{"id":"https://openalex.org/W2757884255","doi":"https://doi.org/10.1155/2017/3017632","title":"Exploring the Limitations of Peripheral Blood Transcriptional Biomarkers in Predicting Influenza Vaccine Responsiveness","display_name":"Exploring the Limitations of Peripheral Blood Transcriptional Biomarkers in Predicting Influenza Vaccine Responsiveness","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2757884255","doi":"https://doi.org/10.1155/2017/3017632","mag":"2757884255"},"language":"en","primary_location":{"id":"doi:10.1155/2017/3017632","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2017/3017632","pdf_url":"http://downloads.hindawi.com/journals/complexity/2017/3017632.pdf","source":{"id":"https://openalex.org/S207319443","display_name":"Complexity","issn_l":"1076-2787","issn":["1076-2787","1099-0526"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Complexity","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"http://downloads.hindawi.com/journals/complexity/2017/3017632.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052320095","display_name":"Luca Marchetti","orcid":"https://orcid.org/0000-0001-9043-7705"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]},{"id":"https://openalex.org/I2802934434","display_name":"The Microsoft Research - University of Trento Centre for Computational and Systems Biology","ror":"https://ror.org/04kcgyj43","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I1290206253","https://openalex.org/I193223587","https://openalex.org/I2802934434","https://openalex.org/I4210164937"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Luca Marchetti","raw_affiliation_strings":["The Microsoft Research-University of Trento Centre for Computational and Systems Biology (COSBI), 38068 Rovereto, Italy"],"raw_orcid":"https://orcid.org/0000-0001-9043-7705","affiliations":[{"raw_affiliation_string":"The Microsoft Research-University of Trento Centre for Computational and Systems Biology (COSBI), 38068 Rovereto, Italy","institution_ids":["https://openalex.org/I2802934434","https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038087935","display_name":"Emilio Siena","orcid":"https://orcid.org/0000-0003-2197-363X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Emilio Siena","raw_affiliation_strings":["GSK Vaccines, 53100 Siena, Italy"],"raw_orcid":"https://orcid.org/0000-0003-2197-363X","affiliations":[{"raw_affiliation_string":"GSK Vaccines, 53100 Siena, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026481712","display_name":"Mario Lauria","orcid":"https://orcid.org/0000-0001-5983-7292"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]},{"id":"https://openalex.org/I2802934434","display_name":"The Microsoft Research - University of Trento Centre for Computational and Systems Biology","ror":"https://ror.org/04kcgyj43","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I1290206253","https://openalex.org/I193223587","https://openalex.org/I2802934434","https://openalex.org/I4210164937"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Mario Lauria","raw_affiliation_strings":["Department of Mathematics, University of Trento, Povo, 38123 Trento, Italy","The Microsoft Research-University of Trento Centre for Computational and Systems Biology (COSBI), 38068 Rovereto, Italy"],"raw_orcid":"https://orcid.org/0000-0001-5983-7292","affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Trento, Povo, 38123 Trento, Italy","institution_ids":["https://openalex.org/I193223587"]},{"raw_affiliation_string":"The Microsoft Research-University of Trento Centre for Computational and Systems Biology (COSBI), 38068 Rovereto, Italy","institution_ids":["https://openalex.org/I2802934434","https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004673340","display_name":"Denise Maffione","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Denise Maffione","raw_affiliation_strings":["GSK Vaccines, 53100 Siena, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"GSK Vaccines, 53100 Siena, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041841036","display_name":"Nicola Pacchiani","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nicola Pacchiani","raw_affiliation_strings":["GSK Vaccines, 53100 Siena, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"GSK Vaccines, 53100 Siena, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028775661","display_name":"Corrado Priami","orcid":"https://orcid.org/0000-0002-3261-6235"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]},{"id":"https://openalex.org/I2802934434","display_name":"The Microsoft Research - University of Trento Centre for Computational and Systems Biology","ror":"https://ror.org/04kcgyj43","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I1290206253","https://openalex.org/I193223587","https://openalex.org/I2802934434","https://openalex.org/I4210164937"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["IT","US"],"is_corresponding":false,"raw_author_name":"Corrado