{"id":"https://openalex.org/W2603650601","doi":"https://doi.org/10.1155/2017/7024516","title":"PAIRS: Prediction of Activation/Inhibition Regulation Signaling Pathway","display_name":"PAIRS: Prediction of Activation/Inhibition Regulation Signaling Pathway","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2603650601","doi":"https://doi.org/10.1155/2017/7024516","mag":"2603650601","pmid":"https://pubmed.ncbi.nlm.nih.gov/28469669"},"language":"en","primary_location":{"id":"doi:10.1155/2017/7024516","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2017/7024516","pdf_url":"http://downloads.hindawi.com/journals/cin/2017/7024516.pdf","source":{"id":"https://openalex.org/S72372694","display_name":"Computational Intelligence and Neuroscience","issn_l":"1687-5265","issn":["1687-5265","1687-5273"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Intelligence and Neuroscience","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"http://downloads.hindawi.com/journals/cin/2017/7024516.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101900135","display_name":"Tengjiao Wang","orcid":"https://orcid.org/0000-0002-7790-7407"},"institutions":[{"id":"https://openalex.org/I177933477","display_name":"Second Military Medical University","ror":"https://ror.org/04tavpn47","country_code":"CN","type":"education","lineage":["https://openalex.org/I177933477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tengjiao Wang","raw_affiliation_strings":["Second Military Medical University, Shanghai, China"],"raw_orcid":"https://orcid.org/0000-0002-7790-7407","affiliations":[{"raw_affiliation_string":"Second Military Medical University, Shanghai, China","institution_ids":["https://openalex.org/I177933477"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081897060","display_name":"Yanghe Feng","orcid":"https://orcid.org/0000-0003-1608-8695"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yanghe Feng","raw_affiliation_strings":["Science and Technology on Information Systems Engineering Laboratory, National University of Defense Technology, Changsha, Hunan, China"],"raw_orcid":"https://orcid.org/0000-0003-1608-8695","affiliations":[{"raw_affiliation_string":"Science and Technology on Information Systems Engineering Laboratory, National University of Defense Technology, Changsha, Hunan, China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100341185","display_name":"Qi Wang","orcid":"https://orcid.org/0000-0001-6135-6965"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qi Wang","raw_affiliation_strings":["Science and Technology on Information Systems Engineering Laboratory, National University of Defense Technology, Changsha, Hunan, China"],"raw_orcid":"https://orcid.org/0000-0001-6135-6965","affiliations":[{"raw_affiliation_string":"Science and Technology on Information Systems Engineering Laboratory, National University of Defense Technology, Changsha, Hunan, China","institution_ids":["https://openalex.org/I170215575"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5081897060"],"corresponding_institution_ids":["https://openalex.org/I170215575"],"apc_list":{"value":2100,"currency":"USD","value_usd":2100},"apc_paid":{"value":2100,"currency":"USD","value_usd":2100},"fwci":0.5608,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.65680707,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"2017","issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/signal-transduction","display_name":"Signal transduction","score":0.5916591882705688},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5027575492858887},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.432269811630249},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.4246959984302521},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3649083971977234},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.32450562715530396},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3166899085044861},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.3006659746170044},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19820600748062134}],"concepts":[{"id":"https://openalex.org/C62478195","wikidata":"https://www.wikidata.org/wiki/Q828130","display_name":"Signal transduction","level":2,"score":0.5916591882705688},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5027575492858887},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.432269811630249},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.4246959984302521},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3649083971977234},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.32450562715530396},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3166899085044861},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.3006659746170044},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19820600748062134}],"mesh":[{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1155/2017/7024516","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2017/7024516","pdf_url":"http://downloads.hindawi.com/journals/cin/2017/7024516.pdf","source":{"id":"https://openalex.org/S72372694","display_name":"Computational