recent":[70],"advancements":[71],"model,":[75],"it":[76,114],"has":[77],"become":[78],"critical":[79],"ensure":[81],"appropriate":[82],"performance":[83,141],"level":[84],"emerging":[86],"HPC":[87,143],"architectures.":[88],"For":[89],"instance,":[90],"introduction":[92],"blood":[94],"vessels":[95],"supplying":[96],"nutrients":[97],"very":[103],"important":[104],"step":[105],"towards":[106],"realistic":[107],"complex":[110],"processes,":[112],"but":[113],"greatly":[115],"increased":[116],"computational":[118,140],"complexity":[119],"model.":[122],"In":[123],"this":[124],"paper,":[125],"we":[126],"describe":[127],"process":[129],"modernization":[131],"application":[134],"order":[136],"achieve":[138],"hybrid":[144],"systems":[145],"based":[146],"modern":[148],"Intel\u00ae":[149],"MIC":[150],"architecture.":[151],"Experimental":[152],"results":[153],"Intel":[156,163],"Xeon":[157,164],"Phi\u2122":[158],"coprocessor":[159],"x100":[160],"Phi":[165],"processor":[166],"x200":[167],"are":[168],"presented.":[169]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":1}],"updated_date":"2026-08-15T07:11:24.734988","created_date":"2025-10-10T00:00:00"}