{"id":"https://openalex.org/W2166300721","doi":"https://doi.org/10.1155/2012/346765","title":"On the Meaning of Affinity Limits in B-Cell Epitope Prediction for Antipeptide Antibody-Mediated Immunity","display_name":"On the Meaning of Affinity Limits in B-Cell Epitope Prediction for Antipeptide Antibody-Mediated Immunity","publication_year":2012,"publication_date":"2012-11-14","ids":{"openalex":"https://openalex.org/W2166300721","doi":"https://doi.org/10.1155/2012/346765","mag":"2166300721","pmid":"https://pubmed.ncbi.nlm.nih.gov/23209458"},"language":"en","primary_location":{"id":"doi:10.1155/2012/346765","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2012/346765","pdf_url":"https://downloads.hindawi.com/journals/abi/2012/346765.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://downloads.hindawi.com/journals/abi/2012/346765.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040586900","display_name":"Salvador Eugenio C. Caoili","orcid":"https://orcid.org/0000-0002-3210-3763"},"institutions":[{"id":"https://openalex.org/I5791819","display_name":"University of the Philippines Manila","ror":"https://ror.org/01rrczv41","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934","https://openalex.org/I5791819"]}],"countries":["PH"],"is_corresponding":true,"raw_author_name":"Salvador Eugenio C. Caoili","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, College of Medicine, University of the Philippines Manila, Room 101, Medical Annex Building, 547 Pedro Gil Street, Ermita, Manila 1000, Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, College of Medicine, University of the Philippines Manila, Room 101, Medical Annex Building, 547 Pedro Gil Street, Ermita, Manila 1000, Philippines","institution_ids":["https://openalex.org/I5791819"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5040586900"],"corresponding_institution_ids":["https://openalex.org/I5791819"],"apc_list":null,"apc_paid":null,"fwci":1.4778,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.81912833,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"2012","issue":null,"first_page":"1","last_page":"17"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.924930214881897},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.801827073097229},{"id":"https://openalex.org/keywords/immunization","display_name":"Immunization","score":0.6776223182678223},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.4588298499584198},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45526647567749023},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.44847792387008667},{"id":"https://openalex.org/keywords/b-cell","display_name":"B cell","score":0.4407501518726349},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.4390419125556946},{"id":"https://openalex.org/keywords/in-vivo","display_name":"In vivo","score":0.43836134672164917},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.4117351174354553},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.3599820137023926},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.35235023498535156},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.30730849504470825},{"id":"https://openalex.org/keywords/biotechnology","display_name":"Biotechnology","score":0.11684370040893555}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.924930214881897},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.801827073097229},{"id":"https://openalex.org/C2780801004","wikidata":"https://www.wikidata.org/wiki/Q1415366","display_name":"Immunization","level":3,"score":0.6776223182678223},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.4588298499584198},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45526647567749023},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.44847792387008667},{"id":"https://openalex.org/C2778453870","wikidata":"https://www.wikidata.org/wiki/Q188930","display_name":"B cell","level":3,"score":0.4407501518726349},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.4390419125556946},{"id":"https://openalex.org/C207001950","wikidata":"https://www.wikidata.org/wiki/Q141124","display_name":"In vivo","level":2,"score":0.43836134672164917},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.4117351174354553},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.3599820137023926},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.35235023498535156},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.30730849504470825},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.11684370040893555}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1155/2012/346765","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2012/346765","pdf_url":"https://downloads.hindawi.com/journals/abi/2012/346765.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23209458","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23209458","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2513670","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3505629","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1155/2012/346765","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2012/346765","pdf_url":"https://downloads.hindawi.com/journals/abi/2012/346765.