{"id":"https://openalex.org/W2158117438","doi":"https://doi.org/10.1155/2012/790482","title":"Modeling Innate Immune Response to Early<i>Mycobacterium</i>Infection","display_name":"Modeling Innate Immune Response to Early<i>Mycobacterium</i>Infection","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2158117438","doi":"https://doi.org/10.1155/2012/790482","mag":"2158117438","pmid":"https://pubmed.ncbi.nlm.nih.gov/23365620"},"language":"en","primary_location":{"id":"doi:10.1155/2012/790482","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2012/790482","pdf_url":"https://downloads.hindawi.com/journals/cmmm/2012/790482.pdf","source":{"id":"https://openalex.org/S36980176","display_name":"Computational and Mathematical Methods in Medicine","issn_l":"1748-670X","issn":["1748-670X","1748-6718"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational and Mathematical Methods in Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://downloads.hindawi.com/journals/cmmm/2012/790482.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045359481","display_name":"Rafael Viana de Carvalho","orcid":"https://orcid.org/0000-0001-8656-5472"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Rafael V. Carvalho","raw_affiliation_strings":["Leiden Institute of Advanced Computer Science, Leiden University, Niels Bohrweg 1, 2333 CA Leiden, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0001-8656-5472","affiliations":[{"raw_affiliation_string":"Leiden Institute of Advanced Computer Science, Leiden University, Niels Bohrweg 1, 2333 CA Leiden, The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014564304","display_name":"Jetty Kleijn","orcid":"https://orcid.org/0000-0001-9506-4071"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Jetty Kleijn","raw_affiliation_strings":["Leiden Institute of Advanced Computer Science, Leiden University, Niels Bohrweg 1, 2333 CA Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden Institute of Advanced Computer Science, Leiden University, Niels Bohrweg 1, 2333 CA Leiden, The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072386803","display_name":"Annemarie H. Meijer","orcid":"https://orcid.org/0000-0002-1325-0725"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Annemarie H. Meijer","raw_affiliation_strings":["Institute of Biology, Leiden University, Einsteinweg 55, 2333 CC Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biology, Leiden University, Einsteinweg 55, 2333 CC Leiden, The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022631255","display_name":"Fons J. Verbeek","orcid":"https://orcid.org/0000-0003-2445-8158"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Fons J. Verbeek","raw_affiliation_strings":["Leiden Institute of Advanced Computer Science, Leiden University, Niels Bohrweg 1, 2333 CA Leiden, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0003-2445-8158","affiliations":[{"raw_affiliation_string":"Leiden Institute of Advanced Computer Science, Leiden University, Niels Bohrweg 1, 2333 CA Leiden, The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5022631255"],"corresponding_institution_ids":["https://openalex.org/I121797337"],"apc_list":{"value":2100,"currency":"USD","value_usd":2100},"apc_paid":{"value":2100,"currency":"USD","value_usd":2100},"fwci":1.2091,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.7861111,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"2012","issue":null,"first_page":"1","last_page":"12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9861000180244446,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9861000180244446,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9613000154495239,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9556999802589417,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/innate-immune-system","display_name":"Innate immune system","score":0.5560038685798645},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5375508666038513},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5168883800506592},{"id":"https://openalex.org/keywords/mycobacterium-tuberculosis","display_name":"Mycobacterium tuberculosis","score":0.49867725372314453},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4986286163330078},{"id":"https://openalex.org/keywords/host\u2013pathogen-interaction","display_name":"Host\u2013pathogen interaction","score":0.4948236346244812},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49130621552467346},{"id":"https://openalex.org/keywords/petri-net","display_name":"Petri net","score":0.48398327827453613},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.4712023437023163},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.46621495485305786},{"id":"https://openalex.org/keywords/abstraction","display_name":"Abstraction","score":0.4131008982658386},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.33437439799308777},{"id":"https://openalex.org/keywords/tuberculosis","display_name":"Tuberculosis","score":0.3312479555606842},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.29429399967193604},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2021784782409668},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15089675784111023},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11144596338272095}],"concepts":[{"id":"https://openalex.org/C136449434","wikidata":"https://www.wikidata.org/wiki/Q428253","display_name":"Innate