{"id":"https://openalex.org/W2506946498","doi":"https://doi.org/10.1155/2016/3528406","title":"An Optimal Seed Based Compression Algorithm for DNA Sequences","display_name":"An Optimal Seed Based Compression Algorithm for DNA Sequences","publication_year":2016,"publication_date":"2016-07-31","ids":{"openalex":"https://openalex.org/W2506946498","doi":"https://doi.org/10.1155/2016/3528406","mag":"2506946498","pmid":"https://pubmed.ncbi.nlm.nih.gov/27555868"},"language":"en","primary_location":{"id":"doi:10.1155/2016/3528406","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2016/3528406","pdf_url":"http://downloads.hindawi.com/journals/abi/2016/3528406.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"http://downloads.hindawi.com/journals/abi/2016/3528406.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054192250","display_name":"Pamela Vinitha Eric","orcid":"https://orcid.org/0000-0002-4840-6179"},"institutions":[{"id":"https://openalex.org/I286135121","display_name":"Rajiv Gandhi University of Health Sciences","ror":"https://ror.org/0157vkf66","country_code":"IN","type":"education","lineage":["https://openalex.org/I286135121"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Pamela Vinitha Eric","raw_affiliation_strings":["Department of Information Science and Engineering, Rajiv Gandhi Institute of Technology, Bangalore 560032, India"],"raw_orcid":"https://orcid.org/0000-0002-4840-6179","affiliations":[{"raw_affiliation_string":"Department of Information Science and Engineering, Rajiv Gandhi Institute of Technology, Bangalore 560032, India","institution_ids":["https://openalex.org/I286135121"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Gopakumar Gopalakrishnan","orcid":null},"institutions":[{"id":"https://openalex.org/I114845381","display_name":"National Institute of Technology Calicut","ror":"https://ror.org/03yyd7552","country_code":"IN","type":"education","lineage":["https://openalex.org/I114845381"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Gopakumar Gopalakrishnan","raw_affiliation_strings":["Department of Computer Science and Engineering, National Institute of Technology Calicut, Kerala 673601, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, National Institute of Technology Calicut, Kerala 673601, India","institution_ids":["https://openalex.org/I114845381"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069398157","display_name":"M Karunakaran","orcid":null},"institutions":[{"id":"https://openalex.org/I114845381","display_name":"National Institute of Technology Calicut","ror":"https://ror.org/03yyd7552","country_code":"IN","type":"education","lineage":["https://openalex.org/I114845381"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Muralikrishnan Karunakaran","raw_affiliation_strings":["Department of Computer Science and Engineering, National Institute of Technology Calicut, Kerala 673601, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, National Institute of Technology Calicut, Kerala 673601, India","institution_ids":["https://openalex.org/I114845381"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5054192250"],"corresponding_institution_ids":["https://openalex.org/I286135121"],"apc_list":null,"apc_paid":null,"fwci":2.209,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.90839626,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"2016","issue":null,"first_page":"1","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9850999712944031,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9707000255584717,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lossless-compression","display_name":"Lossless compression","score":0.9194763898849487},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7691618204116821},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.6491838693618774},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.6401553153991699},{"id":"https://openalex.org/keywords/compression","display_name":"Compression (physics)","score":0.6360425353050232},{"id":"https://openalex.org/keywords/compression-ratio","display_name":"Compression ratio","score":0.5913925766944885},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5792307257652283},{"id":"https://openalex.org/keywords/scheme","display_name":"Scheme (mathematics)","score":0.48839014768600464},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.45015543699264526},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.42851200699806213},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1164044439792633},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10549256205558777},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09004947543144226}],"concepts":[{"id":"https://openalex.org/C81081738","wikidata":"https://www.wikidata.org/wiki/Q55542","display_name":"Lossless