{"id":"https://openalex.org/W2083408069","doi":"https://doi.org/10.1155/2012/509126","title":"BioEve Search: A Novel Framework to Facilitate Interactive Literature Search","display_name":"BioEve Search: A Novel Framework to Facilitate Interactive Literature Search","publication_year":2012,"publication_date":"2012-05-28","ids":{"openalex":"https://openalex.org/W2083408069","doi":"https://doi.org/10.1155/2012/509126","mag":"2083408069","pmid":"https://pubmed.ncbi.nlm.nih.gov/22693501"},"language":"en","primary_location":{"id":"doi:10.1155/2012/509126","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2012/509126","pdf_url":"https://downloads.hindawi.com/archive/2012/509126.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://downloads.hindawi.com/archive/2012/509126.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111802636","display_name":"Syed Toufeeq Ahmed","orcid":null},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Syed Toufeeq Ahmed","raw_affiliation_strings":["Department of Biomedical Informatics, Vanderbilt University, Nashville, TN 37232, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Vanderbilt University, Nashville, TN 37232, USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084781695","display_name":"Hasan Davulcu","orcid":"https://orcid.org/0000-0001-5602-8270"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hasan Davulcu","raw_affiliation_strings":["Department of Computer Science and Engineering, Arizona State University, Tempe, AZ 85281, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Arizona State University, Tempe, AZ 85281, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015331552","display_name":"Sukru Tikves","orcid":"https://orcid.org/0000-0002-5830-4010"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sukru Tikves","raw_affiliation_strings":["Department of Computer Science and Engineering, Arizona State University, Tempe, AZ 85281, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Arizona State University, Tempe, AZ 85281, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070109304","display_name":"Radhika Nair","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Radhika Nair","raw_affiliation_strings":["Department of Computer Science and Engineering, Arizona State University, Tempe, AZ 85281, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Arizona State University, Tempe, AZ 85281, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006688612","display_name":"Zhongming Zhao","orcid":"https://orcid.org/0000-0002-3477-0914"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhongming Zhao","raw_affiliation_strings":["Department of Biomedical Informatics, Vanderbilt University, Nashville, TN 37232, USA","Department of Cancer Biology, Vanderbilt University School of Medicine, Nashville, TN 37232, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Vanderbilt University, Nashville, TN 37232, USA","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Department of Cancer Biology, Vanderbilt University School of Medicine, Nashville, TN 37232, USA","institution_ids":["https://openalex.org/I200719446"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5111802636"],"corresponding_institution_ids":["https://openalex.org/I200719446"],"apc_list":null,"apc_paid":null,"fwci":0.1343,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.52988735,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"2012","issue":null,"first_page":"1","last_page":"12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9764000177383423,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9746999740600586,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7350038886070251},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6166053414344788},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.48157715797424316},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.39298614859580994},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32288286089897156}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7350038886070251},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6166053414344788},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.48157715797424316},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.39298614859580994},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32288286089897156}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1155/2012/509126","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2012/509126","pdf_url":"https://downloads.hindawi.com/archive/2012/509126.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22693501","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22693501","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2378514","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3368157","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1155/2012/509126","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2012/509126","pdf_url":"https://downloads.hindawi.com/archive/2012/509126.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2083408069.pdf","grobid_xml":"https://content.openalex.org/works/W2083408069.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W1483193848","https://openalex.org/W1509595041","https://openalex.org/W1553019137","https://openalex.org/W1568339100","https://openalex.org/W1571453868","https://openalex.org/W1603411805","https://openalex.org/W1875753471","https://openalex.org/W1954715867","https://openalex.org/W1999117234","https://openalex.org/W2029594649","https://openalex.org/W2032566933","https://openalex.org/W2049319105","https://openalex.org/W2060565333","https://openalex.org/W2062163602","https://openalex.org/W2064030835","https://openalex.org/W2065807795","https://openalex.org/W2081687495","https://openalex.org/W2094591616","https://openalex.org/W2101265630","https://openalex.org/W2105481243","https://openalex.org/W2107344625","https://openalex.org/W2109070394","https://openalex.org/W2112454182","https://openalex.org/W2120736575","https://openalex.org/W2122904379","https://openalex.org/W2127978399","https://openalex.org/W2129267433","https://openalex.org/W2130947465","https://openalex.org/W2132784310","https://openalex.org/W2132805951","https://openalex.org/W2137881949","https://openalex.org/W2143349571","https://openalex.org/W2147880316","https://openalex.org/W2152698860","https://openalex.org/W2154148563","https://openalex.org/W2154531419","https://openalex.org/W2158505321","https://openalex.org/W2159335058","https://openalex.org/W2166474856","https://openalex.org/W2169918010","https://openalex.org/W2501639669","https://openalex.org/W2614062905","https://openalex.org/W3161377175","https://openalex.org/W4251308671","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"Background.":[0],"Recent":[1],"advances":[2],"in":[3,8,27,76,107,177],"computational":[4],"and":[5,20,34,50,62,120,125,130,134,146,172],"biological":[6],"methods":[7],"last":[9],"two":[10],"decades":[11],"have":[12],"remarkably":[13],"changed":[14],"the":[15,24,29,67,77,105],"scale":[16],"of":[17,31,36,169,179],"biomedical":[18,32,180],"research":[19],"with":[21,46,94,183],"it":[22,159],"began":[23],"unprecedented":[25],"growth":[26],"both":[28],"production":[30],"data":[33],"amount":[35],"published":[37],"literature":[38,181],"discussing":[39],"it.":[40],"An":[41],"automated":[42],"extraction":[43],"system":[44],"coupled":[45],"a":[47,82],"cognitive":[48],"search":[49,102,114,132,149,165],"navigation":[51],"service":[52],"over":[53,166],"these":[54],"document":[55],"collections":[56],"would":[57],"not":[58],"only":[59],"save":[60],"time":[61],"effort,":[63],"but":[64],"also":[65],"pave":[66],"way":[68],"to":[69,98,127,148,161,173],"discover":[70,143,174],"hitherto":[71],"unknown":[72],"information":[73,151],"implicitly":[74],"conveyed":[75],"texts.":[78],"Results.":[79],"We":[80],"developed":[81],"novel":[83],"framework":[84,157],"(named":[85],"\"BioEve\")":[86],"that":[87],"seamlessly":[88],"integrates":[89],"Faceted":[90],"Search":[91,156],"(Information":[92],"Retrieval)":[93],"Information":[95],"Extraction":[96],"module":[97],"provide":[99],"an":[100,137],"interactive":[101,164],"experience":[103],"for":[104],"researchers":[106],"life":[108],"sciences.":[109],"It":[110],"enables":[111],"guided":[112],"step-by-step":[113],"query":[115],"refinement,":[116],"by":[117],"suggesting":[118],"concepts":[119,145],"entities":[121],"(like":[122],"genes,":[123],"drugs,":[124],"diseases)":[126],"quickly":[128],"filter":[129],"modify":[131],"direction,":[133],"thereby":[135],"facilitating":[136],"enriched":[138],"paradigm":[139],"where":[140],"user":[141],"can":[142],"related":[144],"keywords":[147],"while":[150],"seeking.":[152],"Conclusions.":[153],"The":[154],"BioEve":[155],"makes":[158],"easier":[160],"enable":[162],"scalable":[163],"large":[167],"collection":[168],"textual":[170],"articles":[171,182],"knowledge":[175],"hidden":[176],"thousands":[178],"ease.":[184]},"counts_by_year":[{"year":2013,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