Priami","raw_affiliation_strings":["Department of Computer Science, Stanford University, Stanford, CA, USA","Department of Mathematics, University of Trento, Povo, 38123 Trento, Italy","The Microsoft Research-University of Trento Centre for Computational and Systems Biology (COSBI), 38068 Rovereto, Italy"],"raw_orcid":"https://orcid.org/0000-0002-3261-6235","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Mathematics, University of Trento, Povo, 38123 Trento, Italy","institution_ids":["https://openalex.org/I193223587"]},{"raw_affiliation_string":"The Microsoft Research-University of Trento Centre for Computational and Systems Biology (COSBI), 38068 Rovereto, Italy","institution_ids":["https://openalex.org/I2802934434","https://openalex.org/I193223587"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079660157","display_name":"Duccio Medini","orcid":"https://orcid.org/0000-0001-6041-2603"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Duccio Medini","raw_affiliation_strings":["GSK Vaccines, 53100 Siena, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"GSK Vaccines, 53100 Siena, Italy","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5052320095"],"corresponding_institution_ids":["https://openalex.org/I193223587","https://openalex.org/I2802934434"],"apc_list":{"value":2300,"currency":"USD","value_usd":2300},"apc_paid":{"value":2300,"currency":"USD","value_usd":2300},"fwci":0.1737,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.57330462,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"2017","issue":null,"first_page":"1","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/immunogenicity","display_name":"Immunogenicity","score":0.6522764563560486},{"id":"https://openalex.org/keywords/vaccination","display_name":"Vaccination","score":0.5971686244010925},{"id":"https://openalex.org/keywords/influenza-vaccine","display_name":"Influenza vaccine","score":0.5589593052864075},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.5229161977767944},{"id":"https://openalex.org/keywords/peripheral-blood","display_name":"Peripheral blood","score":0.5182076096534729},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5109400153160095},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47104644775390625},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.45561322569847107},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.42044320702552795},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.38570475578308105},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3664659559726715},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.32850000262260437},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1767808198928833},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11605897545814514},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.06741425395011902}],"concepts":[{"id":"https://openalex.org/C2780868878","wikidata":"https://www.wikidata.org/wiki/Q1660197","display_name":"Immunogenicity","level":3,"score":0.6522764563560486},{"id":"https://openalex.org/C22070199","wikidata":"https://www.wikidata.org/wiki/Q192995","display_name":"Vaccination","level":2,"score":0.5971686244010925},{"id":"https://openalex.org/C2780689484","wikidata":"https://www.wikidata.org/wiki/Q383260","display_name":"Influenza vaccine","level":3,"score":0.5589593052864075},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.5229161977767944},{"id":"https://openalex.org/C3017910909","wikidata":"https://www.wikidata.org/wiki/Q618363","display_name":"Peripheral blood","level":2,"score":0.5182076096534729},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5109400153160095},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47104644775390625},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.45561322569847107},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.42044320702552795},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.38570475578308105},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3664659559726715},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.32850000262260437},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1767808198928833},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11605897545814514},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.06741425395011902},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1155/2017/3017632","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2017/3017632","pdf_url":"http://downloads.hindawi.com/journals/complexity/2017/3017632.pdf","source":{"id":"https://openalex.org/S207319443","display_name":"Complexity","issn_l":"1076-2787","issn":["1076-2787","1099-0526"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Complexity","raw_type":"journal-article"},{"id":"pmh:oai:RePEc:hin:complx:3017632","is_oa":false,"landing_page_url":"http://downloads.hindawi.com/journals/8503/2017/3017632.xml","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:arpi.unipi.it:11568/887003","is_oa":false,"landing_page_url":"http://hdl.handle.net/11568/887003","pdf_url":null,"source":{"id":"https://openalex.org/S4377196265","display_name":"CINECA