compression","level":3,"score":0.9194763898849487},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7691618204116821},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6491838693618774},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.6401553153991699},{"id":"https://openalex.org/C180016635","wikidata":"https://www.wikidata.org/wiki/Q2712821","display_name":"Compression (physics)","level":2,"score":0.6360425353050232},{"id":"https://openalex.org/C25797200","wikidata":"https://www.wikidata.org/wiki/Q828137","display_name":"Compression ratio","level":3,"score":0.5913925766944885},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5792307257652283},{"id":"https://openalex.org/C77618280","wikidata":"https://www.wikidata.org/wiki/Q1155772","display_name":"Scheme (mathematics)","level":2,"score":0.48839014768600464},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.45015543699264526},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.42851200699806213},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1164044439792633},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10549256205558777},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09004947543144226},{"id":"https://openalex.org/C511840579","wikidata":"https://www.wikidata.org/wiki/Q12757","display_name":"Internal combustion engine","level":2,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C171146098","wikidata":"https://www.wikidata.org/wiki/Q124192","display_name":"Automotive engineering","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1155/2016/3528406","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2016/3528406","pdf_url":"http://downloads.hindawi.com/journals/abi/2016/3528406.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27555868","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27555868","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:4ba19fd36c31483f88e53118541aa131","is_oa":false,"landing_page_url":"https://doaj.org/article/4ba19fd36c31483f88e53118541aa131","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Advances in Bioinformatics, Vol 2016 (2016)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:3953645","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4983397","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1155/2016/3528406","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2016/3528406","pdf_url":"http://downloads.hindawi.com/journals/abi/2016/3528406.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2506946498.pdf","grobid_xml":"https://content.openalex.org/works/W2506946498.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1496422306","https://openalex.org/W1528514765","https://openalex.org/W1600160041","https://openalex.org/W1886627987","https://openalex.org/W1970231722","https://openalex.org/W1999228575","https://openalex.org/W2004941704","https://openalex.org/W2055043387","https://openalex.org/W2090667881","https://openalex.org/W2107745473","https://openalex.org/W2108278098","https://openalex.org/W2108619226","https://openalex.org/W2114953535","https://openalex.org/W2117953160","https://openalex.org/W2122962290","https://openalex.org/W2124871568","https://openalex.org/W2127912200","https://openalex.org/W2128591967","https://openalex.org/W2134814259","https://openalex.org/W2146028503","https://openalex.org/W2147492358","https://openalex.org/W2155729921","https://openalex.org/W2163294786","https://openalex.org/W2166064672","https://openalex.org/W2166830041","https://openalex.org/W2168909179","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W2948148442","https://openalex.org/W2461250372","https://openalex.org/W2394342941","https://openalex.org/W2169853506","https://openalex.org/W2547124190","https://openalex.org/W2350586049","https://openalex.org/W2385628723","https://openalex.org/W2032414556","https://openalex.org/W2169871401","https://openalex.org/W2057878850"],"abstract_inverted_index":{"This":[0],"paper":[1],"proposes":[2],"a":[3,11,16,67],"seed":[4],"based":[5],"lossless":[6,79],"compression":[7,25,68,82],"algorithm":[8],"to":[9,22],"compress":[10],"DNA":[12,38,80],"sequence":[13,81],"which":[14,45],"uses":[15],"substitution":[17],"method":[18,29,65],"that":[19,34,58,70],"is":[20,71],"similar":[21],"the":[23,31,52,64,77],"LempelZiv":[24],"scheme.":[26],"The":[27],"proposed":[28],"exploits":[30],"repetition":[32],"structures":[33],"are":[35,62],"inherent":[36],"in":[37],"sequences":[39],"by":[40],"creating":[41],"an":[42],"offline":[43],"dictionary":[44],"contains":[46],"all":[47],"such":[48],"repeats":[49],"along":[50],"with":[51],"details":[53],"of":[54],"mismatches.":[55],"By":[56],"ensuring":[57],"only":[59],"promising":[60],"mismatches":[61],"allowed,":[63],"achieves":[66],"ratio":[69],"at":[72],"par":[73],"or":[74],"better":[75],"than":[76],"existing":[78],"algorithms.":[83]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
