{"id":"https://openalex.org/W2085245074","doi":"https://doi.org/10.1155/2015/597170","title":"Semantic Annotation for Biological Information Retrieval System","display_name":"Semantic Annotation for Biological Information Retrieval System","publication_year":2015,"publication_date":"2015-02-09","ids":{"openalex":"https://openalex.org/W2085245074","doi":"https://doi.org/10.1155/2015/597170","mag":"2085245074","pmid":"https://pubmed.ncbi.nlm.nih.gov/25737720"},"language":"en","primary_location":{"id":"doi:10.1155/2015/597170","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2015/597170","pdf_url":"http://downloads.hindawi.com/archive/2015/597170.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"http://downloads.hindawi.com/archive/2015/597170.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054694158","display_name":"Mohamed Marouf Z. Oshaiba","orcid":null},"institutions":[{"id":"https://openalex.org/I145487455","display_name":"Cairo University","ror":"https://ror.org/03q21mh05","country_code":"EG","type":"education","lineage":["https://openalex.org/I145487455"]}],"countries":["EG"],"is_corresponding":true,"raw_author_name":"Mohamed Marouf Z. Oshaiba","raw_affiliation_strings":["Computer Science Department, Faculty of Computers and Information, Cairo University, Dr. Ahmed Zewail Street, Orman, Giza 12613, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, Faculty of Computers and Information, Cairo University, Dr. Ahmed Zewail Street, Orman, Giza 12613, Egypt","institution_ids":["https://openalex.org/I145487455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090371887","display_name":"Enas M. F. El Houby","orcid":"https://orcid.org/0000-0002-6005-8787"},"institutions":[{"id":"https://openalex.org/I4210131959","display_name":"National Research Centre","ror":"https://ror.org/02n85j827","country_code":"EG","type":"facility","lineage":["https://openalex.org/I4210131959"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Enas M. F. El Houby","raw_affiliation_strings":["Engineering Division, Systems & Information Department, National Research Centre, El Buhouth Street, Dokki, Cairo 12311, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Engineering Division, Systems & Information Department, National Research Centre, El Buhouth Street, Dokki, Cairo 12311, Egypt","institution_ids":["https://openalex.org/I4210131959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101422198","display_name":"Akram Salah","orcid":"https://orcid.org/0000-0001-7472-0092"},"institutions":[{"id":"https://openalex.org/I145487455","display_name":"Cairo University","ror":"https://ror.org/03q21mh05","country_code":"EG","type":"education","lineage":["https://openalex.org/I145487455"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Akram Salah","raw_affiliation_strings":["Computer Science Department, Faculty of Computers and Information, Cairo University, Dr. Ahmed Zewail Street, Orman, Giza 12613, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, Faculty of Computers and Information, Cairo University, Dr. Ahmed Zewail Street, Orman, Giza 12613, Egypt","institution_ids":["https://openalex.org/I145487455"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5054694158"],"corresponding_institution_ids":["https://openalex.org/I145487455"],"apc_list":null,"apc_paid":null,"fwci":0.4517,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.65933459,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"2015","issue":null,"first_page":"1","last_page":"11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9531000256538391,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.74472975730896},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6337505578994751},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6114410758018494},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.33584633469581604},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22032034397125244}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.74472975730896},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6337505578994751},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6114410758018494},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.33584633469581604},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22032034397125244}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1155/2015/597170","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2015/597170","pdf_url":"http://downloads.hindawi.com/archive/2015/597170.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25737720","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25737720","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3313826","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4337267","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1155/2015/597170","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2015/597170","pdf_url":"http://downloads.hindawi.com/archive/2015/597170.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.46000000834465027}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2085245074.pdf","grobid_xml":"https://content.openalex.org/works/W2085245074.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W18286363","https://openalex.org/W79702431","https://openalex.org/W89601467","https://openalex.org/W1482552937","https://openalex.org/W1597751798","https://openalex.org/W2124823972","https://openalex.org/W2131520733","https://openalex.org/W2132232128","https://openalex.org/W2134756663","https://openalex.org/W2164394614","https://openalex.org/W2245633674","https://openalex.org/W2294184395","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516"],"abstract_inverted_index":{"Online":[0],"literatures":[1],"are":[2,25],"increasing":[3],"in":[4,114,124],"a":[5,20,56,112,159],"tremendous":[6],"rate.":[7],"Biological":[8,17],"domain":[9],"is":[10,36,110,133],"one":[11],"of":[12,33,44,104,121],"the":[13,95,105,128,145,150,164,169,183],"fast":[14],"growing":[15],"domains.":[16],"researchers":[18,60],"face":[19],"problem":[21],"finding":[22],"what":[23],"they":[24],"searching":[26,99,129],"for":[27],"effectively":[28],"and":[29,90,153],"efficiently.":[30],"The":[31,75,156,172],"aim":[32],"this":[34,115],"research":[35,54,116],"to":[37,61,66,97,117,126,135,140,162,178],"find":[38,179],"documents":[39,64,125,166,180],"that":[40,58,181],"contain":[41],"any":[42,102],"combination":[43,103],"biological":[45,88,122],"process":[46],"and/or":[47,50],"molecular":[48,91],"function":[49],"cellular":[51],"component.":[52],"This":[53],"proposes":[55],"framework":[57],"helps":[59],"retrieve":[62],"meaningful":[63,147],"related":[65,138],"their":[67],"asserted":[68,141,184],"terms":[69,100,123,139,185],"based":[70,167],"on":[71,168],"gene":[72],"ontology":[73],"(GO).":[74],"system":[76,157,174],"utilizes":[77],"GO":[78],"by":[79],"semantically":[80,137],"decomposing":[81],"it":[82],"into":[83],"three":[84,106],"subontologies":[85],"(cellular":[86],"component,":[87],"process,":[89],"function).":[92],"Researcher":[93],"has":[94],"flexibility":[96],"choose":[98],"from":[101],"subontologies.":[107],"Document":[108],"annotation":[109],"taking":[111],"place":[113],"create":[118],"an":[119],"index":[120],"speed":[127],"process.":[130],"Query":[131],"expansion":[132],"used":[134],"infer":[136],"terms.":[142],"It":[143],"increases":[144],"search":[146],"results":[148],"using":[149],"term":[151,154],"synonyms":[152],"relationships.":[155],"uses":[158],"ranking":[160,170],"method":[161],"order":[163],"retrieved":[165],"weights.":[171],"proposed":[173],"achieves":[175],"researchers'":[176],"needs":[177],"fit":[182],"semantically.":[186]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