IRIS Institutial research information system (University of Pisa)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I108290504","host_organization_name":"University of Pisa","host_organization_lineage":["https://openalex.org/I108290504"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:1b92b1a7bb2745d5b295e388b4f23771","is_oa":true,"landing_page_url":"https://doaj.org/article/1b92b1a7bb2745d5b295e388b4f23771","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Complexity, Vol 2017 (2017)","raw_type":"article"},{"id":"pmh:oai:iris.unitn.it:11572/197115","is_oa":true,"landing_page_url":"https://hdl.handle.net/11572/197115","pdf_url":null,"source":{"id":"https://openalex.org/S4306401913","display_name":"Institutional Research Information System (Universit\u00e0 degli Studi di Trento)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193223587","host_organization_name":"University of Trento","host_organization_lineage":["https://openalex.org/I193223587"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1155/2017/3017632","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2017/3017632","pdf_url":"http://downloads.hindawi.com/journals/complexity/2017/3017632.pdf","source":{"id":"https://openalex.org/S207319443","display_name":"Complexity","issn_l":"1076-2787","issn":["1076-2787","1099-0526"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Complexity","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.7699999809265137}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2757884255.pdf","grobid_xml":"https://content.openalex.org/works/W2757884255.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1570345975","https://openalex.org/W1608110203","https://openalex.org/W1865654416","https://openalex.org/W1968972970","https://openalex.org/W1974193099","https://openalex.org/W1981947694","https://openalex.org/W2015750714","https://openalex.org/W2027188945","https://openalex.org/W2030543393","https://openalex.org/W2031891927","https://openalex.org/W2037665605","https://openalex.org/W2057566115","https://openalex.org/W2059980695","https://openalex.org/W2077872339","https://openalex.org/W2118306668","https://openalex.org/W2119025581","https://openalex.org/W2127991819","https://openalex.org/W2215687226","https://openalex.org/W2517637924","https://openalex.org/W2744138357","https://openalex.org/W4238854650"],"related_works":["https://openalex.org/W1552738310","https://openalex.org/W4250292386","https://openalex.org/W2470318958","https://openalex.org/W2428121789","https://openalex.org/W2030908446","https://openalex.org/W3042894437","https://openalex.org/W2735179801","https://openalex.org/W2320043420","https://openalex.org/W2111831969","https://openalex.org/W2967314070"],"abstract_inverted_index":{"Systems":[0],"biology":[1],"has":[2,19],"been":[3,20],"recently":[4,40],"applied":[5],"to":[6,8,13,22,50,61,65,82,94,118,133,157],"vaccinology":[7],"better":[9],"understand":[10],"immunological":[11],"responses":[12,139],"the":[14,23,63,66,85,104,112,124,128,138,155],"influenza":[15,67,119,159],"vaccine.":[16],"Particular":[17],"attention":[18],"paid":[21],"identification":[24],"of":[25,29,46,106,116,154],"early":[26,96],"signatures":[27],"capable":[28],"predicting":[30],"vaccine":[31,77],"immunogenicity.":[32],"Building":[33],"from":[34,98],"previous":[35],"studies,":[36],"we":[37],"employed":[38],"a":[39,90,107,134,150],"established":[41],"algorithm":[42],"for":[43],"signature-based":[44],"clustering":[45],"expression":[47],"profiles,":[48],"SCUDO,":[49],"provide":[51,149],"new":[52],"insights":[53],"into":[54],"why":[55],"blood-derived":[56],"transcriptome":[57,97],"biomarkers":[58],"often":[59],"fail":[60],"predict":[62],"seroresponse":[64,117,156],"virus":[68,120],"vaccination.":[69],"Specifically,":[70],"preexisting":[71],"immunity":[72],"against":[73,140],"one":[74],"or":[75],"more":[76,151],"antigens,":[78],"which":[79],"was":[80,87,131],"found":[81],"negatively":[83],"affect":[84],"seroresponse,":[86],"identified":[88],"as":[89],"confounding":[91],"factor":[92],"able":[93],"decouple":[95],"later":[99],"antibody":[100],"responses,":[101],"resulting":[102],"in":[103],"degradation":[105],"biomarker":[108],"predictive":[109],"power.":[110],"Finally,":[111],"broadly":[113],"accepted":[114],"definition":[115],"vaccine,":[121],"represented":[122],"by":[123],"maximum":[125],"response":[126],"across":[127],"vaccine-targeted":[129],"strains,":[130],"compared":[132],"composite":[135,147],"measure":[136],"integrating":[137],"all":[141],"strains.":[142],"This":[143],"analysis":[144],"revealed":[145],"that":[146],"measures":[148],"accurate":[152],"assessment":[153],"multicomponent":[158],"vaccines.":[160]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