Intelligence and Neuroscience","issn_l":"1687-5265","issn":["1687-5265","1687-5273"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Intelligence and Neuroscience","raw_type":"journal-article"},{"id":"pmid:28469669","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28469669","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational intelligence and neuroscience","raw_type":null},{"id":"pmh:oai:doaj.org/article:a538b8d8f7ff4b4586fa1307d34112bb","is_oa":false,"landing_page_url":"https://doaj.org/article/a538b8d8f7ff4b4586fa1307d34112bb","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computational Intelligence and Neuroscience, Vol 2017 (2017)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5392402","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5392402","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Comput Intell Neurosci","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1155/2017/7024516","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2017/7024516","pdf_url":"http://downloads.hindawi.com/journals/cin/2017/7024516.pdf","source":{"id":"https://openalex.org/S72372694","display_name":"Computational Intelligence and Neuroscience","issn_l":"1687-5265","issn":["1687-5265","1687-5273"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Intelligence and Neuroscience","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.46000000834465027}],"awards":[{"id":"https://openalex.org/G1786433411","display_name":null,"funder_award_id":"31000591","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3606773165","display_name":"\u86cb\u767d\u8d28\u7ec4\u4e2d\u8d28\u8c31\u6570\u636e\u65e0\u6807\u8bb0\u5b9a\u91cf\u4fe1\u606f\u63d0\u53d6\u7b97\u6cd5\u7814\u7a76","funder_award_id":"31000587","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8613153014","display_name":null,"funder_award_id":"31171266","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2603650601.pdf","grobid_xml":"https://content.openalex.org/works/W2603650601.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1493799579","https://openalex.org/W1992352659","https://openalex.org/W1994803330","https://openalex.org/W2070831760","https://openalex.org/W2073307618","https://openalex.org/W2101181377","https://openalex.org/W2103017472","https://openalex.org/W2107432340","https://openalex.org/W2108723074","https://openalex.org/W2132165611","https://openalex.org/W2133298156","https://openalex.org/W2140217512","https://openalex.org/W2147526198","https://openalex.org/W2151900904","https://openalex.org/W2159482845","https://openalex.org/W2168865642","https://openalex.org/W2170958240","https://openalex.org/W2317548112","https://openalex.org/W2333367479","https://openalex.org/W2593359643","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2099982459","https://openalex.org/W2109298101","https://openalex.org/W2007507741","https://openalex.org/W2159860826","https://openalex.org/W3192210502","https://openalex.org/W1981737222","https://openalex.org/W1569394480","https://openalex.org/W4390876228","https://openalex.org/W1998222399","https://openalex.org/W2149807473"],"abstract_inverted_index":{"Uncovering":[0],"the":[1,11,20,29,53,99],"signaling":[2,30,119],"architecture":[3],"in":[4,37,104],"protein-protein":[5],"interaction":[6,87],"(PPI)":[7],"can":[8],"certainly":[9],"benefit":[10],"understanding":[12],"of":[13,39,56,78,98,106],"disease":[14],"mechanisms":[15],"and":[16,41,68,91,95,108],"promise":[17],"to":[18,27,35,51,112],"facilitate":[19],"therapeutic":[21],"interventions.":[22],"Therefore,":[23],"it":[24],"is":[25],"important":[26],"reveal":[28],"relationship":[31,55,103],"from":[32],"one":[33],"protein":[34,69,86,101],"another":[36],"terms":[38,105],"activation":[40,107],"inhibition.":[42,109],"In":[43],"this":[44],"study,":[45],"we":[46,72],"propose":[47],"a":[48,57,74],"new":[49],"measurement":[50],"characterize":[52],"regulation":[54,102,115],"PPI":[58],"pair.":[59],"By":[60],"utilizing":[61],"both":[62,93],"Gene":[63],"Ontology":[64],"(GO)":[65],"functional":[66],"annotation":[67],"domain":[70],"information,":[71],"developed":[73],"tool":[75],"called":[76],"Prediction":[77],"Activation/Inhibition":[79],"Regulation":[80],"Signaling":[81],"Pathway":[82],"(PAIRS)":[83],"that":[84],"takes":[85],"pairs":[88],"as":[89],"input":[90],"gives":[92],"known":[94],"predicted":[96],"result":[97],"human":[100],"It":[110],"helps":[111],"give":[113],"prognostic":[114],"information":[116],"for":[117],"further":[118],"pathway":[120],"reconstruction.":[121]},"counts_by_year":[{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":3}],"updated_date":"2026-06-06T09:05:17.133730","created_date":"2025-10-10T00:00:00"}
