{"id":"https://openalex.org/W2297127816","doi":"https://doi.org/10.1155/2016/8792814","title":"Structural Dynamics of Human Argonaute2 and Its Interaction with siRNAs Designed to Target Mutant tdp43","display_name":"Structural Dynamics of Human Argonaute2 and Its Interaction with siRNAs Designed to Target Mutant tdp43","publication_year":2016,"publication_date":"2016-03-06","ids":{"openalex":"https://openalex.org/W2297127816","doi":"https://doi.org/10.1155/2016/8792814","mag":"2297127816","pmid":"https://pubmed.ncbi.nlm.nih.gov/27110240"},"language":"en","primary_location":{"id":"doi:10.1155/2016/8792814","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2016/8792814","pdf_url":"https://downloads.hindawi.com/archive/2016/8792814.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://downloads.hindawi.com/archive/2016/8792814.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050197202","display_name":"Vishwambhar Vishnu Bhandare","orcid":"https://orcid.org/0000-0001-8289-1959"},"institutions":[{"id":"https://openalex.org/I175691731","display_name":"Pondicherry University","ror":"https://ror.org/01a3mef16","country_code":"IN","type":"education","lineage":["https://openalex.org/I175691731"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Vishwambhar Bhandare","raw_affiliation_strings":["Centre for Bioinformatics, Pondicherry University, Pondicherry 605014, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Bioinformatics, Pondicherry University, Pondicherry 605014, India","institution_ids":["https://openalex.org/I175691731"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044076845","display_name":"R. Amutha","orcid":"https://orcid.org/0000-0002-4677-2263"},"institutions":[{"id":"https://openalex.org/I175691731","display_name":"Pondicherry University","ror":"https://ror.org/01a3mef16","country_code":"IN","type":"education","lineage":["https://openalex.org/I175691731"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Amutha Ramaswamy","raw_affiliation_strings":["Centre for Bioinformatics, Pondicherry University, Pondicherry 605014, India"],"raw_orcid":"https://orcid.org/0000-0002-4677-2263","affiliations":[{"raw_affiliation_string":"Centre for Bioinformatics, Pondicherry University, Pondicherry 605014, India","institution_ids":["https://openalex.org/I175691731"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5044076845"],"corresponding_institution_ids":["https://openalex.org/I175691731"],"apc_list":null,"apc_paid":null,"fwci":1.0445,"has_fulltext":true,"cited_by_count":36,"citation_normalized_percentile":{"value":0.77929981,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"2016","issue":null,"first_page":"1","last_page":"13"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10725","display_name":"RNA Interference and Gene Delivery","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10725","display_name":"RNA Interference and Gene Delivery","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/small-interfering-rna","display_name":"Small interfering RNA","score":0.843621015548706},{"id":"https://openalex.org/keywords/gene-silencing","display_name":"Gene silencing","score":0.7321887016296387},{"id":"https://openalex.org/keywords/rna-interference","display_name":"RNA interference","score":0.6475139856338501},{"id":"https://openalex.org/keywords/trans-acting-sirna","display_name":"Trans-acting siRNA","score":0.637222409248352},{"id":"https://openalex.org/keywords/mutant","display_name":"Mutant","score":0.624572217464447},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.557834267616272},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.4916461110115051},{"id":"https://openalex.org/keywords/argonaute","display_name":"Argonaute","score":0.44742658734321594},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3863464593887329},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3363730311393738},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3326467275619507},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2623410224914551},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.14552545547485352}],"concepts":[{"id":"https://openalex.org/C22615655","wikidata":"https://www.wikidata.org/wiki/Q203221","display_name":"Small interfering RNA","level":4,"score":0.843621015548706},{"id":"https://openalex.org/C119056186","wikidata":"https://www.wikidata.org/wiki/Q1431332","display_name":"Gene silencing","level":3,"score":0.7321887016296387},{"id":"https://openalex.org/C166703698","wikidata":"https://www.wikidata.org/wiki/Q201993","display_name":"RNA interference","level":4,"score":0.6475139856338501},{"id":"https://openalex.org/C60723119","wikidata":"https://www.wikidata.org/wiki/Q7833577","display_name":"Trans-acting siRNA","level":5,"score":0.637222409248352},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.624572217464447},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.557834267616272},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.4916461110115051},{"id":"https://openalex.org/C201853390","wikidata":"https://www.wikidata.org/wiki/Q413236","display_name":"Argonaute","level":5,"score":0.44742658734321594},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3863464593887329},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3363730311393738},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3326467275619507},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2623410224914551},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.14552545547485352}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1155/2016/8792814","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2016/8792814","pdf_url":"https://downloads.hindawi.com/archive/2016/8792814.