{"id":"https://openalex.org/W2736887218","doi":"https://doi.org/10.1155/2017/1278932","title":"Empirical Comparison of Visualization Tools for Larger-Scale Network Analysis","display_name":"Empirical Comparison of Visualization Tools for Larger-Scale Network Analysis","publication_year":2017,"publication_date":"2017-07-18","ids":{"openalex":"https://openalex.org/W2736887218","doi":"https://doi.org/10.1155/2017/1278932","mag":"2736887218","pmid":"https://pubmed.ncbi.nlm.nih.gov/28804499"},"language":"en","primary_location":{"id":"doi:10.1155/2017/1278932","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2017/1278932","pdf_url":"https://downloads.hindawi.com/archive/2017/1278932.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://downloads.hindawi.com/archive/2017/1278932.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088991393","display_name":"Georgios A. Pavlopoulos","orcid":"https://orcid.org/0000-0002-4577-8276"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Georgios A. Pavlopoulos","raw_affiliation_strings":["Department of Energy, Joint Genome Institute, Lawrence Berkeley Labs, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA"],"affiliations":[{"raw_affiliation_string":"Department of Energy, Joint Genome Institute, Lawrence Berkeley Labs, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081848590","display_name":"David P\u00e1ez-Espino","orcid":"https://orcid.org/0000-0002-2939-5398"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Paez-Espino","raw_affiliation_strings":["Department of Energy, Joint Genome Institute, Lawrence Berkeley Labs, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA"],"affiliations":[{"raw_affiliation_string":"Department of Energy, Joint Genome Institute, Lawrence Berkeley Labs, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023696415","display_name":"Nikos C. Kyrpides","orcid":"https://orcid.org/0000-0002-6131-0462"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nikos C. Kyrpides","raw_affiliation_strings":["Department of Energy, Joint Genome Institute, Lawrence Berkeley Labs, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA"],"affiliations":[{"raw_affiliation_string":"Department of Energy, Joint Genome Institute, Lawrence Berkeley Labs, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054328679","display_name":"Ioannis Iliopoulos","orcid":"https://orcid.org/0000-0002-8965-9535"},"institutions":[{"id":"https://openalex.org/I142617266","display_name":"University of Crete","ror":"https://ror.org/00dr28g20","country_code":"GR","type":"education","lineage":["https://openalex.org/I142617266"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Ioannis Iliopoulos","raw_affiliation_strings":["Division of Basic Sciences, University of Crete Medical School, Andrea Kalokerinou Street, Heraklion, Greece"],"affiliations":[{"raw_affiliation_string":"Division of Basic Sciences, University of Crete Medical School, Andrea Kalokerinou Street, Heraklion, Greece","institution_ids":["https://openalex.org/I142617266"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5054328679","https://openalex.org/A5088991393"],"corresponding_institution_ids":["https://openalex.org/I142617266","https://openalex.org/I148283060","https://openalex.org/I196679689"],"apc_list":null,"apc_paid":null,"fwci":5.5475,"has_fulltext":true,"cited_by_count":66,"citation_normalized_percentile":{"value":0.96502154,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"2017","issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.944599986076355,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7072329521179199},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6640345454216003},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5619630813598633},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4662538766860962},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40815696120262146},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.13388019800186157},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.06961038708686829}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7072329521179199},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6640345454216003},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5619630813598633},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4662538766860962},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40815696120262146},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.13388019800186157},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.06961038708686829}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1155/2017/1278932","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2017/1278932","pdf_url":"https://downloads.hindawi.com/archive/2017/1278932.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28804499","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28804499","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in bioinformatics","raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt6kd1k6tv","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/6kd1k6tv","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Advances in bioinformatics, vol 2017","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4396150","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5540468","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:osti.gov:1371813","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1371813","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:1629065","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1629065","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1155/2017/1278932","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2017/1278932","pdf_url":"https://downloads.hindawi.com/archive/2017/1278932.