immune system","level":3,"score":0.5560038685798645},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5375508666038513},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5168883800506592},{"id":"https://openalex.org/C2777975735","wikidata":"https://www.wikidata.org/wiki/Q130971","display_name":"Mycobacterium tuberculosis","level":3,"score":0.49867725372314453},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4986286163330078},{"id":"https://openalex.org/C2778375072","wikidata":"https://www.wikidata.org/wiki/Q5909198","display_name":"Host\u2013pathogen interaction","level":4,"score":0.4948236346244812},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49130621552467346},{"id":"https://openalex.org/C38677869","wikidata":"https://www.wikidata.org/wiki/Q724168","display_name":"Petri net","level":2,"score":0.48398327827453613},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.4712023437023163},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.46621495485305786},{"id":"https://openalex.org/C124304363","wikidata":"https://www.wikidata.org/wiki/Q673661","display_name":"Abstraction","level":2,"score":0.4131008982658386},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.33437439799308777},{"id":"https://openalex.org/C2781069245","wikidata":"https://www.wikidata.org/wiki/Q12204","display_name":"Tuberculosis","level":2,"score":0.3312479555606842},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.29429399967193604},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2021784782409668},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15089675784111023},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11144596338272095},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007113","descriptor_name":"Immunity, Innate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007113","descriptor_name":"Immunity, Innate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007113","descriptor_name":"Immunity, Innate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009164","descriptor_name":"Mycobacterium Infections","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009164","descriptor_name":"Mycobacterium Infections","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009164","descriptor_name":"Mycobacterium Infections","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009164","descriptor_name":"Mycobacterium Infections","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D009164","descriptor_name":"Mycobacterium Infections","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D009164","descriptor_name":"Mycobacterium Infections","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018448","descriptor_name":"Models, Immunological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018448","descriptor_name":"Models, Immunological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018448","descriptor_name":"Models, Immunological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1155/2012/790482","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2012/790482","pdf_url":"https://downloads.hindawi.com/journals/cmmm/2012/790482.pdf","source":{"id":"https://openalex.org/S36980176","display_name":"Computational and Mathematical Methods in Medicine","issn_l":"1748-670X","issn":["1748-670X","1748-6718"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational and Mathematical Methods in Medicine","raw_type":"journal-article"},{"id":"pmid:23365620","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23365620","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational and mathematical methods in medicine","raw_type":null},{"id":"pmh:oai:doaj.org/article:ab36e00393334d21a1991b148ae29454","is_oa":false,"landing_page_url":"https://doaj.org/article/ab36e00393334d21a1991b148ae29454","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computational and Mathematical Methods in Medicine, Vol 2012 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2555729","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3529460","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:scholarlypublications.universiteitleiden.nl:item_2863460","is_oa":false,"landing_page_url":"https://hdl.handle.net/1887/74125","pdf_url":null,"source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computational and Mathematical Methods in Medicine","raw_type":"Article / Letter to editor"},{"id":"pmh:ul:oai:scholarlypublications.universiteitleiden.nl:item_2863460","is_oa":true,"landing_page_url":"http://hdl.handle.net/1887/74125","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computational and Mathematical Methods in Medicine, 2012, 790482","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1155/2012/790482","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2012/790482","pdf_url":"https://downloads.hindawi.com/journals/cmmm/2012/790482.pdf","source":{"id":"https://openalex.org/S36980176","display_name":"Computational and Mathematical Methods in Medicine","issn_l":"1748-670X","issn":["1748-670X","1748-6718"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational and Mathematical Methods in Medicine","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.7599999904632568}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2158117438.pdf","grobid_xml":"https://content.openalex.org/works/W2158117438.