{"id":"https://openalex.org/W1976668650","doi":"https://doi.org/10.1155/2010/923780","title":"Molecular Surface Mesh Generation by Filtering Electron Density Map","display_name":"Molecular Surface Mesh Generation by Filtering Electron Density Map","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W1976668650","doi":"https://doi.org/10.1155/2010/923780","mag":"1976668650","pmid":"https://pubmed.ncbi.nlm.nih.gov/20414352"},"language":"en","primary_location":{"id":"doi:10.1155/2010/923780","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2010/923780","pdf_url":"https://downloads.hindawi.com/journals/ijbi/2010/923780.pdf","source":{"id":"https://openalex.org/S108408918","display_name":"International Journal of Biomedical Imaging","issn_l":"1687-4188","issn":["1687-4188","1687-4196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Biomedical Imaging","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://downloads.hindawi.com/journals/ijbi/2010/923780.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051038673","display_name":"Joachim Giard","orcid":null},"institutions":[{"id":"https://openalex.org/I95674353","display_name":"UCLouvain","ror":"https://ror.org/02495e989","country_code":"BE","type":"education","lineage":["https://openalex.org/I95674353"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Joachim Giard","raw_affiliation_strings":["Communications and Remote Sensing Laboratory, Catholic University of Louvain, B-1348 Louvain-la-Neuve, Belgium. joachim.giard@uclouvain.be","Communications and Remote Sensing Laboratory, Catholic University of Louvain, Louvain-la-Neuve, Belgium#TAB#"],"affiliations":[{"raw_affiliation_string":"Communications and Remote Sensing Laboratory, Catholic University of Louvain, B-1348 Louvain-la-Neuve, Belgium. joachim.giard@uclouvain.be","institution_ids":["https://openalex.org/I95674353"]},{"raw_affiliation_string":"Communications and Remote Sensing Laboratory, Catholic University of Louvain, Louvain-la-Neuve, Belgium#TAB#","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112876298","display_name":"Beno\u00eet Macq","orcid":null},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]},{"id":"https://openalex.org/I95674353","display_name":"UCLouvain","ror":"https://ror.org/02495e989","country_code":"BE","type":"education","lineage":["https://openalex.org/I95674353"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Beno\u00eet Macq","raw_affiliation_strings":["Communications and Remote Sensing Laboratory, Catholic University of Louvain, B-1348 Louvain-la-Neuve, Belgium","Communications and Remote Sensing Laboratory, Catholic University of Louvain, Louvain-la-Neuve, Belgium#TAB#"],"affiliations":[{"raw_affiliation_string":"Communications and Remote Sensing Laboratory, Catholic University of Louvain, B-1348 Louvain-la-Neuve, Belgium","institution_ids":["https://openalex.org/I95674353"]},{"raw_affiliation_string":"Communications and Remote Sensing Laboratory, Catholic University of Louvain, Louvain-la-Neuve, Belgium#TAB#","institution_ids":["https://openalex.org/I99464096"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5051038673"],"corresponding_institution_ids":["https://openalex.org/I95674353","https://openalex.org/I99464096"],"apc_list":{"value":900,"currency":"USD","value_usd":900},"apc_paid":{"value":900,"currency":"USD","value_usd":900},"fwci":3.0716,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.90734908,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2010","issue":"1","first_page":"923780","last_page":"923780"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/marching-cubes","display_name":"Marching cubes","score":0.6392862200737},{"id":"https://openalex.org/keywords/surface","display_name":"Surface (topology)","score":0.593201756477356},{"id":"https://openalex.org/keywords/polygon-mesh","display_name":"Polygon mesh","score":0.5581853985786438},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5564619302749634},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5535470247268677},{"id":"https://openalex.org/keywords/fourier-transform","display_name":"Fourier transform","score":0.48236316442489624},{"id":"https://openalex.org/keywords/electron-density","display_name":"Electron density","score":0.47377490997314453},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4621603488922119},{"id":"https://openalex.org/keywords/ideal","display_name":"Ideal (ethics)","score":0.4334900379180908},{"id":"https://openalex.org/keywords/gaussian","display_name":"Gaussian","score":0.4319485127925873},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.40777021646499634},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.32809537649154663},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.3000238835811615},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.226511150598526},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22190263867378235},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.21959596872329712},{"id":"https://openalex.org/keywords/electron","display_name":"Electron","score":0.19869795441627502},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.17975300550460815},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.17672768235206604},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.16698411107063293},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.1421482264995575},{"id":"https://openalex.org/keywords/mathematical-analysis","display_name":"Mathematical analysis","score":0.11672770977020264}],"concepts":[{"id":"https://openalex.org/C42087268","wikidata":"https://www.wikidata.org/wiki/Q1886184","display_name":"Marching cubes","level":3,"score":0.6392862200737},{"id":"https://openalex.org/C2776799497","wikidata":"https://www.wikidata.org/wiki/Q484298","display_name":"Surface (topology)","level":2,"score":0.593201756477356},{"id":"https://openalex.org/C31487907","wikidata":"https://www.wikidata.org/wiki/Q1154597","display_name":"Polygon mesh","level":2,"score":0.5581853985786438},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5564619302749634},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5535470247268677},{"id":"https://openalex.org/C102519508","wikidata":"https://www.wikidata.org/wiki/Q6520159","display_name":"Fourier transform","level":2,"score":0.48236316442489624},{"id":"https://openalex.org/C125485243","wikidata":"https://www.wikidata.org/wiki/Q905186","display_name":"Electron density","level":3,"score":0.47377490997314453},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4621603488922119},{"id":"https://openalex.org/C2776639384","wikidata":"https://www.wikidata.org/wiki/Q840396","display_name":"Ideal (ethics)","level":2,"score":0.4334900379180908},{"id":"https://openalex.org/C163716315","wikidata":"https://www.wikidata.org/wiki/Q901177","display_name":"Gaussian","level":2,"score":0.4319485127925873},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.40777021646499634},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.32809537649154663},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.3000238835811615},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.226511150598526},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22190263867378235},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.21959596872329712},{"id":"https://openalex.org/C147120987","wikidata":"https://www.wikidata.org/wiki/Q2225","display_name":"Electron","level":2,"score":0.19869795441627502},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.17975300550460815},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.17672768235206604},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.16698411107063293},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.1421482264995575},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.11672770977020264},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1155/2010/923780","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2010/923780","pdf_url":"https://downloads.hindawi.com/journals/ijbi/2010/923780.pdf","source":{"id":"https://openalex.org/S108408918","display_name":"International Journal of Biomedical Imaging","issn_l":"1687-4188","issn":["1687-4188","1687-4196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Biomedical Imaging","raw_type":"journal-article"},{"id":"pmid:20414352","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20414352","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International journal of biomedical imaging","raw_type":null},{"id":"pmh:oai:dial.uclouvain.be:boreal:88491","is_oa":false,"landing_page_url":"http://hdl.handle.net/2078/88491","pdf_url":null,"source":{"id":"https://openalex.org/S4306401974","display_name":"DIAL (Catholic University of Leuven)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I99464096","host_organization_name":"KU Leuven","host_organization_lineage":["https://openalex.org/I99464096"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"International Journal of Biomedical Imaging, Vol. 2010, p. 923780 (2010)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:864c8a52e4a9425087421f945f90c336","is_oa":true,"landing_page_url":"https://doaj.org/article/864c8a52e4a9425087421f945f90c336","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"International Journal of Biomedical Imaging, Vol 2010 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2856016","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2856016","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Int J Biomed Imaging","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1155/2010/923780","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2010/923780","pdf_url":"https://downloads.hindawi.com/journals/ijbi/2010/923780.pdf","source":{"id":"https://openalex.org/S108408918","display_name":"International Journal of Biomedical Imaging","issn_l":"1687-4188","issn":["1687-4188","1687-4196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Biomedical Imaging","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1976668650.pdf","grobid_xml":"https://content.openalex.org/works/W1976668650.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W255996521","https://openalex.org/W1976586954","https://openalex.org/W1981076832","https://openalex.org/W1985953075","https://openalex.org/W1989072478","https://openalex.org/W1990323259","https://openalex.org/W1991300609","https://openalex.org/W2015642465","https://openalex.org/W2028576613","https://openalex.org/W2036309107","https://openalex.org/W2043199972","https://openalex.org/W2043886357","https://openalex.org/W2045065894","https://openalex.org/W2045550557","https://openalex.org/W2053448121","https://openalex.org/W2057849368","https://openalex.org/W2063831812","https://openalex.org/W2065569256","https://openalex.org/W2075481658","https://openalex.org/W2077082416","https://openalex.org/W2078022354","https://openalex.org/W2078290150","https://openalex.org/W2080538147","https://openalex.org/W2081349095","https://openalex.org/W2083339788","https://openalex.org/W2090807899","https://openalex.org/W2095822427","https://openalex.org/W2126615630","https://openalex.org/W2132629607","https://openalex.org/W2145682943","https://openalex.org/W2151047202","https://openalex.org/W2153731681","https://openalex.org/W2155367844","https://openalex.org/W2156260957","https://openalex.org/W2159283556","https://openalex.org/W2162335096","https://openalex.org/W2229412420","https://openalex.org/W2394872204","https://openalex.org/W4246045514","https://openalex.org/W4293003482"],"related_works":["https://openalex.org/W2103453704","https://openalex.org/W2086518481","https://openalex.org/W2009636610","https://openalex.org/W2362049927","https://openalex.org/W1999110816","https://openalex.org/W2539584049","https://openalex.org/W2779816701","https://openalex.org/W2318045947","https://openalex.org/W3144688314","https://openalex.org/W4231929753"],"abstract_inverted_index":{"Bioinformatics":[0],"applied":[1,87],"to":[2],"macromolecules":[3],"are":[4],"now":[5],"widely":[6],"spread":[7],"and":[8,41],"in":[9],"continuous":[10],"expansion.":[11],"In":[12],"this":[13],"context,":[14],"representing":[15,49],"external":[16],"molecular":[17,50,111],"surface":[18],"such":[19],"as":[20],"the":[21,27,66,69,89,93,97,102,110],"Van":[22],"der":[23],"Waals":[24],"Surface":[25,30],"or":[26],"Solvent":[28],"Excluded":[29],"can":[31],"be":[32],"useful":[33],"for":[34],"several":[35],"applications.":[36],"We":[37],"propose":[38],"a":[39,57,106],"fast":[40],"parameterizable":[42],"algorithm":[43,100],"giving":[44],"good":[45],"visual":[46],"quality":[47],"meshes":[48],"surfaces.":[51],"It":[52],"is":[53,65,80],"obtained":[54],"by":[55,82],"isosurfacing":[56],"filtered":[58,81],"electron":[59],"density":[60,63,94],"map.":[61,95],"The":[62],"map":[64,79],"result":[67],"of":[68,71,92,109],"maximum":[70],"Gaussian":[72],"functions":[73],"placed":[74],"around":[75],"atom":[76],"centers.":[77],"This":[78],"an":[83],"ideal":[84],"low-pass":[85],"filter":[86],"on":[88,101],"Fourier":[90],"Transform":[91],"Applying":[96],"marching":[98],"cubes":[99],"inverse":[103],"transform":[104],"provides":[105],"mesh":[107],"representation":[108],"surface.":[112]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}