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1677143136","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320317220","funder_display_name":"National Energy Research Scientific Computing Center"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G425189044","display_name":null,"funder_award_id":"DE-AC02-05CH","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4565140552","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4841871747","display_name":null,"funder_award_id":"DE_AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5076365615","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320317220","funder_display_name":"National Energy Research Scientific Computing Center"},{"id":"https://openalex.org/G5315912995","display_name":null,"funder_award_id":"11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5602503670","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320316170","funder_display_name":"Joint Genome Institute"},{"id":"https://openalex.org/G5802748842","display_name":null,"funder_award_id":"DE-AC02-05CH112","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G6330738325","display_name":null,"funder_award_id":"DE_AC02_05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6348972864","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6429026066","display_name":null,"funder_award_id":"DE-AC02-05CH112","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7205239661","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320316170","funder_display_name":"Joint Genome Institute"},{"id":"https://openalex.org/G7340683655","display_name":null,"funder_award_id":"E-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7406122311","display_name":null,"funder_award_id":"AC02-05CH1123","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7664691372","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G7825954517","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7861570460","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320317220","funder_display_name":"National Energy Research Scientific Computing Center"},{"id":"https://openalex.org/G8414908677","display_name":null,"funder_award_id":"DE-AC0","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G897164627","display_name":null,"funder_award_id":"DE-AC02_05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320316170","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337"},{"id":"https://openalex.org/F4320317220","display_name":"National Energy Research Scientific Computing Center","ror":"https://ror.org/05v3mvq14"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2736887218.pdf","grobid_xml":"https://content.openalex.org/works/W2736887218.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W49604712","https://openalex.org/W1887724846","https://openalex.org/W1916339519","https://openalex.org/W1971471239","https://openalex.org/W1981029985","https://openalex.org/W1986662234","https://openalex.org/W2001914359","https://openalex.org/W2006933206","https://openalex.org/W2010099799","https://openalex.org/W2023098599","https://openalex.org/W2027507818","https://openalex.org/W2028695285","https://openalex.org/W2058720919","https://openalex.org/W2061239067","https://openalex.org/W2070040136","https://openalex.org/W2075220720","https://openalex.org/W2082199132","https://openalex.org/W2088412871","https://openalex.org/W2091789479","https://openalex.org/W2095293504","https://openalex.org/W2103017472","https://openalex.org/W2106474670","https://openalex.org/W2107249189","https://openalex.org/W2110025254","https://openalex.org/W2115043726","https://openalex.org/W2121905803","https://openalex.org/W2124166542","https://openalex.org/W2128965269","https://openalex.org/W2130863229","https://openalex.org/W2131681506","https://openalex.org/W2136850043","https://openalex.org/W2145889895","https://openalex.org/W2149194035","https://openalex.org/W2150908245","https://openalex.org/W2150926065","https://openalex.org/W2153490111","https://openalex.org/W2158804744","https://openalex.org/W2159675211","https://openalex.org/W2165232124","https://openalex.org/W2167482691","https://openalex.org/W2469279958","https://openalex.org/W2530896378","https://openalex.org/W2615147949","https://openalex.org/W3099768174","https://openalex.org/W4238387639"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2068608913","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890"],"abstract_inverted_index":{"Gene":[0],"expression,":[1],"signal":[2],"transduction,":[3],"protein/chemical":[4],"interactions,":[5],"biomedical":[6],"literature":[7],"cooccurrences,":[8],"and":[9,25,37,51,88,95,98,105],"other":[10],"concepts":[11],"are":[12],"often":[13],"captured":[14],"in":[15],"biological":[16],"network":[17,67,85],"representations":[18],"where":[19],"nodes":[20],"represent":[21],"a":[22,63,72],"certain":[23],"bioentity":[24],"edges":[26],"the":[27],"connections":[28],"between":[29],"them.":[30],"While":[31],"many":[32],"tools":[33,69,81],"to":[34],"manipulate,":[35],"visualize,":[36],"interactively":[38],"explore":[39],"such":[40],"networks":[41],"already":[42],"exist,":[43],"only":[44],"few":[45],"of":[46,65,75],"them":[47],"can":[48],"scale":[49],"up":[50],"follow":[52],"today's":[53],"indisputable":[54],"information":[55],"growth.":[56],"In":[57],"this":[58],"review,":[59],"we":[60,77],"shortly":[61],"list":[62],"catalog":[64],"available":[66],"visualization":[68],"and,":[70],"from":[71],"user-experience":[73],"point":[74],"view,":[76],"identify":[78],"four":[79],"candidate":[80],"suitable":[82],"for":[83],"larger-scale":[84],"analysis,":[86],"visualization,":[87],"exploration.":[89],"We":[90],"comment":[91],"on":[92],"their":[93,96,101],"strengths":[94],"weaknesses":[97],"empirically":[99],"discuss":[100],"scalability,":[102],"user":[103],"friendliness,":[104],"postvisualization":[106],"capabilities.":[107]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":18},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