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W151588920","https://openalex.org/W791148253","https://openalex.org/W1537555881","https://openalex.org/W1676917713","https://openalex.org/W1800312023","https://openalex.org/W1964083706","https://openalex.org/W1974854923","https://openalex.org/W1975241669","https://openalex.org/W2007006124","https://openalex.org/W2012768596","https://openalex.org/W2014843809","https://openalex.org/W2016111840","https://openalex.org/W2020889689","https://openalex.org/W2043514557","https://openalex.org/W2043544091","https://openalex.org/W2064964564","https://openalex.org/W2079439457","https://openalex.org/W2082054176","https://openalex.org/W2088842371","https://openalex.org/W2092599114","https://openalex.org/W2098057270","https://openalex.org/W2099452097","https://openalex.org/W2102467166","https://openalex.org/W2104941073","https://openalex.org/W2110568039","https://openalex.org/W2112332161","https://openalex.org/W2121449107","https://openalex.org/W2128565444","https://openalex.org/W2128859618","https://openalex.org/W2135899333","https://openalex.org/W2138948319","https://openalex.org/W2139492141","https://openalex.org/W2140834671","https://openalex.org/W2141890333","https://openalex.org/W2148895036","https://openalex.org/W2164474259","https://openalex.org/W2167372128","https://openalex.org/W2169491699","https://openalex.org/W2169804422","https://openalex.org/W2270158947","https://openalex.org/W2404063676"],"related_works":["https://openalex.org/W1551257573","https://openalex.org/W4230983483","https://openalex.org/W2132799268","https://openalex.org/W1980200158","https://openalex.org/W2154794415","https://openalex.org/W791317142","https://openalex.org/W2982241419","https://openalex.org/W2109094990","https://openalex.org/W207829213","https://openalex.org/W4245853730"],"abstract_inverted_index":{"In":[0,17],"the":[1,38,58,61,65,79,85,88,105,145,157,194,197],"study":[2],"of":[3,60,75,109,196,199],"complex":[4],"patterns":[5],"in":[6,52,69,93,112,141],"biology,":[7],"mathematical":[8],"and":[9,44,96,107,129,164,168,178,185],"computational":[10,55],"models":[11],"are":[12,137],"emerging":[13],"as":[14],"important":[15],"tools.":[16],"addition":[18],"to":[19,29,41,83,138,176,181,186],"experimental":[20],"approaches,":[21],"these":[22,136],"modeling":[23,175],"tools":[24],"have":[25],"recently":[26],"been":[27],"applied":[28],"address":[30],"open":[31],"questions":[32],"regarding":[33],"host-pathogen":[34,158],"interaction":[35,59,86,159],"dynamics,":[36],"including":[37],"immune":[39,67],"response":[40],"mycobacterial":[42],"infection":[43,63,97,146],"tuberculous":[45],"granuloma":[46,94],"formation.":[47],"We":[48,77,99],"present":[49],"an":[50],"approach":[51],"which":[53],"a":[54,72,101,151],"model":[56,84,103],"represents":[57],"Mycobacterium":[62],"with":[64],"innate":[66],"system":[68],"zebrafish":[70],"at":[71,126],"high":[73],"level":[74],"abstraction.":[76],"use":[78],"Petri":[80],"Net":[81],"formalism":[82],"between":[87],"key":[89],"host":[90],"elements":[91],"involved":[92],"formation":[95],"dissemination.":[98],"define":[100],"qualitative":[102],"for":[104],"understanding":[106],"description":[108],"causal":[110],"relations":[111],"this":[113,133],"dynamic":[114],"process.":[115],"Complex":[116],"processes":[117,155],"involving":[118],"cell-cell":[119],"or":[120],"cell-bacteria":[121],"communication":[122],"can":[123,160],"be":[124,139,161],"modeled":[125],"smaller":[127],"scales":[128],"incorporated":[130],"hierarchically":[131],"into":[132],"main":[134],"model;":[135],"included":[140],"later":[142],"elaborations.":[143],"With":[144],"mechanism":[147],"being":[148],"defined":[149],"on":[150],"higher":[152],"level,":[153],"lower-level":[154],"influencing":[156],"identified,":[162],"modeled,":[163],"tested":[165],"both":[166],"quantitatively":[167],"qualitatively.":[169],"This":[170],"systems":[171],"biology":[172],"framework":[173],"incorporates":[174],"generate":[177],"test":[179],"hypotheses,":[180],"perform":[182],"virtual":[183],"experiments,":[184],"make":[187],"experimentally":[188],"verifiable":[189],"predictions.":[190],"Thereby":[191],"it":[192],"supports":[193],"unraveling":[195],"mechanisms":[198],"tuberculosis":[200],"infection.":[201]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2016-06-24T00:00:00"}