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27110240","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27110240","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:f9ae416e5d314c46b1902cae16c1e50b","is_oa":false,"landing_page_url":"https://doaj.org/article/f9ae416e5d314c46b1902cae16c1e50b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Advances in Bioinformatics, Vol 2016 (2016)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:3809271","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4824133","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1155/2016/8792814","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2016/8792814","pdf_url":"https://downloads.hindawi.com/archive/2016/8792814.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.5299999713897705,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320767","display_name":"University Grants Commission","ror":"https://ror.org/04p800546"},{"id":"https://openalex.org/F4320334771","display_name":"Science and Engineering Research Board","ror":"https://ror.org/03ffdsr55"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2297127816.pdf","grobid_xml":"https://content.openalex.org/works/W2297127816.grobid-xml"},"referenced_works_count":71,"referenced_works":["https://openalex.org/W206978487","https://openalex.org/W1611419331","https://openalex.org/W1647075334","https://openalex.org/W1964474718","https://openalex.org/W1969937956","https://openalex.org/W1974448552","https://openalex.org/W1981021420","https://openalex.org/W1986640851","https://openalex.org/W1989454102","https://openalex.org/W1991208268","https://openalex.org/W1996741872","https://openalex.org/W2004327356","https://openalex.org/W2008547756","https://openalex.org/W2008708467","https://openalex.org/W2022946154","https://openalex.org/W2034120175","https://openalex.org/W2034394760","https://openalex.org/W2036757369","https://openalex.org/W2044172327","https://openalex.org/W2045265967","https://openalex.org/W2046109186","https://openalex.org/W2054166086","https://openalex.org/W2059240931","https://openalex.org/W2069052060","https://openalex.org/W2070781141","https://openalex.org/W2072981065","https://openalex.org/W2073545156","https://openalex.org/W2074106269","https://openalex.org/W2074718022","https://openalex.org/W2080423827","https://openalex.org/W2081693079","https://openalex.org/W2083717115","https://openalex.org/W2084938583","https://openalex.org/W2088329958","https://openalex.org/W2089492417","https://openalex.org/W2090128863","https://openalex.org/W2096386031","https://openalex.org/W2101086441","https://openalex.org/W2101543035","https://openalex.org/W2103325328","https://openalex.org/W2105854534","https://openalex.org/W2109860593","https://openalex.org/W2118233996","https://openalex.org/W2126810432","https://openalex.org/W2127861463","https://openalex.org/W2128572087","https://openalex.org/W2128701198","https://openalex.org/W2131174366","https://openalex.org/W2132629607","https://openalex.org/W2132691262","https://openalex.org/W2132888671","https://openalex.org/W2133291953","https://openalex.org/W2135607950","https://openalex.org/W2136361016","https://openalex.org/W2141877184","https://openalex.org/W2142068542","https://openalex.org/W2146138017","https://openalex.org/W2158605421","https://openalex.org/W2161239543","https://openalex.org/W2161605421","https://openalex.org/W2161870238","https://openalex.org/W2166404610","https://openalex.org/W2166802510","https://openalex.org/W2167279962","https://openalex.org/W2170781554","https://openalex.org/W2171268876","https://openalex.org/W2270074366","https://openalex.org/W4205676105","https://openalex.org/W4211063783","https://openalex.org/W4246016408","https://openalex.org/W4254098370"],"related_works":["https://openalex.org/W2012211631","https://openalex.org/W3140432620","https://openalex.org/W1978057048","https://openalex.org/W2945223045","https://openalex.org/W2167475271","https://openalex.org/W2047147668","https://openalex.org/W1985127633","https://openalex.org/W1649999227","https://openalex.org/W2165430941","https://openalex.org/W2146767638"],"abstract_inverted_index":{"The":[0,29,57,100],"human":[1,39,58],"Argonaute2":[2],"protein":[3,60,147,181],"(Ago2)":[4],"is":[5,19,83,93,156],"a":[6,48,96,108,159,172],"key":[7],"player":[8],"in":[9,23],"RNA":[10,15],"interference":[11],"pathway":[12],"and":[13,35,41,67,104,121,139,165],"small":[14],"recognition":[16,141],"by":[17,144],"Ago2":[18,40,46,59,103,146,164],"the":[20,33,42,54,70,77,87,137,145,151,154,178,183],"crucial":[21],"step":[22],"siRNA":[24,90,143,161,174],"mediated":[25],"gene":[26],"silencing":[27],"mechanism.":[28],"present":[30],"study":[31],"highlights":[32],"structural":[34],"functional":[36],"dynamics":[37],"of":[38,45,50,72,76,89,110,123,142,185],"interaction":[43,101],"mechanism":[44],"with":[47],"set":[49,109],"seven":[51],"siRNAs":[52,111],"for":[53,85,182],"first":[55],"time.":[56],"adopts":[61],"two":[62],"conformations":[63],"such":[64],"as":[65,80,95,158,171],"\"open\"":[66],"\"close\"":[68],"during":[69,148],"simulation":[71],"25":[73],"ns.":[74],"One":[75],"domains":[78],"named":[79],"PAZ,":[81],"which":[82],"responsible":[84],"anchoring":[86],"3'-end":[88],"guide":[91],"strand,":[92],"observed":[94],"highly":[97],"flexible":[98],"region.":[99],"between":[102],"siRNA,":[105],"analyzed":[106],"using":[107],"(targeting":[112],"at":[113],"positions":[114],"128,":[115],"251,":[116],"341,":[117],"383,":[118],"537,":[119],"1113,":[120],"1115":[122],"mRNA)":[124],"designed":[125],"to":[126,162,176],"target":[127,177],"tdp43":[128,180],"mutants":[129],"causing":[130],"Amyotrophic":[131],"Lateral":[132],"Sclerosis":[133],"(ALS)":[134],"disease,":[135],"revealed":[136],"stable":[138],"strong":[140],"dynamics.":[149],"Among":[150],"studied":[152],"siRNAs,":[153],"siRNA341":[155],"identified":[157],"potent":[160],"recognize":[163],"hence":[166],"could":[167],"be":[168],"used":[169],"further":[170],"possible":[173],"candidate":[175],"mutant":[179],"treatment":[184],"ALS":[186],"patients.":[187]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-05-21T09:19:25.381259","created_date":"2025-10-10T00:00:00"}