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7200000286102295,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320324072","display_name":"Commission on Higher Education","ror":"https://ror.org/04s346m05"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2166300721.pdf","grobid_xml":"https://content.openalex.org/works/W2166300721.grobid-xml"},"referenced_works_count":96,"referenced_works":["https://openalex.org/W86407692","https://openalex.org/W313456047","https://openalex.org/W317529014","https://openalex.org/W1482375143","https://openalex.org/W1543448539","https://openalex.org/W1547153521","https://openalex.org/W1586022877","https://openalex.org/W1825542178","https://openalex.org/W1921456888","https://openalex.org/W1963587733","https://openalex.org/W1967709584","https://openalex.org/W1968895408","https://openalex.org/W1968923417","https://openalex.org/W1969641407","https://openalex.org/W1983303009","https://openalex.org/W1984029616","https://openalex.org/W1984284309","https://openalex.org/W1986276921","https://openalex.org/W1986929126","https://openalex.org/W1991779626","https://openalex.org/W1992482519","https://openalex.org/W1993066166","https://openalex.org/W1994520236","https://openalex.org/W1996792827","https://openalex.org/W1998915407","https://openalex.org/W1999466811","https://openalex.org/W2001442659","https://openalex.org/W2002050149","https://openalex.org/W2003217932","https://openalex.org/W2004637892","https://openalex.org/W2005123541","https://openalex.org/W2010537388","https://openalex.org/W2011304667","https://openalex.org/W2013757167","https://openalex.org/W2019345759","https://openalex.org/W2020005388","https://openalex.org/W2024817450","https://openalex.org/W2028076620","https://openalex.org/W2028147409","https://openalex.org/W2033420011","https://openalex.org/W2034665579","https://openalex.org/W2037398637","https://openalex.org/W2042636349","https://openalex.org/W2043659553","https://openalex.org/W2043808864","https://openalex.org/W2046501494","https://openalex.org/W2046533524","https://openalex.org/W2054392131","https://openalex.org/W2054529773","https://openalex.org/W2056092494","https://openalex.org/W2057515951","https://openalex.org/W2068074750","https://openalex.org/W2068811714","https://openalex.org/W2068967380","https://openalex.org/W2073035193","https://openalex.org/W2073745520","https://openalex.org/W2074747632","https://openalex.org/W2076903720","https://openalex.org/W2077128866","https://openalex.org/W2081702187","https://openalex.org/W2084534408","https://openalex.org/W2084993024","https://openalex.org/W2085381051","https://openalex.org/W2090241465","https://openalex.org/W2095104107","https://openalex.org/W2099451628","https://openalex.org/W2101594380","https://openalex.org/W2103833666","https://openalex.org/W2112129368","https://openalex.org/W2113173494","https://openalex.org/W2119891507","https://openalex.org/W2120492181","https://openalex.org/W2123184152","https://openalex.org/W2127814614","https://openalex.org/W2128221610","https://openalex.org/W2129812718","https://openalex.org/W2132660391","https://openalex.org/W2134000651","https://openalex.org/W2137995988","https://openalex.org/W2140149982","https://openalex.org/W2141068761","https://openalex.org/W2141407731","https://openalex.org/W2141769722","https://openalex.org/W2145813509","https://openalex.org/W2150537020","https://openalex.org/W2158946016","https://openalex.org/W2159826634","https://openalex.org/W2160358721","https://openalex.org/W2160653307","https://openalex.org/W2168196835","https://openalex.org/W2181664392","https://openalex.org/W2264911780","https://openalex.org/W2403379026","https://openalex.org/W2405018456","https://openalex.org/W4211072570","https://openalex.org/W4211241344"],"related_works":["https://openalex.org/W2021824670","https://openalex.org/W2009867644","https://openalex.org/W2363997565","https://openalex.org/W1981120125","https://openalex.org/W3036615648","https://openalex.org/W2408448169","https://openalex.org/W2182598264","https://openalex.org/W2075879923","https://openalex.org/W1978626146","https://openalex.org/W2060253881"],"abstract_inverted_index":{"B-cell":[0,119,183],"epitope":[1,120,184],"prediction":[2,121],"aims":[3],"to":[4,25,46,73,99,122,138,149],"aid":[5,162],"the":[6,39,63,66,94,105,109,125,147,161],"design":[7],"of":[8,56,65,93,108,140,146,163,168],"peptide-based":[9],"immunogens":[10],"(e.g.,":[11],"vaccines)":[12],"for":[13,68,127,182],"eliciting":[14],"antipeptide":[15,57,198],"antibodies":[16,23,67,95,110,199],"that":[17,62,91],"protect":[18],"against":[19],"disease,":[20],"but":[21],"such":[22,157,187],"fail":[24],"confer":[26],"protection":[27],"and":[28,50,90,130,145,167,200],"even":[29],"promote":[30],"disease":[31],"if":[32],"they":[33],"bind":[34],"with":[35,80,96,101,111,160],"low":[36],"affinity.":[37],"Hence,":[38],"Immune":[40],"Epitope":[41],"Database":[42],"(IEDB)":[43],"was":[44],"searched":[45],"obtain":[47],"published":[48],"thermodynamic":[49],"kinetic":[51,83],"data":[52,60],"on":[53,85],"binding":[54],"interactions":[55],"antibodies.":[58],"The":[59],"suggest":[61],"affinity":[64,86,103,126,141],"their":[69,112],"immunizing":[70,113],"peptides":[71],"appears":[72],"be":[74],"limited":[75],"in":[76,88,143,195],"a":[77,178],"manner":[78],"consistent":[79],"previously":[81],"proposed":[82],"constraints":[84],"maturation":[87,142],"vivo":[89,144],"cross-reaction":[92],"proteins":[97],"tends":[98],"occur":[100],"lower":[102],"than":[104],"corresponding":[106],"reaction":[107],"peptides.":[114],"These":[115],"observations":[116],"better":[117],"inform":[118],"avoid":[123],"overestimating":[124],"both":[128],"active":[129,134],"passive":[131,153],"immunization;":[132],"whereas":[133],"immunization":[135,154],"is":[136],"subject":[137],"limitations":[139],"capacity":[148],"accumulate":[150],"endogenous":[151],"antibodies,":[152],"may":[155],"transcend":[156],"limitations,":[158],"possibly":[159],"artificial":[164],"affinity-selection":[165],"processes":[166],"protein":[169,172,192],"engineering.":[170],"Additionally,":[171],"disorder":[173,188],"warrants":[174],"further":[175],"investigation":[176],"as":[177],"possible":[179],"supplementary":[180],"criterion":[181],"prediction,":[185],"where":[186],"obviates":[189],"thermodynamically":[190],"unfavorable":[191],"structural":[193],"adjustments":[194],"cross-reactions":[196],"between":[197],"proteins.":[201]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
