{"id":"https://openalex.org/W2019165514","doi":"https://doi.org/10.1155/2013/793130","title":"Efficient Serial and Parallel Algorithms for Selection of Unique Oligos in EST Databases","display_name":"Efficient Serial and Parallel Algorithms for Selection of Unique Oligos in EST Databases","publication_year":2013,"publication_date":"2013-04-08","ids":{"openalex":"https://openalex.org/W2019165514","doi":"https://doi.org/10.1155/2013/793130","mag":"2019165514","pmid":"https://pubmed.ncbi.nlm.nih.gov/23653640"},"language":"en","primary_location":{"id":"doi:10.1155/2013/793130","is_oa":true,"landing_page_url":"http://doi.org/10.1155/2013/793130","pdf_url":"https://downloads.hindawi.com/archive/2013/793130.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://downloads.hindawi.com/archive/2013/793130.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058840935","display_name":"Manrique Mata-Montero","orcid":null},"institutions":[{"id":"https://openalex.org/I130438778","display_name":"Memorial University of Newfoundland","ror":"https://ror.org/04haebc03","country_code":"CA","type":"education","lineage":["https://openalex.org/I130438778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Manrique Mata-Montero","raw_affiliation_strings":["Department of Computer Science, Memorial University, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Memorial University, Canada","institution_ids":["https://openalex.org/I130438778"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060832265","display_name":"Nabil Shalaby","orcid":"https://orcid.org/0000-0002-7967-5937"},"institutions":[{"id":"https://openalex.org/I130438778","display_name":"Memorial University of Newfoundland","ror":"https://ror.org/04haebc03","country_code":"CA","type":"education","lineage":["https://openalex.org/I130438778"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Nabil Shalaby","raw_affiliation_strings":["Department of Mathematics and Statistics, Memorial University, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, Memorial University, Canada","institution_ids":["https://openalex.org/I130438778"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035385606","display_name":"Bradley Sheppard","orcid":"https://orcid.org/0000-0002-8672-862X"},"institutions":[{"id":"https://openalex.org/I130438778","display_name":"Memorial University of Newfoundland","ror":"https://ror.org/04haebc03","country_code":"CA","type":"education","lineage":["https://openalex.org/I130438778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Bradley Sheppard","raw_affiliation_strings":["Department of Computer Science, Memorial University, Canada","Department of Mathematics and Statistics, Memorial University, Canada"],"raw_orcid":"https://orcid.org/0000-0002-8672-862X","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Memorial University, Canada","institution_ids":["https://openalex.org/I130438778"]},{"raw_affiliation_string":"Department of Mathematics and Statistics, Memorial University, Canada","institution_ids":["https://openalex.org/I130438778"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5060832265"],"corresponding_institution_ids":["https://openalex.org/I130438778"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08063022,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2013","issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8088431358337402},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5857800245285034},{"id":"https://openalex.org/keywords/brute-force","display_name":"Brute force","score":0.5308718681335449},{"id":"https://openalex.org/keywords/oligonucleotide","display_name":"Oligonucleotide","score":0.49984240531921387},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4818247854709625},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4132015109062195},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3754785656929016},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17088976502418518},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1603057086467743},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11320966482162476}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8088431358337402},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5857800245285034},{"id":"https://openalex.org/C2986801135","wikidata":"https://www.wikidata.org/wiki/Q1209494","display_name":"Brute force","level":2,"score":0.5308718681335449},{"id":"https://openalex.org/C129312508","wikidata":"https://www.wikidata.org/wiki/Q133686","display_name":"Oligonucleotide","level":3,"score":0.49984240531921387},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4818247854709625},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4132015109062195},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3754785656929016},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17088976502418518},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1603057086467743},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11320966482162476},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1155/2013/793130","is_oa":true,"landing_page_url":"http://doi.org/10.1155/2013/793130","pdf_url":"https://downloads.hindawi.com/archive/2013/793130.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23653640","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23653640","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in bioinformatics","raw_type":null},{"id":"pmh:oai:research.library.mun.ca:1900","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401319","display_name":"Memorial University Research Repository (Memorial University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I130438778","host_organization_name":"Memorial University of Newfoundland","host_organization_lineage":["https://openalex.org/I130438778"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:2645364","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3638690","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:hindawi.com:10.1155/2013/793130","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2013/793130","pdf_url":null,"source":{"id":"https://openalex.org/S4306400340","display_name":"Hindawi Journal of Chemistry (Hindawi)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210126990","host_organization_name":"Hindawi (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210126990"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Research Article"}],"best_oa_location":{"id":"doi:10.1155/2013/793130","is_oa":true,"landing_page_url":"http://doi.org/10.1155/2013/793130","pdf_url":"https://downloads.hindawi.com/archive/2013/793130.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2019165514.pdf","grobid_xml":"https://content.openalex.org/works/W2019165514.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W2094448442","https://openalex.org/W2096990720","https://openalex.org/W2109348952","https://openalex.org/W2112403560","https://openalex.org/W2118782342"],"related_works":["https://openalex.org/W2840367830","https://openalex.org/W2159038264","https://openalex.org/W2027177155","https://openalex.org/W1974344026","https://openalex.org/W2168160406","https://openalex.org/W2050630975","https://openalex.org/W2024398706","https://openalex.org/W1990057240","https://openalex.org/W4317464041","https://openalex.org/W4366997336"],"abstract_inverted_index":{"Obtaining":[0],"unique":[1,36,67,100,120],"oligos":[2,68,101],"from":[3,129],"an":[4],"EST":[5,132],"database":[6],"is":[7],"a":[8,130],"problem":[9,70],"of":[10,19,25,39,65,118],"great":[11],"importance":[12],"in":[13,16,87],"bioinformatics,":[14],"particularly":[15],"the":[17,23,26,47,63,66,116],"discovery":[18],"new":[20,80,95,111],"genes":[21],"and":[22],"mapping":[24],"human":[27],"genome.":[28],"Many":[29],"algorithms":[30,81,112,123],"have":[31],"been":[32],"developed":[33],"to":[34,113],"find":[35],"oligos,":[37],"many":[38],"which":[40,61],"are":[41,124],"much":[42,102],"less":[43],"time":[44,117],"consuming":[45],"than":[46,104],"traditional":[48],"brute":[49],"force":[50],"approach.":[51],"An":[52],"algorithm":[53,75],"was":[54],"presented":[55],"by":[56],"Zheng":[57],"et":[58],"al.":[59],"(2004)":[60],"finds":[62],"solution":[64],"search":[69],"efficiently.":[71],"We":[72,90,108],"implement":[73],"this":[74,88],"as":[76,78],"well":[77],"several":[79],"based":[82],"on":[83,126],"some":[84],"theorems":[85],"included":[86],"paper.":[89],"demonstrate":[91],"how,":[92],"with":[93,105],"these":[94,110],"algorithms,":[96],"we":[97],"can":[98],"obtain":[99],"faster":[103],"previous":[106],"ones.":[107],"parallelize":[109],"further":[114],"improve":[115],"finding":[119],"oligos.":[121],"All":[122],"run":[125],"ESTs":[127],"obtained":[128],"Barley":[131],"database.":[133]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
